TY - GEN A1 - Janssen, Jan A1 - George, Janine A1 - Geiger, Julian A1 - Bercx, Marnik A1 - Wang, Xing A1 - Ertural, Christina A1 - Schaarschmidt, Joerg A1 - Ganose, Alex M. A1 - Pizzi, Giovanni A1 - Hickel, Tilmann A1 - Neugebauer, Joerg T1 - A Python workflow definition for computational materials design N2 - Numerous Workflow Management Systems (WfMS) have been developed in the field of computational materials science with different workflow formats, hindering interoperability and reproducibility of workflows in the field. To address this challenge, we introduce here the Python Workflow Definition (PWD) as a workflow exchange format to share workflows between Python-based WfMS, currently AiiDA, jobflow, and pyiron. This development is motivated by the similarity of these three Python-based WfMS, that represent the different workflow steps and data transferred between them as nodes and edges in a graph. With the PWD, we aim at fostering the interoperability and reproducibility between the different WfMS in the context of Findable, Accessible, Interoperable, Reusable (FAIR) workflows. To separate the scientific from the technical complexity, the PWD consists of three components: (1) a conda environment that specifies the software dependencies, (2) a Python module that contains the Python functions represented as nodes in the workflow graph, and (3) a workflow graph stored in the JavaScript Object Notation (JSON). The first version of the PWD supports directed acyclic graph (DAG)-based workflows. Thus, any DAG-based workflow defined in one of the three WfMS can be exported to the PWD and afterwards imported from the PWD to one of the other WfMS. After the import, the input parameters of the workflow can be adjusted and computing resources can be assigned to the workflow, before it is executed with the selected WfMS. This import from and export to the PWD is enabled by the PWD Python library that implements the PWD in AiiDA, jobflow, and pyiron. KW - Automation KW - Workflows KW - Materials Design KW - Multi-scale simulation KW - Digitalization PY - 2025 DO - https://doi.org/10.5281/zenodo.15516179 PB - Zenodo CY - Geneva AN - OPUS4-63233 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - GEN A1 - Breitenbach, Romy A1 - Gerrits, Ruben A1 - Dementyeva, Polina A1 - Knabe, Nicole A1 - Schumacher, Julia A1 - Feldmann, Ines A1 - Radnik, Jörg A1 - Ryo, M. A1 - Gorbushina, Anna T1 - Data for "The role of extracellular polymeric substances of fungal biofilms in mineral attachment and weathering" N2 - Data for the publication "The role of extracellular polymeric substances of fungal biofilms in mineral attachment and weathering" (https://doi.org/10.1038/s41529-022-00253-1). It includes: - The Summary of the EPS concentration, EPS sugar components and EPS linkages. - The Summary of the XPS analysis of freeze-dried biofilm samples of all strains. - The Summary of the pH, Mg, SI and Fe concentration, biomass and olivine dissolution rate for each time point of all dissolution experiments. KW - Biofilms PY - 2022 DO - https://doi.org/10.26272/opus4-54901 PB - Bundesanstalt für Materialforschung und -prüfung (BAM) CY - Berlin AN - OPUS4-54901 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - GEN A1 - Hahn, Marc Benjamin T1 - Temperature effects in the Object Oriented Micromagnetic Framework (OOMMF) - OOMMF input parameter files for Tc determination N2 - To simulate the movement of the macroscopic magnetic moment in ferromagnetic systems under the influence of elevated temperatures, the stochastic version of the Landau-Lifshitz (LL) or the Landau-Lifshitz-Gilbert equation with a spin density of one per unit cell has to be used. To apply the stochastic LL to micromagnetic simulations, where the spin density per unit cell is generally higher, a conversion has to be performed. OOMMF sample files MIF) are provided which can be used to determine the Curie temperature for the classical bulk magnets, iron, nickel and cobalt. KW - OOMMF KW - Temperature KW - Micromagnetism KW - Thetaevolve KW - Ferromagnetism KW - Exchange interaction KW - LLG KW - Landau Lifshitz equation KW - Magnetic moment KW - Magnetic nanoparticles KW - Object oriented micromagnetic framework KW - Stochastic Landau Lifshitz Gilbert equation KW - Temperature scaling PY - 2020 DO - https://doi.org/10.26272/opus4-51169 PB - Bundesanstalt für Materialforschung und -prüfung (BAM) CY - Berlin AN - OPUS4-51169 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - GEN A1 - Hahn, Marc Benjamin T1 - TOPAS cell model with nanoparticles N2 - These files contain cell models for TOPAS/Geant4 and the inclusion of nano particles in particle scattering simulations. A simple spherical cell with nanoparticles can be generated in a fast manner. The user has the option to include the following organelles: nucleus, mitochondria, cell membrane. Additionally nanoparticles can be included in the cytosol and at the surface of the nucleus and/or the mitochondria. The C++ classes in this repository extend the functionality of the TOPAS (http://www.topasmc.org/) Monte-Carlo program, which is itself a wrapper of the Geant4 MCS Toolkit (http://geant4.org). The sourcecode together with examples and scorers are provided. "If you use this extension please cite the following literature: Hahn, M.B., Zutta Villate, J.M. "Combined cell and nanoparticle models for TOPAS to study radiation dose enhancement in cell organelles." Sci Rep 11, 6721 (2021). https://doi.org/10.1038/s41598-021-85964-2 " KW - Monte-Carlo simulation KW - MCS KW - Geant4 KW - TOPAS KW - TOPAS-nBio KW - Dosimetry KW - Nanoparticles KW - Nanoparticle KW - AuNP KW - Gold KW - Microdosimetry KW - Targeted nanoparticle KW - Simulation KW - Particle scattering KW - Cell KW - Nucleus KW - Mitochondria KW - Cancer therapy KW - Radiation therapy PY - 2020 UR - https://github.com/BAMresearch/TOPAS-CellModels UR - https://github.com/MarcBHahn/TOPAS-CellModels DO - https://doi.org/10.26272/opus4-51150 PB - Bundesanstalt für Materialforschung und -prüfung (BAM) CY - Berlin AN - OPUS4-51150 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - GEN A1 - Völker, Christoph T1 - WEBSLAMD N2 - The objective of SLAMD is to accelerate materials research in the wet lab through AI. Currently, the focus is on sustainable concrete and binder formulations, but it can be extended to other material classes in the future. 1. Summary Leverage the Digital Lab and AI optimization to discover exciting new materials Represent resources and processes and their socio-economic impact. Calculate complex compositions and enrich them with detailed material knowledge. Integrate laboratory data and apply it to novel formulations. Tailor materials to the purpose to achieve the best solution. Workflow Digital Lab Specify resources: From base materials to manufacturing processes – "Base" enables a detailed and consistent description of existing resources Combine resources: The combination of base materials and processes offers an almost infinite optimization potential. "Blend" makes it easier to design complex configurations. Digital Formulations: With "Formulations" you can effortlessly convert your resources into the entire spectrum of possible concrete formulations. This automatically generates a detailed set of data for AI optimization. AI-Optimization Materials Discovery: Integrate data from the "Digital Lab" or upload your own material data. Enrich the data with lab results and adopt the knowledge to new recipes via artificial intelligence. Leverage socio-economic metrics to identify recipes tailored to your requirements. KW - Materials informatics KW - Scientific software KW - Sequential learning PY - 2022 UR - https://github.com/BAMresearch/WEBSLAMD DO - https://doi.org/10.26272/opus4-56640 PB - GitHub CY - San Francisco, CA, USA AN - OPUS4-56640 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - GEN A1 - Hahn, Marc Benjamin T1 - BioSAXS models for TOPAS/Geant4 N2 - Models for TOPAS/Geant4 to estimate the microscopic dose received by biomolecules during bioSAXS experiments. The C++ classes in this repository extend the functionality of the TOPAS (http://www.topasmc.org/) Monte-Carlo program, which is itself a wrapper of the Geant4 MCS Toolkit (http://geant4.org). KW - TOPAS KW - TOPAS-nBio KW - Geant4 KW - Geant4-DNA KW - MCS KW - Microdosimetry KW - Protein KW - Proteins KW - Particle scattering KW - G5P KW - GV5 KW - SAXS KW - Monte-Carlo simulation KW - Dosimetry KW - Micorscopic dose-damage relation PY - 2022 UR - https://github.com/MarcBHahn/TOPAS-bioSAXS-dosimetry DO - https://doi.org/10.26272/opus4-55751 PB - Bundesanstalt für Materialforschung und -prüfung (BAM) CY - Berlin AN - OPUS4-55751 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - GEN A1 - Ávila Calderón, Luis A1 - Schriever, Sina T1 - BAM Reference Data: Creep of Single-Crystal Ni-Based Superalloy CMSX-6 N2 - This publication provides comprehensive metadata and test results of constant force creep tests according to DIN EN ISO 204:2019-4 on the single crystal Ni-based superalloy CMSX-6 at T = 980 °C and initial stresses between 140 MPa and 230 MPa. The tests were carried out in an accredited test laboratory using calibrated measuring equipment. The data were audited and are BAM reference data. KW - NFDI-MatWerk KW - Digitalisierung KW - CMSX-6 KW - Creep KW - Reference Data KW - Referenzdaten KW - Ni-Based Superalloy PY - 2024 DO - https://doi.org/10.5281/zenodo.13937986 PB - Zenodo CY - Geneva AN - OPUS4-61649 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - GEN A1 - Suárez Ocano, Patricia A1 - Agudo Jácome, Leonardo A1 - Lopez-Galilea, I. A1 - Darvishi Kamachali, Reza A1 - Fries, S. G. T1 - Data regarding the experimental findings compared with CALPHAD calculations of the AlMo0.5NbTa0.5TiZr refractory high entropy superalloy N2 - This contribution contains the raw data used to compare experimental results with thermodynamic calculations using the CALPHAD method, which is related to the research article “The AlMo0.5NbTa0.5TiZr refractory high entropy superalloy: experimental findings and comparison with calculations using the CALPHAD method” [1] , and therefore this article can be used as a basis for interpreting the data contained therein. The AlMo0.5NbTa0.5TiZr refractory superalloy was characterized in the cast and annealed condition (1400 °C for 24 h) in order to measure grain size and to identify and measure the size and area fraction of the phases present. The raw data of this article include X-ray diffraction (XRD) measurements, microstructural characterization by scanning and transmission electron microscopy (SEM and TEM), and elemental analysis by energy dispersive X-ray spectroscopy (EDX). XRD includes the determination of phases and the lattice parameters (A2, B2, and hexagonal structure). Microstructural analysis by scanning and transmission electron microscopy includes (1) identification of composition, size, and volume fraction of the present phases and (2) determination of grain size. Based on these experimental data, it is possible to identify similarities and discrepancies with the data calculated using the CALPHAD method for the alloy under study in Ref. [1] , which provides the basis for better and more efficient development of reliable databases. KW - Microstructural characterization KW - Refractory high entropy alloys KW - Scanning electron microscopy KW - Transmission electron microscopy PY - 2023 DO - https://doi.org/10.17632/d742ccty5f.4 PB - Mendeley Data CY - Oxford, UK AN - OPUS4-56861 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - GEN A1 - Fritzsche, Sven A1 - Weimann, Christiane A1 - Pauw, Brian Richard A1 - Sturm, Heinz T1 - 2PP-TestArtifact N2 - This repository contains a test artifact (TA), also called test structure, designed for two-photon polymerization (also known as Direct Laser Writing (DLW) or Two/Multi-photon lithography (2PA/MPA)). Test artifacts can be used to compare structures, to check options used by the slicer, check the state of the 2PP machine itself or to get a construction guidelines for a certain combination of power, velocity and settings. The associated paper can be found here: https://dx.doi.org/10.1088/1361-6501/acc47a General ideas behind the test artifact: 1. optimized for 2PP-DLW 2. should be fast and easy to analyse with optical microscopy or 3. scanning electron microscopy without tilt. 3. short time to fabricate 4. include a reasonable amount of different features 5. bulk and small structures on the substrate KW - Reference structure KW - Calibration structure KW - Test structure KW - Laser writing KW - Two-photon polymerization KW - 3D printing KW - Additive manufacturing KW - Microprinting KW - Multi-photon light structuring PY - 2023 DO - https://doi.org/10.6084/m9.figshare.22285204.v2 PB - Digital Science CY - Cambridge, MA, USA AN - OPUS4-57165 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - GEN A1 - Robens-Radermacher, Annika T1 - Dataset for publication: Characterization of temperature influence on the structural built-up of 3D concrete N2 - Implementation, data, and results for the generation of the study "Characterization of temperature influence on the structural built-up of 3D concrete". In this study, the influence of temperature on structural build-up is investigated. A significant temperature influence is demonstrated for three experimental setups (small amplitude oscillatory shear, constant shear rate, and small amplitude oscillatory extensional tests) using different materials. A common modeling framework capturing the time- and temperature evolution is derived based on the maturity approach. Two alternative formulations for the time evolution were proposed. Both models were calibrated using a probabilistic approach, allowing for uncertainty quantification. The calibrated models successfully predict the structural build-up under different ambient temperature conditions. KW - Structural build-up KW - 3D concrete printing KW - Modeling KW - Parameter identification KW - Temperature influence PY - 2025 DO - https://doi.org/10.5281/zenodo.15845818 PB - Zenodo CY - Geneva AN - OPUS4-64982 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - GEN A1 - Riechers, Birte A1 - Maaß, Robert T1 - nanoindentation data associated with the publication "On the elastic microstructure of bulk metallic glasses" in Materials&Design 2023 N2 - This dataset consists of indentation data measured with a conospherical tip in a Hysitron-Bruker TI980 Nanoindenter on the surface of a <100> Silicon wafer and a polished cross-sectional cut of a Zr65Cu25Al10 bulk metallic glass. It is associated with the following publication: Birte Riechers, Catherine Ott, Saurabh Mohan Das, Christian H. Liebscher, Konrad Samwer, Peter M. Derlet and Robert Maass "On the elastic microstructure of bulk metallic glasses" Materials and Design xxx, (2023) 111929. https://doi.org/10.1016/j.matdes.2023.111929 All experimental information can be found in this paper and in the accompanying supplementary information. This electronic version of the data was published on the "Zenodo Data repository" found at http://zenodo.org/deposit in the community "Bundesanstalt fuer Materialforschung und -pruefung (BAM)". The authors have copyright to these data. You are welcome to use the data for further analysis, but are requested to cite the original publication whenever use is made of the data in publications, presentations, etc. Any questions regarding the data can be addressed to birte.riechers@bam.de who would also appreciate a note if you find the data useful. KW - Metallic glasses KW - Nanoindentation KW - Elastic microstructure PY - 2023 DO - https://doi.org/10.5281/zenodo.7818224 PB - Zenodo CY - Geneva AN - OPUS4-57352 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER -