TY - JOUR A1 - von Boehn, B. A1 - Scholtz, Lena A1 - Imbihl, R. T1 - Reactivity and Stability of Ultrathin VOx Films on Pt(111) in Catalytic Methanol Oxidation N2 - The growth of ultrathin layers of VOx (<12 monolayers) on Pt(111) and the activity of these layers in catalytic methanol oxidation at 10−4 mbar have been studied with low-energy electron difraction, Auger electron spectroscopy, rate measurements, and with photoemission electron microscopy. Reactive deposition of V in O2 at 670 K obeys a Stranski–Krastanov growth mode with a (√3 × √3)R30° structure representing the limiting case for epitaxial growth of 3D-VOx. The activity of VOx/Pt(111) in catalytic methanol oxidation is very low and no redistribution dynamics is observed lifting the initial spatial homogeneity of the VOx layer. Under reaction conditions, part of the surface vanadium difuses into the Pt subsurface region. Exposure to O2 causes part of the V to difuse back to the surface, but only up to one monolayer of VOx can be stabilized in this way at 10−4 mbar. KW - Vanadium oxide catalysts KW - Pt(111) KW - Supported catalyst KW - Methanol oxidation KW - Stranski–Krastanow growth PY - 2020 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-517376 DO - https://doi.org/10.1007/s11244-020-01321-z SN - 1022-5528 VL - 63 IS - 15-18 SP - 1545 EP - 1556 PB - Springer AN - OPUS4-51737 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Bertovic, Marija T1 - Reliability in NDT and the influence of human factors N2 - This presentation offers a holistic view on the assessment of reliability of NDT including the intrinsic reliability (typically expressed in terms of probability of detection (POD) curves), application, human and organisational factors. In addition to POD, advanced methods such as multiparameter POD, volume POD and POD for combined data are presented. Human and organisational factors in NDT require a systematic approach, i.e. it is not just the individual that determines how the inspections are carried out but also the interactions of individuals with the technology, team, organisation and the extra-organisational environment. Lessons learned from the literature as well as from own studies are presented. T2 - DFG SHM Netzwerk CY - Berlin, Germany DA - 27.01.2020 KW - Human Factors KW - Non-destructive testing (NDT) KW - Reliability PY - 2020 AN - OPUS4-51919 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Völker, Christoph T1 - Prospects and challenges of data-driven NDT - current work in junior research group 8.K N2 - We have arrived in the data age. But why is it so difficult for the NDT community to achieve real breakthroughs with data-driven science? In this seminar, we will take a brief look at the evolution of mainstream data science to understand why the most exciting times are perhaps just ahead. We will give an overview of our activities in the junior research group 8.K which are aimed at enabling the next generation of data science methods in NDT. The seminar addresses the two main work fields of our group: semantic data management and the handling of limited data resources. The first field addresses the problem that a uniform representation of our data is not yet available. However, knowledge creation in data science - whose main contribution lies in the analysis of distributed resources - requires common data access based on a collective understanding. To achieve this, we present an ontology-based approach. Ontologies are already the core of many intelligent systems such as building information models or research databases. We summarize some of the basic principles of this technology and describe our approach to create an NDT ontology. The second field ties in with the first and addresses the application of data-based methods in engineering practice. Especially in the field of non-destructive testing many successful applications have been published. In most cases, however, the creation of referenced data is extremely expensive and therefore much sparser than in other research areas. As a result, the available data may cover only one scenario, so that common benchmarks often do not reflect the actual performance of the model in practical applications. Estimates that quantify the transferability from one scenario to another are not only necessary to overcome this challenge - they also prove to be a powerful tool for the strategic expansion of what we consider knowledge. T2 - Abteilungsseminar der Abteilung 8 CY - Online meeting DA - 18.11.2020 KW - Machine Learning KW - Small Data KW - Semantic Web KW - Materials Discovery KW - Explainable AI PY - 2020 AN - OPUS4-51811 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Völker, Christoph T1 - Artificial intelligence in NDT (AI NDT) a networking workshop N2 - Data-driven research is considered the new paradigm in science. In this field, data is the new resource from which knowledge is extracted that is too complex for traditional methods. Several factors such as national funding and advances in information technology, are driving the development. In particular, the creation of databases and the analysis of data with artifical intelligence are playing an important role in establishing the new paradigm. However, there are numerous challenges that must be overcome to realize the full potential of data-driven methods. This talk sets the stage for the upcoming workshop by reviewing some of the historical developments and the current state of data-driven science in NDT and materials science. T2 - Workshop on Artificial Intelligence in NDT (AI-NDT) CY - Online meeting DA - 30.10.2020 KW - Data Science KW - Materials Informatics KW - NDT PY - 2020 AN - OPUS4-51812 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Sanabria, S. J. A1 - Baensch, Franziska A1 - Zauner, M. A1 - Niemz, P. T1 - In‑situ quantification of microscopic contributions of individual cells to macroscopic wood deformation with synchrotron computed tomography N2 - Wood-based composites hold the promise of sustainable construction. Understanding the influence on wood cellular microstructure in the macroscopic mechanical behavior is key for engineering highperformance composites. In this work, we report a novel Individual Cell Tracking (ICT) approach for in-situ quantification of nanometer-scale deformations of individual wood cells during mechanical loading of macroscopic millimeter-scale wood samples. Softwood samples containing > 104 cells were subjected to controlled radial tensile and longitudinal compressive load in a synchrotron radiation micro-computed tomography (SRμCT) setup. Tracheid and wood ray cells were automatically segmented, and their geometric variations were tracked during load. Finally, interactions between microstructure deformations (lumen geometry, cell wall thickness), cellular arrangement (annual growth rings, anisotropy, wood ray presence) with the macroscopic deformation response were investigated. The results provide cellular insight into macroscopic relations, such as anisotropic Poisson effects, and allow direct observation of previously suspected wood ray reinforcing effects. The method is also appropriate for investigation of non-linear deformation effects, such as buckling and deformation recovery after failure, and gives insight into less studied aspects, such as changes in lumen diameter and cell wall thickness during uniaxial load. ICT provides an experimental tool for direct validation of hierarchical mechanical models on real biological composites. KW - Wood materials KW - Micro-comuted tomography (µCT) KW - Individual cell tracking KW - Stress-strain behaviour PY - 2020 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-518157 DO - https://doi.org/10.1038/S41598-020-78028-4 SN - 2045-2322 VL - 10 SP - 1 EP - 16 PB - Springer nature AN - OPUS4-51815 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Surov, A. A1 - Vasilev, N. A1 - Voronin, A. A1 - Churakov, A. A1 - Emmerling, Franziska A1 - Perlovich, G. T1 - Ciprofloxacin salts with benzoic acid derivatives: structural aspects, solid-state properties and solubility performance N2 - n this work, three new pharmaceutical hydrated salts of ciprofloxacin with selected derivatives of benzoic acid, namely 4-hydroxybenzoic acid, 4-aminobenzoic acid and gallic acid, were obtained and systematically investigated by several solid-state analytical techniques. In situ Raman spectroscopy was applied to elucidate the alternative pathways of the solid forms' formation under mechanochemical conditions. Crystal structure analysis and a CSD survey allowed us to establish a distinct supramolecular motif formed by infinite columnar stacks of ciprofloxacin dimers arranged in the “head-to-tail” manner. An alternative “head-to-head” packing arrangement was only observed in the crystal of the hydrated ciprofloxacin salt with 4-aminobenzoic acid. In addition, the pH-solubility behavior of the solid forms was thoroughly investigated. Furthermore, a distinct structure–property relationship between the specific features of the supramolecular organization of the hydrated salts and their solubility was observed and discussed. KW - Mechanochemistry KW - XRD PY - 2020 DO - https://doi.org/10.1039/D0CE00514B VL - 22 IS - 25 SP - 4238 EP - 4249 AN - OPUS4-51818 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Opitz, P. A1 - Asta, M. A1 - Fernandez-Martinez, A. A1 - Panthöfer, M. A1 - Kabelitz, Anke A1 - Emmerling, Franziska A1 - Mondeshki, M. A1 - Tremel, W. T1 - Monitoring a Mechanochemical Syntheses of Isostructural Luminescent Cocrystals of 9-Anthracenecarboxylic Acid with two Dipyridines Coformers N2 - Amorphous calcium carbonate (ACC) is an important precursor in the biomineralization of crystalline CaCO3. In nature, it serves as a storage material or as a permanent structural element, whose lifetime is regulated by an organic matrix. The relevance of ACC in materials science is primarily related to our understanding of CaCO3 crystallization pathways and CaCO3/(bio)polymer nanocomposites. ACC can be synthesized by liquid–liquid phase separation, and it is typically stabilized with macromolecules. We have prepared ACC by milling calcite in a planetary ball mill. Phosphate “impurities” were added in the form of monetite (CaHPO4) to substitute the carbonate anions, thereby stabilizing ACC by substitutional disorder. The phosphate anions do not simply replace the carbonate anions. They undergo shear-driven acid/base and condensation reactions, where stoichiometric (10%) phosphate contents are required for the amorphization to be complete. The phosphate anions generate a strained network that hinders ACC recrystallization kinetically. The amorphization reaction and the structure of BM-ACC were studied by quantitative Fourier transform infrared spectroscopy and solid state 31P, 13C, and 1H magic angle spinning nuclear magnetic resonance spectroscopy, which are highly sensitive to symmetry changes of the local environment. In the first—and fast—reaction step, the CO32– anions are protonated by the HPO42– groups. The formation of unprecedented hydrogen carbonate (HCO3–) and orthophosphate anions appears to be the driving force of the reaction, because the phosphate group has a higher Coulomb energy and the tetrahedral PO43– unit can fill space more efficiently. In a competing second—and slow—reaction step, pyrophosphate anions are formed in a condensation reaction. No pyrophosphates are formed at higher carbonate contents. High strain leads to such a large energy barrier that any reaction is suppressed. Our findings aid in the understanding of the mechanochemical amorphization of calcium carbonate and emphasize the effect of impurities for the stabilization of the amorphous phases in general. Our approach allowed the synthesis of new amorphous alkaline earth defect variants containing the unique HCO3– anion. Our approach outlines a general strategy to obtain new amorphous solids for a variety of carbonate/phosphate systems that offer promise as biomaterials for bone regeneration. KW - Crystallization KW - Mechanochemistry KW - PDF PY - 2020 DO - https://doi.org/10.1021/acs.cgd.0c00912 VL - 20 IS - 10 SP - 6831 EP - 6846 PB - American Chemical Society AN - OPUS4-51819 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - GEN A1 - Pauw, Brian Richard A1 - Szymoniak, Paulina T1 - Dataset and Jupyter worksheet interpreting the (results from) small- and wide-angle scattering data from a series of boehmite/epoxy nanocomposites. Accompanies the publication "Competition of nanoparticle-induced mobilization and immobilization effects on segmental dynamics of an epoxy-based nanocomposite" N2 - Dataset and Jupyter worksheet interpreting the (results from) small- and wide-angle scattering data from a series of boehmite/epoxy nanocomposites. Accompanies the publication "Competition of nanoparticle-induced mobilization and immobilization effects on segmental dynamics of an epoxy-based nanocomposite", by Paulina Szymoniak, Brian R. Pauw, Xintong Qu, and Andreas Schönhals. Datasets are in three-column ascii (processed and azimuthally averaged data) from a Xenocs NanoInXider SW instrument. Monte-Carlo analyses were performed using McSAS 1.3.1, other analyses are in the Python 3.7 worksheet. Graphics and result tables are output by the worksheet. KW - Small angle scattering KW - X-ray scattering KW - Nanocomposite KW - Polymer nanocomposite KW - Boehmite KW - Analysis KW - SAXS/WAXS PY - 2020 DO - https://doi.org/10.5281/zenodo.4321087 PB - Zenodo CY - Geneva AN - OPUS4-51829 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Pauw, Brian Richard T1 - The Dark Side of Science N2 - An overview of the dark side of science: what it is, how it occurs, and what you can do to understand it and fight for the light side. T2 - First training event of the ITN-Project GW4SHM CY - Online meeting DA - 23.11.2020 KW - Scientific rigor KW - Scientific misconduct KW - Data manipulation KW - Image manipulation PY - 2020 AN - OPUS4-51830 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Ahmadi, Samim A1 - Lecompagnon, Julien A1 - Hirsch, Philipp Daniel A1 - Burgholzer, P. A1 - Jung, P. A1 - Caire, G. A1 - Ziegler, Mathias T1 - Laser excited super resolution thermal imaging for nondestructive inspection of internal defects N2 - A photothermal super resolution technique is proposed for an improved inspection of internal defects. To evaluate the potential of the laser-based thermographic technique, an additively manufactured stainless steel specimen with closely spaced internal cavities is used. Four different experimental configurations in transmission, reflection, stepwise and continuous scanning are investigated. The applied image post-processing method is based on compressed sensing and makes use of the block sparsity from multiple measurement events. This concerted approach of experimental measurement strategy and numerical optimization enables the resolution of internal defects and outperforms conventional thermographic inspection techniques. KW - Super Resolution KW - Laser Thermography KW - Non Destructive Testing KW - Comressed Sensing KW - Inverse Problem KW - Thermography PY - 2020 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-519016 DO - https://doi.org/10.1038/s41598-020-77979-y VL - 10 IS - 1 SP - 22357 PB - Springer Nature AN - OPUS4-51901 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - GEN A1 - Dittmann, Daniel T1 - Experimental raw data for "Specific adsorption sites and conditions derived by thermal decomposition of activated carbons and adsorbed carbamazepine" N2 - This is the repository of all experimental raw data used in the Scientific Reports publication "Specific adsorption sites and conditions derived by thermal decomposition of activated carbons and adsorbed carbamazepine" by Daniel Dittmann, Paul Eisentraut, Caroline Goedecke, Yosri Wiesner, Martin Jekel, Aki Sebastian Ruhl, and Ulrike Braun. It includes - overview_measurements.xlsx and overview_measurements.ods containing a list of all TGA experiments (TGA, TGA-FTIR, TED-GC-MS, and ramp-kinetics) - TED-GC-MS.zip containing gas chromatography-mass spectrometry experimtent files for the Chemstation and OpenChrom - TGA.zip containing thermogravimetric analyses raw data on evolved gas analyses experiments (TGA-FTIR and TED-GC-MS) - TGA_kinetics.zip containing thermogravimetric analyses raw data on decomposition kinetic experiments (ramp-kinetics) - TGA-FTIR.zip containing Fourier-transform infrared spectroscopy series files for OMNIC - XRF.zip containing x-ray flourescence data on elemental composition KW - Adsorption KW - Aktivkohle KW - TED-GC/MS KW - Thermoanalytik PY - 2020 DO - https://doi.org/10.5281/zenodo.3716316 PB - Zenodo CY - Geneva AN - OPUS4-51902 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Waske, Anja T1 - X-ray Non-destructive testing of materials and composites N2 - Functional materials for energy conversion are important technology drivers needed for the implementation of low carbon energy. Therefore, researchers commonly focus on improving the intrinsic properties of a functional material. However, for applications, the extrinsic properties are at least as important as the intrinsic ones. Consequently, it is important to investigate and understand the external and internal structure of semi-finished products and especially defect dependent properties. The extrinsic properties may change during application and the life cycle of the material as well as through processing and molding steps. Our studies show how X-ray tomographic (XCT) investigations can contribute to structure investigations in composites and massive samples using the example of magnetic materials for energy conversion. T2 - Ruhr Universität Bochum - Seminar materials science and technology CY - Online meeting DA - 12.11.2020 KW - X-ray imaging KW - Non-destructuve testing KW - Functional materials PY - 2020 AN - OPUS4-51905 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Schumacher, David T1 - From W. C. Röntgen to modern Tomography N2 - A not complete review of X-Ray related milestones from 1895 to the 21st century. T2 - ITN GW4SHM, First Training Event CY - Online Meeting DA - 23.11.2020 KW - X-Ray KW - Computed Tomography KW - Laminography KW - Digital Detector Arrays KW - Wilhelm Conrad Röntgen PY - 2020 AN - OPUS4-51881 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - INPR A1 - Ahmadi, Samim A1 - Lecompagnon, Julien A1 - Hirsch, Philipp Daniel A1 - Burgholzer, P. A1 - Jung, P. A1 - Caire, G. T1 - Laser excited super resolution thermal imaging for nondestructive inspection of internal defects N2 - A photothermal super resolution technique is proposed for an improved inspection of internal defects. To evaluate the potential of the laser-based thermographic technique, an additively manufactured stainless steel specimen with closely spaced internal cavities is used. Four different experimental configurations in transmission, reflection, stepwise and continuous scanning are investigated. The applied image post-processing method is based on compressed sensing and makes use of the block sparsity from multiple measurement events. This concerted approach of experimental measurement strategy and numerical optimization enables the resolution of internal defects and outperforms conventional thermographic inspection techniques. KW - Super resolution KW - Photothermal KW - Imaging KW - Compressed sensing KW - Internal defects KW - Nondestructive testing PY - 2020 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-518866 DO - https://doi.org/10.48550/arXiv.2007.03341 SN - 2331-8422 SP - 1 EP - 9 PB - Cornell University CY - Ithaca, NY AN - OPUS4-51886 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Pelkner, Matthias T1 - Non-Destructive Testing - Electromagnetic Methods N2 - This presentation contains a short summary about the basics of eddy current testing and magnetic flux leakage testing. In addition, the main focus of the talk lies on the application of point-like sensors like GMR for NDT. T2 - 1st Training Event - ITN project GW4SHM CY - Online meeting DA - 23.11.2020 KW - GMR KW - Magnetic flux leakage testing KW - Eddy current testing PY - 2020 AN - OPUS4-51889 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - GEN A1 - Léonard, Fabien T1 - Overview of XCT data processing workflow for ammonium nitrate prills quantitative analysis N2 - This video presents the data processing workflow that was developed to perform the quantitative structural and morphological analysis of ammonium nitrate prills by x-ray computed tomography. KW - ANFO KW - Data processing KW - Explosives KW - Porosity KW - Surface area KW - XCT PY - 2020 DO - https://doi.org/10.5281/zenodo.3611339 PB - Zenodo CY - Geneva AN - OPUS4-51897 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Juds, Carmen A1 - Schmidt, J. A1 - Weller, Michael G. A1 - Lange, Thorid A1 - Beck, Uwe A1 - Conrad, T. A1 - Boerner, H. G. T1 - Combining phage display and next-generation sequencing for materials sciences: A case study on probing polypropylene surfaces N2 - Phage display biopanning with Illumina next-generation sequencing (NGS) is applied to reveal insights into peptide-based adhesion domains for polypropylene (PP). One biopanning round followed by NGS selects robust PP-binding peptides that are not evident by Sanger sequencing. NGS provides a significant statistical base that enables motif analysis, statistics on positional residue depletion/enrichment, and data analysis to suppress false-positive sequences from amplification bias. The selected sequences are employed as water-based primers for PP-metal adhesion to condition PP surfaces and increase adhesive strength by 100% relative to nonprimed PP. KW - Polymers KW - Polypropylene KW - Glue KW - Plastics KW - Surface Activation KW - Primer KW - Peptide Library KW - Epoxy KW - Solid-binding Peptides KW - Functionalization KW - Polymer-binding Peptides KW - Adhesion KW - Material-binding Peptides KW - Adhesives PY - 2020 DO - https://doi.org/10.1021/jacs.0c03482 SN - 0002-7863 SN - 1520-5126 VL - 142 IS - 24 SP - 10624 EP - 10628 PB - ACS CY - Washington, DC, USA AN - OPUS4-51123 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Paul, Martin A1 - Tscheuschner, Georg A1 - Herrmann, Stefan A1 - Weller, Michael G. T1 - Fast Detection of 2,4,6-Trinitrotoluene (TNT) at ppt Level by a Laser-Induced Immunofluorometric Biosensor N2 - The illegal use of explosives by terrorists and other criminals is an increasing issue in public spaces, such as airports, railway stations, highways, sports venues, theaters, and other large buildings. Security in these environments can be achieved by different means, including the installation of scanners and other analytical devices to detect ultra-small traces of explosives in a very short time-frame to be able to take action as early as possible to prevent the detonation of such devices. Unfortunately, an ideal explosive detection system still does not exist, which means that a compromise is needed in practice. Most detection devices lack the extreme analytical sensitivity, which is nevertheless necessary due to the low vapor pressure of nearly all explosives. In addition, the rate of false positives needs to be virtually zero, which is also very difficult to achieve. Here we present an immunosensor system based on kinetic competition, which is known to be very fast and may even overcome affinity limitation, which impairs the performance of many traditional competitive assays. This immunosensor consists of a monolithic glass column with a vast excess of immobilized hapten, which traps the fluorescently labeled antibody as long as no explosive is present. In the case of the explosive 2,4,6-trinitrotoluene (TNT), some binding sites of the antibody will be blocked, which leads to an immediate breakthrough of the labeled protein, detectable by highly sensitive laser-induced fluorescence with the help of a Peltier-cooled complementary metal-oxide-semiconductor (CMOS) camera. Liquid handling is performed with high-precision syringe pumps and chip-based mixing-devices and flow-cells. The system achieved limits of detection of 1 pM (1 ppt) of the fluorescent label and around 100 pM (20 ppt) of TNT. The total assay time is less than 8 min. A cross-reactivity test with 5000 pM solutions showed no signal by pentaerythritol tetranitrate (PETN), 1,3,5-trinitroperhydro-1,3,5-triazine (RDX), and octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX). This immunosensor belongs to the most sensitive and fastest detectors for TNT with no significant cross-reactivity by non-related compounds. The consumption of the labeled antibody is surprisingly low: 1 mg of the reagent would be sufficient for more than one year of continuous biosensor operation. KW - Airport KW - Aviation KW - Bombs KW - Terrorism KW - Biosensing KW - Continuous Sensor KW - High-Speed KW - Ultrasensitive PY - 2020 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-511245 DO - https://doi.org/10.3390/bios10080089 VL - 10 IS - 8 SP - 89 PB - MDPI CY - Basel AN - OPUS4-51124 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Grossegesse, M. A1 - Hartkopf, F. A1 - Nitsche, A. A1 - Schaade, L. A1 - Doellinger, J. A1 - Muth, Thilo T1 - Perspective on Proteomics for Virus Detection in Clinical Samples N2 - One of the most widely used methods to detect an acute viral infection in clinical specimens is diagnostic real-time polymerase chain reaction. However, because of the COVID-19 pandemic, mass-spectrometry-based proteomics is currently being discussed as a potential diagnostic method for viral infections. Because proteomics is not yet applied in routine virus diagnostics, here we discuss its potential to detect viral infections. Apart from theoretical considerations, the current status and technical limitations are considered. Finally, the challenges that have to be overcome to establish proteomics in routine virus diagnostics are highlighted. KW - COVID-19 KW - Mass spectrometry KW - Virus diagnostics KW - Virus detection KW - Targeted mass spectrometry KW - Proteomics PY - 2020 DO - https://doi.org/10.1021/acs.jproteome.0c00674 SN - 1535-3907 VL - 19 IS - 11 SP - 4380 EP - 4388 PB - ACS AN - OPUS4-51633 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Sajulga, R. A1 - Easterly, C. A1 - Riffle, M. A1 - Mesuere, B. A1 - Muth, Thilo A1 - Mehta, S. A1 - Kumar, P. A1 - Johnson, J. A1 - Gruening, B. A1 - Schiebenhoefer, H. A1 - Kolmeder, C. A1 - Fuchs, S. A1 - Nunn, B. A1 - Rudney, J. A1 - Griffin, T. A1 - Jagtap, P. T1 - Survey of metaproteomics software tools for functional microbiome analysis N2 - To gain a thorough appreciation of microbiome dynamics, researchers characterize the functional relevance of expressed microbial genes or proteins. This can be accomplished through metaproteomics, which characterizes the protein expression of microbiomes. Several software tools exist for analyzing microbiomes at the functional level by measuring their combined proteome-level response to environmental perturbations. In this survey, we explore the performance of six available tools, to enable researchers to make informed decisions regarding software choice based on their research goals. Tandem mass spectrometry-based proteomic data obtained from dental caries plaque samples grown with and without sucrose in paired biofilm reactors were used as representative data for this evaluation. Microbial peptides from one sample pair were identified by the X! tandem search algorithm via SearchGUI and subjected to functional analysis using software tools including eggNOG-mapper, MEGAN5, MetaGOmics, MetaProteomeAnalyzer (MPA), ProPHAnE, and Unipept to generate functional annotation through Gene Ontology (GO) terms. Among these software tools, notable differences in functional annotation were detected after comparing differentially expressed protein functional groups. Based on the generated GO terms of these tools we performed a peptide-level comparison to evaluate the quality of their functional annotations. A BLAST analysis against the NCBI non-redundant database revealed that the sensitivity and specificity of functional annotation varied between tools. For example, eggNOG-mapper mapped to the most number of GO terms, while Unipept generated more accurate GO terms. Based on our evaluation, metaproteomics researchers can choose the software according to their analytical needs and developers can use the resulting feedback to further optimize their algorithms. To make more of these tools accessible via scalable metaproteomics workflows, eggNOG-mapper and Unipept 4.0 were incorporated into the Galaxy platform. KW - Bioinformatics KW - Metaproteomics KW - Mass spectrometry PY - 2020 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-516358 DO - https://doi.org/10.1371/journal.pone.0241503 SP - e0241503 AN - OPUS4-51635 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER -