TY - JOUR A1 - Doublet, V. A1 - Poeschl, Y. A1 - Gogol-Döring, A. A1 - Alaux, C. A1 - Annoscia, D. A1 - Aurori, C. A1 - Barribeau, S. M. A1 - Bedoya-Reina, O. C. A1 - Brown, M. J. F. A1 - Bull, J. C. A1 - Flenniken, M. L. A1 - Galbraith, D. A. A1 - Genersch, E. A1 - Gisder, S. A1 - Grosse, I. A1 - Holt, H. L. A1 - Hultmark, D. A1 - Lattorff, H. M. G. A1 - Le Conte, Y. A1 - Manfredini, F. A1 - McMahon, Dino Peter A1 - Moritz, R. F. A. A1 - Nazzi, F. A1 - Niño, E. L. A1 - Nowick, K. A1 - Van Rij, R. P. A1 - Paxton, R. J. A1 - Grozinger, C. M. T1 - Unity in defence: honeybee workers exhibit conserved molecular responses to diverse pathogens N2 - Background: Organisms typically face infection by diverse pathogens, and hosts are thought to have developed specific responses to each type of pathogen they encounter. The advent of transcriptomics now makes it possible to test this hypothesis and compare host gene expression responses to multiple pathogens at a genome-wide scale. Here, we performed a meta-analysis of multiple published and new transcriptomes using a newly developed bioinformatics approach that filters genes based on their expression profile across datasets. Thereby, we identified common and unique molecular responses of a model host species, the honey bee (Apis mellifera), to its major pathogens and parasites: the Microsporidia Nosema apis and Nosema ceranae, RNA viruses, and the ectoparasitic mite Varroa destructor, which transmits viruses. Results: We identified a common suite of genes and conserved molecular pathways that respond to all investigated pathogens, a result that suggests a commonality in response mechanisms to diverse pathogens. We found that genes differentially expressed after infection exhibit a higher evolutionary rate than non-differentially expressed genes. Using our new bioinformatics approach, we unveiled additional pathogen-specific responses of honey bees; we found that apoptosis appeared to be an important response following microsporidian infection, while genes from the immune signalling pathways, Toll and Imd, were differentially expressed after Varroa/virus infection. Finally, we applied our bioinformatics approach and generated a gene co-expression network to identify highly connected (hub) genes that may represent important mediators and regulators of anti-pathogen responses. Conclusions: Our meta-analysis generated a comprehensive overview of the host metabolic and other biological processes that mediate interactions between insects and their pathogens. We identified key host genes and pathways that respond to phylogenetically diverse pathogens, representing an important source for future functional studies as well as offering new routes to identify or generate pathogen resilient honey bee stocks. The statistical and bioinformatics approaches that were developed for this study are broadly applicable to synthesize information across transcriptomic datasets. These approaches will likely have utility in addressing a variety of biological questions. KW - Coexpression KW - Apis mellifera KW - Nosema KW - Varroa destructor KW - DWV KW - IAPV KW - RNA virus KW - Meta-analysis KW - Transcriptomics PY - 2017 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-410439 DO - https://doi.org/10.1186/s12864-017-3597-6 SN - 1471-2164 VL - 18 SP - 207 EP - 224 AN - OPUS4-41043 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Swaraj, S. A1 - Dietrich, Paul A1 - Unger, Wolfgang T1 - Simultaneous surface and bulk sensitive XAS measurements of magnetic particle clusters N2 - Magnetic iron oxide nanoparticle clusters (mnpc) coated with organic stabilizers were investigated using scanning transmission x-ray microscopy (STXM). Simultaneous surface and bulk sensitive Fe L₃ edge absorption spectra, obtained using a photomultiplier tube and a channeltron, were used to detect subtle changes in the oxidation state in the surface and bulk of Iron Oxide mnpc. The effectiveness of this mode of STXM operation is demonstrated for these nanoparticle clusters. T2 - X-Ray Microscopy Conference 2016 (XRM 2016) CY - Oxford, UK DA - 15.08. 2016 KW - Fe L3 edge absorption spectra KW - Scanning transmission x- ray microscopy KW - Magnetic iron oxide nanoparticle clusters KW - XAS PY - 2017 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-410576 UR - http://iopscience.iop.org/article/10.1088/1742-6596/849/1/012014/pdf DO - https://doi.org/10.1088/1742-6596/849/1/012014 SN - 1742-6588 VL - 849 SP - 012014, 1 EP - 012014, 5 PB - IOP Publishing AN - OPUS4-41057 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Tuma, Dirk A1 - Kumbhar, V. S. A1 - Lee, Y. R. A1 - Ra, C. S. A1 - Min, B.-K. A1 - Shim, J.-J. T1 - Modified chemical synthesis of MnS nanoclusters on nickel foam for high performance all-solid-state asymmetric supercapacitors N2 - Novel MnS nanoclusters were synthesized on nickel foam (NF) using a successive ionic layer adsorption and reaction (SILAR) method. MnS nanoclusters with different sizes were obtained by varying the number of deposition cycles. The crystal structure, chemical composition, and surface microstructure of the electrodes were characterized by X-ray diffraction, X-ray photoelectron spectroscopy, field Emission scanning electron microscopy, and high-resolution transmission electron microscopy. The electrochemical behavior of the MnS nanoclusters was examined by cyclic voltammetry, galvanostatic charge–discharge, cycling test, and electrochemical impedance spectroscopy. The MnS nanoclusters prepared with 90 SILAR cycles showed the best supercapacitance in a 6 M KOH aqueous electrolyte with a specific capacitance of 828 F/g at a scan rate of 5 mV/s and cycling stability of 85.2 % after 5000 charge–discharge cycles. Moreover, an asymmetric supercapacitor (ASC) was assembled with the as-prepared MnS electrode on NF as the positive electrode, hydrothermally prepared reduced graphene oxide (rGO) on NF as the negative electrode, and PVA–KOH gel as the electrolyte. The MnS@NF//rGO@NF ASC showed excellent electrochemical performance with maximum energy and power densities of 34.1 Wh/kg and 12.8 kW/kg, respectively. The ASC also showed a capacitive retention of 86.5 % after 2000 charge–discharge cycles, highlighting its practical application for energy storage. KW - Nanocluster KW - Electrochemical behavior KW - Asymmetric supercapacitor KW - Graphene oxide PY - 2017 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-403147 DO - https://doi.org/10.1039/c7ra00772h SN - 2046-2069 VL - 7 IS - 27 SP - 16348 EP - 16359 PB - The Royal Society of Chemistry CY - London AN - OPUS4-40314 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Maul, Ronald A1 - Greer, B. A1 - Campbell, K. A1 - Elliott, C.T. T1 - Detection of freshwater cyanotoxins and measurement of masked microcystins in tilapia from Southeast Asian aquaculture farms N2 - Recently, there has been a rise in freshwater harmful algal blooms (HABs) globally, as well as increasing aquaculture practices. HABs can produce cyanotoxins, many of which are hepatotoxins. An ultra-performance liquid chromatography tandem mass spectrometry method was developed and validated for nine cyanotoxins across three classes including six microcystins, nodularin, cylindrospermopsin and anatoxin-a. The method was used to analyse free cyanotoxin(s) in muscle (n = 34), liver (n = 17) and egg (n = 9) tissue samples of 34 fish sourced from aquaculture farms in Southeast Asia. Conjugated microcystin was analysed by Lemieux oxidation to ascertain the total amount of microcystin present in muscle. Some tilapia accumulated free microcystin-LR in the muscle tissue at a mean of 15.45 μg/kg dry weight (dw), with total microcystin levels detected at a mean level of 110.1 μg/kg dw, indicating that the amount of conjugated or masked microcystin present in the fish muscle accounted for 85% of the total. Higher levels of cyanotoxin were detected in the livers, with approximately 60% of those tested being positive for microcystin-LR and microcystin-LF, along with cylindrospermopsin. Two fish from one of the aquaculture farms contained cylindrospermopsin in the eggs; the first time this has been reported. The estimated daily intake for free and total microcystins in fish muscle tissue was 2 and 14 times higher, respectively, than the tolerable daily intake value. This survey presents the requirement for further monitoring of cyanotoxins, including masked microcystins, in aquaculture farming in these regions and beyond, along with the implementation of guidelines to safeguard human health. KW - Harmful algal bloom KW - UPLC-MS/MS KW - Bioaccumulation KW - Human health PY - 2017 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-404669 DO - https://doi.org/10.1007/s00216-017-0352-4 SN - 1618-2642 SN - 1618-2650 VL - 409 IS - 16 SP - 4057 EP - 4069 PB - Springer CY - Heidelberg AN - OPUS4-40466 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Yasutaka, T. A1 - Imoto, Y. A1 - Kurosawa, A. A1 - Someya, M. A1 - Higashino, K. A1 - Kalbe, Ute A1 - Sakanakura, H. T1 - Effects of colloidal particles on the results and reproducibility of batch leaching tests for heavy metal-contaminated soil N2 - A simple batch test leaching procedure is used in many countries, as a compliance test, to evaluate the leaching of mainly inorganic substances from soil. However, agitating certain types of soil and then passing the solution through a membrane filter with 0.45-µm pores yields filtrates that have been colored by the colloidal particles. These colloids might affect the results of the inorganic substances obtained in the batch tests. In this study, we evaluated the effects of colloidal particles on the results and the reproducibility of batch tests on contaminated soil using different agitation methods and membrane filters with different pore sizes. The leaching behaviors of As, Pb, Se, F and Cl from three types of soil were studied. The As and Pb concentrations in the leachates of some types of soil were clearly affected by the amount of colloidal particles with a diameter of 0.10–0.45 µm and by the agitation method used. This was probably because As and Pb were present mainly in the particulate form in the leachate that had been passed through a membrane filter with 0.45-µm pores. This is not the case for every type of soil. The results of batch leaching tests showed that not only dissolved but also colloidal forms with a diameter of 0.10–0.45 µm might be included and that the existence of colloidal particles in the leachate decreases the batch leaching test reproducibility. KW - Leaching KW - Contaminated soil KW - Heavy metals KW - Colloids PY - 2017 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-429940 UR - https://www.sciencedirect.com/science/article/pii/S0038080617301166#! DO - https://doi.org/10.1016/j.sandf.2017.08.014 SN - 0038-0806 VL - 57 IS - 5 SP - 861 EP - 871 PB - Elsevier B.V. AN - OPUS4-42994 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Tahri, K. A1 - Tiebe, Carlo A1 - El Bari, N. A1 - Hübert, Thomas A1 - Bouchikhi, B. T1 - Geographical classification and adulteration detection of cumin by using electronic sensing coupled to multivariate analysis N2 - The objective of this work is to report the improvement obtained in the discrimination of complex aroma and taste with subtle differences in odor and flavor, by the use of fast suitable procedures for the cases of measurements in the field demanding decision-making in real time. The proposed electronic sensing systems, formed by an E-nose and VE-tongue, were used to discriminate cumin cultivars from different geographical origins, as well as to quantify the cumin adulteration percentages by using unsupervised and supervised chemometric tools. Thus, the results obtained are sufficiently encouraging as a starting point for the development of new electronic sensing systems with more improvement such the reliability of the sensors’ performance as well as the chemometric tools in order to deal with a complex dataset. KW - VE-tongue KW - E-nose KW - Chemometric tools KW - Cumin discrimination KW - Geographical origins KW - Adulteration detection PY - 2017 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-409735 DO - https://doi.org/10.1016/j.protcy.2017.04.102 SN - 2212-0173 VL - 27 SP - 240 EP - 241 PB - Elsevier B.V. AN - OPUS4-40973 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Lauer, Franziska A1 - Seifert, Stephan A1 - Kneipp, Janina A1 - Weidner, Steffen T1 - Simplifying the Preparation of Pollen Grains for MALDI-TOF MS Classification N2 - Matrix-assisted laser desorption ionization time of flight mass spectrometry (MALDI-TOF MS) is a well-implemented analytical technique for the investigation of complex biological samples. In MS, the sample preparation strategy is decisive for the success of the measurements. Here, sample preparation processes and target materials for the investigation of different pollen grains are compared. A reduced and optimized sample preparation process prior to MALDI-TOF measurement is presented using conductive carbon tape as target. The application of conductive tape yields in enhanced absolute signal intensities and mass spectral pattern information, which leads to a clear separation in subsequent pattern analysis. The results will be used to improve the taxonomic differentiation and identification, and might be useful for the development of a simple routine method to identify pollen based on mass spectrometry. KW - PCA KW - MALDI-TOF MS KW - Conductive carbon tape KW - Pollen KW - Sample pretreatment PY - 2017 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-392885 UR - http://www.mdpi.com/1422-0067/18/3/543/ DO - https://doi.org/10.3390/ijms18030543 SN - 1422-0067 VL - 18 IS - 3 SP - 543 EP - 554 PB - MDPI AG CY - Basel, Switzerland AN - OPUS4-39288 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Hahn, Marc Benjamin A1 - Meyer, Susann A1 - Schröter, Maria-Astrid A1 - Seitz, H. A1 - Kunte, Hans-Jörg A1 - Solomun, Tihomir A1 - Sturm, Heinz T1 - Direct electron irradiation of DNA in fully aqueous environment. Damage determination in combination with Monte Carlo simulations N2 - We report on a study in which plasmid DNA in water was irradiated with 30 keV electrons generated by a scanning electron microscope and passed through a 100 nm thick Si3N4 membrane. The corresponding Monte Carlo simulations suggest that the kinetic energy spectrum of the electrons throughout the water is dominated by low energy electrons (<100 eV). The DNA radiation damage, single-strand breaks (SSB) and double-strand breaks (DSB), was determined by electrophoresis. The median lethal dose of D1/2 = 1.7 ± 0.3 Gy was found to be much smaller compared to partially or fully hydrated DNA irradiated under vacuum conditions. The ratio of DSB to SSB was found to be (1:12) as compared to 1:88) found for hydrated DNA. Our method enables quantitative measurements of radiation damage to biomolecules (DNA, proteins) in solutions under varying conditions (pH, salinity, cosolutes) for an electron energy range which is difficult to probe by standard methods. KW - Plasmid DNA in water KW - Monte Carlo simulation KW - Low energy electrons KW - DNA radiation damage KW - Single-strand break (SSB) KW - Double-strand break (DSB) KW - Lethal dose KW - Radiation damage to biomolecules KW - Solutions (pH, salinity, cosolutes) PY - 2017 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-386981 DO - https://doi.org/10.1039/C6CP07707B SN - 1463-9076 SN - 1463-9084 VL - 19 IS - 3 SP - 1798 EP - 1805 PB - Royal Society of Chemistry AN - OPUS4-38698 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Hahn, Marc Benjamin A1 - Meyer, Susann A1 - Kunte, Hans-Jörg A1 - Solomun, Tihomir A1 - Sturm, Heinz T1 - Measurements and simulations of microscopic damage to DNA in water by 30 keV electrons: A general approach applicable to other radiation sources and biological targets N2 - The determination of the microscopic dose-damage relationship for DNA in an aqueous environment is of a fundamental interest for dosimetry and applications in radiation therapy and protection. We combine geant4 particle-scattering simulations in water with calculations concerning the movement of biomolecules to obtain the energy deposit in the biologically relevant nanoscopic volume. We juxtaposition these results to the experimentally determined damage to obtain the dose-damage relationship at a molecular level. This approach is tested for an experimentally challenging system concerning the direct irradiation of plasmid DNA (pUC19) in water with electrons as primary particles. Here a microscopic target model for the plasmid DNA based on the relation of lineal energy and radiation quality is used to calculate the effective target volume. It was found that on average fewer than two ionizations within a 7.5-nm radius around the sugar-phosphate backbone are sufficient to cause a single strand break, with a corresponding median lethal energy deposit being E1/2=6±4 eV. The presented method is applicable for ionizing radiation (e.g., γ rays, x rays, and electrons) and a variety of targets, such as DNA, proteins, or cells. KW - DNA KW - Radiation damage KW - Dosimetry KW - DNA radiation damage KW - Single-strand break (SSB) KW - Double-strand break (DSB) KW - Low energy electrons KW - Monte Carlo simulation KW - Radiation damage to biomolecules KW - Plasmid DNA in water KW - Lethal dose KW - Solutions (pH, salinity, cosolutes) KW - Geant4 KW - Microdosimetry PY - 2017 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-404244 DO - https://doi.org/10.1103/PhysRevE.95.052419 SN - 2470-0045 SN - 2470-0053 VL - 95 IS - 5 SP - 052419-1 EP - 052419-8 PB - American Physical Society CY - USA AN - OPUS4-40424 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Hahn, Marc Benjamin A1 - Susann, Meyer A1 - Schröter, Maria-Astrid A1 - Kunte, Hans-Jörg A1 - Solomun, Tihomir A1 - Sturm, Heinz T1 - DNA protection by ectoine from ionizing radiation: molecular mechanisms N2 - Ectoine, a compatible solute and osmolyte, is known to be an effective protectant of biomolecules and whole cells against heating, freezing and extreme salinity. Protection of cells (human keratinocytes) by ectoine against ultraviolet radiation has also been reported by various authors, although the underlying mechanism is not yet understood. We present the first electron irradiation of DNA in a fully aqueous environment in the presence of ectoine and at high salt concentrations. The results demonstrate effective protection of DNA by ectoine against the induction of single-strand breaks by ionizing radiation. The effect is explained by an increase in low-energy electron scattering at the enhanced free-vibrational density of states of water due to ectoine, as well as the use of ectoine as an ˙OH-radical scavenger. This was demonstrated by Raman spectroscopy and electron paramagnetic resonance (EPR). KW - Ectoine KW - DNA KW - Radiation protection KW - Ionizing radiation KW - Compatible solute KW - Biomolecules KW - Sodium chloride KW - Aqueous solution KW - Hydroxyectoine KW - Raman spectroscopy KW - Electron irradiation KW - Cancer KW - Radical scavenger KW - Low energy electrons KW - Hydroxyl radical KW - OH-radical KW - Ectoin KW - UV radiation KW - Sun KW - Salt KW - Radiation therapy PY - 2017 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-419332 UR - http://pubs.rsc.org/en/content/articlehtml/2017/cp/c7cp02860a DO - https://doi.org/10.1039/C7CP02860A SN - 1463-9076 VL - 19 IS - 37 SP - 25717 EP - 25722 PB - Royal Society of Chemistry CY - United Kingdom AN - OPUS4-41933 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER -