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RNA detection by FRET systems based on peptide nucleic acid-QD conjugates

  • Today, 40 % of the world’s population live in areas with a significant risk of dengue infection. Early and reliable diagnosis of dengue virus (DENV) is essential to provide the patients with the required medical care and prevent spreading of the disease. Conventional methods for DENV diagnosis like PCR and virus isolation can be used in laboratory settings, yet are difficult to implement in point-of-care diagnostics, requiring simple, selective, fast, and sensitive detection schemes. We present here a novel approach for the detection of DENV, via its RNA, with optical read-out that relies on RNA-catalyzed fluorophore transfer onto a semiconductor quantum dot (QD) and Förster resonance energy transfer (FRET). For this RNA assay, peptide nucleic acid (PNA) oligomers were used as highly specific capture and reporter probes. PNA exhibits remarkable affinity towards RNA as well as extremely high chemical and enzymatic stability. The capture probe, which is immobilized on a QD acting asToday, 40 % of the world’s population live in areas with a significant risk of dengue infection. Early and reliable diagnosis of dengue virus (DENV) is essential to provide the patients with the required medical care and prevent spreading of the disease. Conventional methods for DENV diagnosis like PCR and virus isolation can be used in laboratory settings, yet are difficult to implement in point-of-care diagnostics, requiring simple, selective, fast, and sensitive detection schemes. We present here a novel approach for the detection of DENV, via its RNA, with optical read-out that relies on RNA-catalyzed fluorophore transfer onto a semiconductor quantum dot (QD) and Förster resonance energy transfer (FRET). For this RNA assay, peptide nucleic acid (PNA) oligomers were used as highly specific capture and reporter probes. PNA exhibits remarkable affinity towards RNA as well as extremely high chemical and enzymatic stability. The capture probe, which is immobilized on a QD acting as FRET donor, bears a nucleophile at the N-terminus and the reporter probe is modified with an organic dye acting as FRET acceptor. The presence of DENV genomic RNA in the sample triggers a transfer of the dye onto the QD, signaled by FRET between the QD and the dye. A unique advantage of this system is the ability of one RNA molecule to trigger multiple transfer reactions, thereby amplifying the fluorescence signal. This assay together with the exceptional brightness of QDs and outstanding hybridization properties of PNA allows for highly specific and sensitive detection of DENV RNA in the sub-nM range.zeige mehrzeige weniger

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  • OZ poster MAF 2017_09_04.pdf
    eng

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Metadaten
Autor*innen:Oleksandr Zavoiura
Koautor*innen:Ute Resch-Genger, O. Seitz
Dokumenttyp:Posterpräsentation
Veröffentlichungsform:Präsentation
Sprache:Englisch
Jahr der Erstveröffentlichung:2017
DDC-Klassifikation:Naturwissenschaften und Mathematik / Chemie / Analytische Chemie
Freie Schlagwörter:Click chemistry; PNA; QD; RNA detection
Veranstaltung:MAF 2017
Veranstaltungsort:Brügge, Belgium
Beginndatum der Veranstaltung:10.09.2017
Enddatum der Veranstaltung:13.09.2017
Verfügbarkeit des Dokuments:Datei im Netzwerk der BAM verfügbar ("Closed Access")
Datum der Freischaltung:01.12.2017
Referierte Publikation:Nein
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