TY - JOUR A1 - Kaufmann, Jan Ole A1 - Brangsch, J. A1 - Kader, A. A1 - Saatz, Jessica A1 - Mangarova, D. B. A1 - Zacharias, M. A1 - Kempf, W. E. A1 - Schwaar, T. A1 - Ponader, Marco A1 - Adams, L. C. A1 - Möckel, J. A1 - Botnar, R. M. A1 - Taupitz, M. A1 - Mägdefessel, L. A1 - Traub, Heike A1 - Hamm, B. A1 - Weller, Michael G. A1 - Makowski, M. R. T1 - ADAMTS4-specific MR-probe to assess aortic aneurysms in vivo using synthetic peptide libraries N2 - The incidence of abdominal aortic aneurysms (AAAs) has substantially increased during the last 20 years and their rupture remains the third most common cause of sudden death in the cardiovascular field after myocardial infarction and stroke. The only established clinical parameter to assess AAAs is based on the aneurysm size. Novel biomarkers are needed to improve the assessment of the risk of rupture. ADAMTS4 (A Disintegrin And Metalloproteinase with ThromboSpondin motifs 4) is a strongly upregulated proteoglycan cleaving enzyme in the unstable course of AAAs. In the screening of a one-bead-one-compound library against ADAMTS4, a low-molecular-weight cyclic peptide is discovered with favorable properties for in vivo molecular magnetic resonance imaging applications. After identification and characterization, it’s potential is evaluated in an AAA mouse model. The ADAMTS4-specific probe enables the in vivo imaging-based prediction of aneurysm expansion and rupture. KW - Peptide KW - Peptide library KW - OBOC library KW - Combinatorial chemistry KW - Peptide aptamers KW - Binding molecule KW - Affinity KW - Synthetic peptides KW - Contrast agent KW - Magnetic resonance imaging KW - One-bead-one-compound library KW - On-chip screening KW - Lab-on-a-chip KW - MALDI-TOF MS KW - SPR KW - Surface plasmon resonance KW - Alanine scan KW - Fluorescence label KW - MST KW - Docking KW - Chelate PY - 2022 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-560930 DO - https://doi.org/10.1038/s41467-022-30464-8 N1 - Geburtsname von Ponader, Marco: Wilke, M. - Birth name of Ponader, Marco: Wilke, M. VL - 13 IS - 1 SP - 1 EP - 18 PB - Springer Nature Limited CY - Heidelberg AN - OPUS4-56093 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Döring, Sarah A1 - Tscheuschner, Georg A1 - Flemig, Sabine A1 - Weller, Michael G. A1 - Konthur, Zoltán T1 - Cost-Effective Method for Full-Length Sequencing of Monoclonal Antibodies from Hybridoma Cells N2 - Background: Monoclonal antibodies play an important role in therapeutic and analytical applications. For recombinant expression, the coding sequences of the variable regions of the heavy and light chains are required. In addition, cloning antibody sequences, including constant regions, reduces the impact of hybridoma cell loss and ensures preservation of the naturally occurring full antibody sequence. Method: We combined amplification of IgG antibody variable regions from hybridoma mRNA with an advanced method for fulllength cloning of monoclonal antibodies in a simple two-step workflow. Following Sanger sequencing and evaluation of consensus sequences, the best matching variable, diversity, and joining (V-(D-)J) gene segments were identified according to identity scores from IgBLAST reference sequences. Simultaneously, the mouse IgG subclass was determined at the DNA level based on isotype-specific sequence patterns in the CH1 domain. Knowing the DNA sequence of V-(D-)J recombination responsible for the complementary determining region 3 (CDR 3), variable region-specific primers were designed and used to amplify the corresponding antibody constant regions. Results: To verify the approach, we applied it to the hybridoma clone BAM-CCMV-29-81 and obtained identical full-length antibody sequences as with RNA Illumina sequencing. Further validation at the protein level using an established MALDI-TOF MS-fingerprinting protocol showed that five out of six genetically encoded CDR domains of the monoclonal antibody BAM-CCMV-29-81 could be efficiently correlated. Conclusion: This simple, streamlined method enables the cost-effective determination of the full-length sequence of monoclonal antibodies from hybridoma cell lines, with the added benefit of obtaining the DNA sequence of the antibody ready for recombinant expression. KW - Full-length antibody sequencing KW - Hybridoma cell loss KW - MALDI-TOF MS KW - Immunoglobulin isotyping KW - RNA Illumina sequencing PY - 2025 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-639599 DO - https://doi.org/10.3390/antib14030072 SN - 2073-4468 VL - 14 IS - 3 SP - 1 EP - 17 PB - MDPI CY - Basel AN - OPUS4-63959 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Kricheldorf, H. R. A1 - Weidner, Steffen T1 - The Ring-Opening Polymerisation-Polycondensation (ROPPOC) Approach to cyclic Polymers N2 - A new concept called “Ring-Opening Polymerization (ROP) combined with simultaneous POlyCondensation” (ROPPOC) is presented and discussed. This synthetic strategy is based on the intermediate formation of chains having two end groups that can react with each other. The ROPPOC syntheses are subdivided into three groups according to the nature of the chain ends: two ionic end groups, one ionic and one covalent chain end and a combination of two reactive covalent end groups may be involved, depending on the catalyst. The usefulness for the preparation of cyclic polymers is discussed with a review of numerous previously published examples. These examples concern to following classes of cyclic polymers: polypeptides, polyamides, polyesters, including polycarbonates, and cyclic polysiloxanes. It is demonstrated, that the results of certain ROPPOC syntheses are in contradiction to the Jacobson-Stockmayer theory. Finally, the usefulness of ROPPOCs for the detection of polydisperse catenanes is discussed. KW - Ring-opening Polymerisation KW - MALDI-TOF MS KW - ROPPOC KW - Cyclic PY - 2020 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-508509 DO - https://doi.org/10.1002/marc.202000152 SP - 2000152 PB - Wiley AN - OPUS4-50850 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Kricheldorf, H. R. A1 - Weidner, Steffen T1 - Polymerization of L-lactide with SnCl2: A Low Toxic and Eco-friendly Catalyst N2 - Polymerizations of L-lactide catalyzed either by neat SnCl2 or by SnCl2 + difunctional cocatalysts were conducted in bulk at 180, 160 and 140 °C with variation of the Lac/Cat ratio and time. With neat SnCl2 poly(L-lactide) having weight average molecular weights (uncorrected Mw’s) up to 190 000 g mol−1 were obtained mainly consisting of linear chains. Addition of salicylic acid or 1,1-bisphenol yielded a higher fraction of cyclic polylactides but lower molecular weights. Furthermore, SnCl2 was compared with Bu2SnCl2 and various other metal chlorides and the best results were obtained with SnCl2. With ethyl L-lactate as initiator SnCl2-catalyzed ROPs were performed at 120 °C and the lac/initiator ratio was varied. All these experiments were conducted under conditions allowing for comparison with ROPs catalyzed with neat Sn(II)-2-ethyhexanoate. Such a comparison was also performed with ε-caprolactone as monomer. KW - Catalyst KW - Polylactide KW - MALDI-TOF MS KW - Polycondensation PY - 2021 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-520517 DO - https://doi.org/10.1007/s10924-020-02042-w SN - 1566-2543 SP - 1 EP - 13 PB - Springer Nature AN - OPUS4-52051 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Kricheldorf, H. R. A1 - Weidner, Steffen T1 - High molecular weight poly(l-lactide) via ring-opening polymerization with bismuth subsalicylate-The role of cocatalysts N2 - The catalytic potential of bismuth subsalicylate (BiSub), a commercial drug, for ring-opening polymerization (ROP) of L-lactide was explored by variation of co-catalyst and polymerization time. Various monofunctional phenols or carboxylic acids, aromatic ortho-hydroxy acids and diphenols were examined as potential co-catalysts. 2,2´-Dihydroxybiphenyl proved to be the most successful co-catalyst yielding weight average molecular weights (uncorrected Mw values up to 185 000) after optimization of reaction time and temperature. Prolonged heating (>1-2h) depending on catalyst concentration) caused thermal degradation. In polymerization experiments with various commercial Bi(III) salts a better alternative to BiSub was not found. By means of matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry a couple of unusual and unexpected transesterification reactions were discovered. Finally, the effectiveness of several antioxidants and potential catalyst poisons was explored, and triphenylphosphine was found to be an effective catalyst poison. KW - Polylactide KW - MALDI-TOF MS KW - Ring-opening polymerization KW - Bismuth PY - 2020 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-519513 DO - https://doi.org/10.1002/app.50394 SN - 0021-8995 VL - 138 IS - 19 SP - 50394 PB - Wiley AN - OPUS4-51951 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Kricheldorf, H. R. A1 - Weidner, Steffen T1 - ROP of L-lactide and ε-caprolactone catalyzed by tin(ii) and tin(iv) acetates–switching from COOH terminated linear chains to cycles N2 - The catalytic potential of tin(II)acetate, tin(IV)acetate, dibutyltin-bis-acetate and dioctyl tin-bis-acetate was compared based on polymerizations of L-lactide conducted in bulk at 160 or 130C. With SnAc2 low-Lac/Cat ratios (15/1–50/1) were studied and linear chains having one acetate and one carboxyl end group almost free of cyclics were obtained. Higher monomer/catalyst ratios and lower temperatures favored formation of cycles that reached weight average molecular weights (Mw's) between 100,000 and 2,500,000. SnAc4 yielded mixtures of cycles and linear species under all reaction conditions. Dibutyltin- and dioctyl tin bis-acetate yielded cyclic polylactides under most reaction conditions with Mw's in the range of 20,000–80,000. Ring-opening polymerizations performed with ε-caprolactone showed similar trends, but the formation of COOH-terminated linear chains was significantly more favored compared to analogous experiments with lactide. The reactivity of the acetate catalysts decreased in the following order: SnAc2> SnAc4>Bu2SnAc2 Oct2SnAc2. KW - Catalyst KW - MALDI-TOF MS KW - Ring-opening polymerization KW - Tin acetates KW - Polylactide PY - 2021 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-520831 DO - https://doi.org/10.1002/pol.20200866 SP - 1 EP - 12 PB - Wiley Online Library AN - OPUS4-52083 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Weidner, Steffen A1 - Kricheldorf, H. R. A1 - Scheliga, F. T1 - Ring-expansion copolymerization of L-lactide and glycolide N2 - 1:1 Copolymerizations of glycolide (GL) and L-lactide (LA) is performed in bulk at 100°C and at 160°C with four cyclic tin catalysts. The resulting copolyesters are characterized by SEC measurements, 1H and 13C NMR spectroscopy and by MALDI TOF mass spectrometry. At 160°C and longer reaction time (22 h) nearly complete conversion of both monomers is achieved, and cyclic copolymers with nearly random sequences are formed. At shorter times (0.5-3.0 h, depending on catalyst) the conversion of LA is incomplete, and only cyclics having even numbers of lactyl units are obtained. At 100°C at 22 h again cycles mainly consisting of even numbered lactyl units are formed, but with even and odd numbers of glycolyl units. Copolymerization of lactide at 160°C with small amounts of GL show that formation of high Tm crystallites (Tm > 190°C) is hindered even when only > 2% of GL is added. For polyglycolide containing a smaller amount of lactide complete solubility in hexafluoroisopropanol is only observed around and above 20 mol% of lactide. KW - Ring-expansion polymerization KW - Copolymerization KW - MALDI-TOF MS KW - L-lactide KW - Glycolide KW - Crystallization PY - 2021 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-520270 DO - https://doi.org/10.1002/macp.202000307 SN - 1022-1352 VL - 22 IS - 3 SP - 307 PB - WileyVCH AN - OPUS4-52027 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Kricheldorf, H. R. A1 - Weidner, Steffen T1 - Reply to the comment on “synthesis of cyclic polymers and flaws of the Jacobson-Stockmayer theory” by R. Szymanski N2 - In a recent publication the authors have presented theoretical and experimental results indicating that the Jacobson–Stockmayer (JS) theory does not provide a correct description of reversible polycondensations for all polymers and for high conversions (e.g. polycondensation in bulk). In this context reversibility means that all condensation step whether resulting in chain growth or in cyclization are reversible and thus, part of an equilibrium. The first two sections of that paper were focused on the demonstration that small, and above all, large cycles can be formed by end-to-end (ete) cyclization in reversible like in irreversible polycondensations. A significant contribution of ete-cyclization to the course of reversible polycondensations was denied by J + S apparently as a contribution to Florýs dogma, that the end groups of long polymer chains will never meet. KW - Polylactide KW - MALDI-TOF MS KW - Jacobsen-Stockmayer theory PY - 2020 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-513985 DO - https://doi.org/10.1039/D0PY01118E VL - 11 IS - 38 SP - 6226 EP - 6228 PB - Royal Society of Chemistry AN - OPUS4-51398 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Kricheldorf, H. A1 - Weidner, Steffen T1 - Low Molar Mass Cyclic Poly(L-lactide)s: Separate Transesterification Reactions of Cycles and Linear Chains in the Solid State N2 - L-Lactide (LA) was polymerized with neat tin(II) 2-ethylhexanoate (SnOct2) in toluene at 115 °C at low concentration with variation of the LA/Cat ratio. Cyclic polylactides (cPLAs) with number average molecular weights (Mn) between 7 000 and 17 000 were obtained. MALDI-TOF mass spectrometry also revealed the formation of a few percent of linear chains. Crystalline cPLAs with Mn around 9 000 and 14 000 were annealed at 140 °C in the presence of ScOct2 or dibutyl-2-stanna-1,3-dithiolane (DSTL). Simultaneously, crystallites of extended linear chains and crystallites of extended cycles were formed regardless of the catalyst, indicating that transesterification reaction proceeded different for linear chains and for cycles, governed by thermodynamic control. The formation of extended chain crystallites with low dispersity indicates the existence of symproportionation of short and long chains. A complementary experiment was carried out with a PLA ethyl ester composed mainly of linear chains with a small fraction of cycles KW - Polylactide KW - MALDI-TOF MS KW - Annealing PY - 2024 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-606228 DO - https://doi.org/10.1039/D4SM00567H SN - 1744-6848 SP - 1 EP - 12 PB - Royal Society of Chemistry (RSC) AN - OPUS4-60622 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Kricheldorf, H. A1 - Scheliga, F. A1 - Weidner, Steffen T1 - Syntheses of Cyclic Poly(l-lactide)s by Means of Zinc-Based Ring-Opening Polymerization with Simultaneous Polycondensation (ROPPOC) Catalysts N2 - Ring-opening polymerizations of l-lactide are studied in bulk at 140 or 160 °C with zinc n-hexanoate, zinc 4-chlorothiophenolate, and zinc pentafluoro thiophenolate (ZnSPF) as catalysts. The reactivity increases in the given order. With all three catalysts a high fraction of cycles is obtained only at polymerization (annealing) times around 7 d. With ZnSPF weight average molecular weights (Mw) up to 178 000, a Tm around 199 °C and a 𝚫Hm around 99 J g−1 were achieved. The samples annealed for 4 or 7 d also display a saw tooth pattern of the mass peak distribution in the matrix-assisted laser desorption/ionization time of flight spectra indicating transesterification reactions across the surface of extended ring crystals. This process optimizes the thermodynamical properties of the crystalline cyclic polylactides and is responsible for the high Tm and 𝚫Hm values. KW - Polylactide KW - MALDI-TOF MS KW - Ring opening polymerization KW - Polymerization PY - 2023 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-578264 DO - https://doi.org/10.1002/macp.202300070 SN - 1022-1352 SP - 202300070 PB - Wiley VHC-Verlag AN - OPUS4-57826 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER -