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Molecularly Imprinted Polymer Embedded BODIPY Probes for the Fluorescence Detection of Antibiotics
(2021)
Antibiotics are widely used to combat bacterial infections in humans and animals and their use has greatly improved modern healthcare. However, frequent and reckless use of antibiotics can cause antibiotic resistance in bacteria and pollute ecosystems. Therefore, the rapid and reliable detection of antibiotics is crucial. Fluorescence sensing is particularly attractive because of its high sensitivity and low limits of detection. Fluorescence assays can be carried out in a variety of platforms such as strips and particles among others. Recently, core-shell molecularly imprinted polymers (MIPs) have emerged as a promising sensor platform for (bio)chemical detection due to their low-cost, high stability, reusability, high affinity and selectivity.MIPs in combination with fluorescent molecular probes are gorgeous, since the covalently embedded probe allows for direct indication of a rebound template and provides a wealth of information about the binding state of a MIP through the multitude of fluorescence parameters accessible, facilitating MIP optimization.
In the present work, we have developed a novel series of fluorescent functional monomers, which consist of a fluorophore with a π-conjugated urea recognition site and one or two polymerizable units. The fluorescent monomers are covalently embedded into the MIP matrix to generate fluorescence changes upon template binding (Figure 1). Preliminary titrations of the dye monomer with the analytes show a blue shift of the absorption spectrum and a decrease in the fluorescence intensity which confirms the formation of hydrogen bonds between the urea and the carboxylate group of the antibiotic. Compared with the non-imprinted polymers, the MIP shells on core carrier particles have demonstrated an effective imprinting by showing a higher fluorescence response upon analyte binding.
Efficient signal generation in DNA-based assays requires understanding of the influence of fluorophores interactions on the spectroscopic properties. The resulting changes in fluorescence intensity, quantum yield, emission anisotropy, and fluorescence lifetime provide straightforward tools for the study of molecular dynamics and interaction between labels and nucleic acids. Searching for bright fluorescent reporters for rolling circle amplification (RCA) as efficient signal enhancement strategy for biological formats, we investigated the spectroscopic properties of seven dyes: cyanines, rhodamines, and BODIPYs. They spectrally resemble Cy3, the most frequently used fluorophore in biodetection formats, and are measured in six samples (free dye, dye-dUTP, internally labeled ssDNA and dsDNA—single- and triple-labeled) using steady-state and time-resolved fluorometry. Special emphasis was dedicated to characterizing the nature of the interaction of these fluorophores differing in dye class, charge, and rigidity. Our results suggest dye charge and structure as main factors governing the dyes interactions, with DY-555 and Cy3B presenting the best candidates for our envisaged signal amplification strategy. This label comparison underlines the importance of a proper understanding of structure-property relations and dyebiomolecule interactions for reporter choice and presents a road map towards the design and interpretation of experiments using these labels on DNA of known sequence.
Organic fluorescent dyes are a fundamental component in biomedical research and diagnostic imaging. The major classes encompass polymethine dyes, xanthene dyes, 4,4'-difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY) dyes, phenoxazines, and rare earth metal complexes. These compounds have been synthesized in manifold variations to optimize their photophysical properties and physicochemical behavior in physiological media and to enable conjugation to targeting molecules and nanocarriers. Furthermore, stimuli-responsive structural motifs were designed to apply these fluorophores as sensors for disease-related physiological and molecular conditions. This chapter is devoted to the chemical base of optical imaging agents, covering the relevant properties of fluorophores and the synthetic concepts toward intelligent optical imaging probes.
Dye–biomolecule conjugation is frequently accompanied by considerable spectral changes of the dyes absorption spectrum that limit the use of the common photometrical method for the determination of labeling densities. Here, we describe an improvement of this method using the integral absorbance of the dye instead of its absorbance at the long wavelength maximum to determine the concentration of the biomolecule-coupled dye. This approach is illustrated for three different cyanine dyes conjugated to the antibody IgG.
Using fluorescence-guided surgery (FGS) to cytoreductive surgery helps achieving complete resection of microscopic ovarian tumors. The use of visible and NIR-I fluorophores has led to beneficial results in clinical trials; however, involving NIR-II dyes seems to outperform those benefits due to the deeper tissue imaging and higher signal/noise ratio attained within the NIR-II optical window. In this context, we developed NIR-II emitting dyes targeting human epidermal growth factor receptor 2 (HER2)-positive ovarian tumors by coupling water-soluble NIR-II aza-BODIPY dyes to the FDA-approved anti-HER2 antibody, namely, trastuzumab. These bioconjugated NIR-II-emitting dyes displayed a prolonged stability in serum and a maintained affinity toward HER2 in vitro. We obtained selective targeting of HER2 positive tumors (SKOV-3) in vivo, with a favorable tumor accumulation. We demonstrated the fluorescence properties and the specific HER2 binding of the bioconjugated dyes in vivo and thus their potential for NIR-II FGS in the cancer setting.