TY - JOUR A1 - Bayerlein, Bernd A1 - Hanke, T. A1 - Muth, Thilo A1 - Riedel, Jens A1 - Schilling, Markus A1 - Schweizer, C. A1 - Skrotzki, Birgit A1 - Todor, A. A1 - Moreno Torres, Benjami A1 - Unger, Jörg F. A1 - Völker, Christoph A1 - Olbricht, Jürgen T1 - A Perspective on Digital Knowledge Representation in Materials Science and Engineering N2 - The amount of data generated worldwide is constantly increasing. These data come from a wide variety of sources and systems, are processed differently, have a multitude of formats, and are stored in an untraceable and unstructured manner, predominantly in natural language in data silos. This problem can be equally applied to the heterogeneous research data from materials science and engineering. In this domain, ways and solutions are increasingly being generated to smartly link material data together with their contextual information in a uniform and well-structured manner on platforms, thus making them discoverable, retrievable, and reusable for research and industry. Ontologies play a key role in this context. They enable the sustainable representation of expert knowledge and the semantically structured filling of databases with computer-processable data triples. In this perspective article, we present the project initiative Materials-open-Laboratory (Mat-o-Lab) that aims to provide a collaborative environment for domain experts to digitize their research results and processes and make them fit for data-driven materials research and development. The overarching challenge is to generate connection points to further link data from other domains to harness the promised potential of big materials data and harvest new knowledge. KW - Data infrastructures KW - Digital representations KW - Digital workflows KW - Knowledge graphs KW - Materials informatics KW - Ontologies KW - Vocabulary providers PY - 2022 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-546729 DO - https://doi.org/10.1002/adem.202101176 SN - 1438-1656 SP - 1 EP - 14 PB - Wiley-VCH GmbH CY - Weinheim AN - OPUS4-54672 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Bayerlein, Bernd A1 - Schilling, Markus A1 - Birkholz, Henk A1 - Jung, Matthias A1 - Waitelonis, Jörg A1 - Mädler, Lutz A1 - Sack, Harald T1 - PMD Core Ontology: Achieving semantic interoperability in materials science N2 - Knowledge representation in the Materials Science and Engineering (MSE) domain is a vast and multi-faceted challenge: Overlap, ambiguity, and inconsistency in terminology are common. Invariant (consistent) and variant (context-specific) knowledge are difficult to align cross-domain. Generic top-level semantic terminology often is too abstract, while MSE domain terminology often is too specific. In this paper, an approach how to maintain a comprehensive MSE-centric terminology composing a mid-level ontology–the Platform MaterialDigital Core Ontology (PMDco)–via MSE community-based curation procedures is presented. The illustrated findings show how the PMDco bridges semantic gaps between high-level, MSE-specific, and other science domain semantics. Additionally, it demonstrates how the PMDco lowers development and integration thresholds. Moreover, the research highlights how to fuel it with real-world data sources ranging from manually conducted experiments and simulations with continuously automated industrial applications. KW - Ontology KW - Materials science and engineering KW - Knowledge representation KW - Reproducibility KW - Semantic interoperability KW - Semantic data integration PY - 2024 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-592948 DO - https://doi.org/10.1016/j.matdes.2023.112603 SN - 0264-1275 VL - 237 SP - 1 EP - 12 PB - Elsevier CY - Amsterdam AN - OPUS4-59294 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Bayerlein, Bernd A1 - Schilling, Markus A1 - Curran, Maurice A1 - Campbell, Carelyn E. A1 - Dima, Alden A. A1 - Birkholz, Henk A1 - Lau, June W. T1 - Natural Language Processing-Driven Microscopy Ontology Development N2 - AbstractThis manuscript describes the accelerated development of an ontology for microscopy in materials science and engineering, leveraging natural language processing (NLP) techniques. Drawing from a comprehensive corpus comprising over 14 k contributions to the Microscopy and Microanalysis conference series, we employed two neural network-based algorithms for NLP. The goal was to semiautomatically create the Microscopy Ontology (MO) that encapsulates and interconnects the terminology most frequently used by the community. The MO, characterized by its interlinked entities and relationships, is designed to enhance the quality of user query results within NexusLIMS. This enhancement is facilitated through the concurrent querying of related terms and the seamless integration of logical connections. KW - Microscopy Ontology KW - Knowledge Representation KW - Semantic Interoperability KW - Natural Language Processing KW - Ontology Development PY - 2024 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-616942 DO - https://doi.org/10.1007/s40192-024-00378-y SP - 1 EP - 12 PB - Springer Science and Business Media LLC AN - OPUS4-61694 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Bayerlein, Bernd A1 - Schilling, Markus A1 - von Hartrott, Philipp A1 - Waitelonis, Jörg T1 - Semantic integration of diverse data in materials science: Assessing Orowan strengthening N2 - AbstractThis study applies Semantic Web technologies to advance Materials Science and Engineering (MSE) through the integration of diverse datasets. Focusing on a 2000 series age-hardenable aluminum alloy, we correlate mechanical and microstructural properties derived from tensile tests and dark-field transmission electron microscopy across varied aging times. An expandable knowledge graph, constructed using the Tensile Test and Precipitate Geometry Ontologies aligned with the PMD Core Ontology, facilitates this integration. This approach adheres to FAIR principles and enables sophisticated analysis via SPARQL queries, revealing correlations consistent with the Orowan mechanism. The study highlights the potential of semantic data integration in MSE, offering a new approach for data-centric research and enhanced analytical capabilities. KW - Semantic Interoperability KW - Knowledge Graph KW - Orowan Mechanism KW - Aluminum Alloy Aging KW - Ontology KW - Semantic Data Integration PY - 2024 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-599780 DO - https://doi.org/10.1038/s41597-024-03169-4 VL - 11 IS - 1 SP - 1 EP - 12 PB - Springer Science and Business Media LLC AN - OPUS4-59978 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Bayerlein, Bernd A1 - Waitelonis, Jörg A1 - Birkholz, Henk A1 - Jung, Matthias A1 - Schilling, Markus A1 - v. Hartrott, Philipp A1 - Bruns, Marian A1 - Schaarschmidt, Jörg A1 - Beilke, Kristian A1 - Mutz, Marcel A1 - Nebel, Vincent A1 - Königer, Veit A1 - Beran, Lisa A1 - Kraus, Tobias A1 - Vyas, Akhilesh A1 - Vogt, Lars A1 - Blum, Moritz A1 - Ell, Basil A1 - Chen, Ya‐Fan A1 - Waurischk, Tina A1 - Thomas, Akhil A1 - Durmaz, Ali Riza A1 - Ben Hassine, Sahar A1 - Fresemann, Carina A1 - Dziwis, Gordian A1 - Beygi Nasrabadi, Hossein A1 - Hanke, Thomas A1 - Telong, Melissa A1 - Pirskawetz, Stephan A1 - Kamal, Mohamed A1 - Bjarsch, Thomas A1 - Pähler, Ursula A1 - Hofmann, Peter A1 - Leemhuis, Mena A1 - Özçep, Özgür L. A1 - Meyer, Lars‐Peter A1 - Skrotzki, Birgit A1 - Neugebauer, Jörg A1 - Wenzel, Wolfgang A1 - Sack, Harald A1 - Eberl, Chris A1 - Portella, Pedro Dolabella A1 - Hickel, Tilmann A1 - Mädler, Lutz A1 - Gumbsch, Peter T1 - Concepts for a Semantically Accessible Materials Data Space: Overview over Specific Implementations in Materials Science N2 - This article describes advancements in the ongoing digital transformation in materials science and engineering. It is driven by domain‐specific successes and the development of specialized digital data spaces. There is an evident and increasing need for standardization across various subdomains to support science data exchange across entities. The MaterialDigital Initiative, funded by the German Federal Ministry of Education and Research, takes on a key role in this context, fostering collaborative efforts to establish a unified materials data space. The implementation of digital workflows and Semantic Web technologies, such as ontologies and knowledge graphs, facilitates the semantic integration of heterogeneous data and tools at multiple scales. Central to this effort is the prototyping of a knowledge graph that employs application ontologies tailored to specific data domains, thereby enhancing semantic interoperability. The collaborative approach of the Initiative's community provides significant support infrastructure for understanding and implementing standardized data structures, enhancing the efficiency of data‐driven processes in materials development and discovery. Insights and methodologies developed via the MaterialDigital Initiative emphasize the transformative potential of ontology‐based approaches in materials science, paving the way toward simplified integration into a unified, consolidated data space of high value. KW - Semantic Interoperability KW - Data Spaces KW - Integration Workflows KW - MaterialDigital PY - 2024 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-622952 DO - https://doi.org/10.1002/adem.202401092 SN - 1527-2648 SP - 1 EP - 25 PB - Wiley-VCH CY - Weinheim AN - OPUS4-62295 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Chen, Yue A1 - Schilling, Markus A1 - von Hartrott, P. A1 - Beygi Nasrabadi, Hossein A1 - Skrotzki, Birgit A1 - Olbricht, Jürgen T1 - Ontopanel: A Tool for Domain Experts Facilitating Visual Ontology Development and Mapping for FAIR Data Sharing in Materials Testing N2 - In recent years, the design and development of materials are strongly interconnected with the development of digital technologies. In this respect, efficient data management is the building block of material digitization and, in the field of materials science and engineering (MSE), effective solutions for data standardization and sharing of different digital resources are needed. Therefore, ontologies are applied that represent a map of MSE concepts and relationships between them. Among different ontology development approaches, graphical editing based on standard conceptual modeling languages is increasingly used due to its intuitiveness and simplicity. This approach is also adopted by the Materials-open-Laboratory project (Mat-o-Lab), which aims to develop domain ontologies and method graphs in accordance with testing standards in the field of MSE. To suit the actual demands of domain experts in the project, Ontopanel was created as a plugin for the popular open-source graphical editor diagrams.net to enable graphical ontology editing. It includes a set of pipeline tools to foster ontology development in diagrams.net, comprising imports and reusage of ontologies, converting diagrams to Web Ontology Language (OWL), verifying diagrams using OWL rules, and mapping data. It reduces learning costs by eliminating the need for domain experts to switch between various tools. Brinell hardness testing is chosen in this study as a use case to demonstrate the utilization of Ontopanel. KW - Materials Testing KW - Ontology KW - Visual ontology development KW - Data mapping KW - FAIR PY - 2022 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-560339 DO - https://doi.org/10.1007/s40192-022-00279-y SP - 1 EP - 12 PB - Springer AN - OPUS4-56033 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - GEN A1 - Glauer, M. A1 - Schilling, Markus A1 - Stappel, M. T1 - A practical ontology development guide N2 - Knowledge representation is becoming increasingly important in view of the large amounts of data that are handled in the modern scientific landscape. Many of the domains that have most readily realised this problem and worked on potential solutions have been the domain of biochemistry. And although the developments sought here were not accompanied by philosophers, this process organically led to the development of formal and structured representations of certain domains. While the resulting structures were not the first formal ontologies, they are ones that are still in wide use to this day. These approaches have led to major advances in the organisation, structuring and communication of scientific results. Since then, a variety of other domains have tried to adapt a similar process and develop their own ontologies. However, the development of ontologies from the domain of biochemistry was the result of a years-long process that also involved a large number of errors and course corrections. One of the greatest challenges is also one of the greatest strengths of ontologies: Interoperability with other ontologies. To ensure this interoperability, ontologies must follow certain principles. In the field of biochemistry, the OBO Foundry has established itself, which offers functionalities for a rich network of ontologies from the domain, but at the same time also defines rules. The purpose of this document is to define a similar set of rules for open ontology development, but which addresses a broader domain and at the same time lowers the barrier of entry for new ontology developers. To this end, we will outline a workflow that can be used to build new ontologies more efficiently. This workflow is based not only on our own years of experience in ontology development, but also on the rules of external experts such as the OBO Foundry. KW - Ontology KW - Data integration KW - Ontologie KW - Data interoperability PY - 2024 UR - https://scientific-ontology-network.github.io/ UR - https://github.com/scientific-ontology-network/ontology-development-guide/releases/download/v0.1.0/ontology-guide.pdf SP - 1 EP - 27 PB - GitHub CY - San Francisco ET - Version 0.1 AN - OPUS4-61140 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Schilling, Markus T1 - Tensile Test: From Standard to PMD Application Ontology N2 - Data analysis methods play an important role in both the experimental and simulation-based digital description of materials but have so far been poorly structured. The platform Material Digital (PMD) should contribute to a standardized description of data processing methods in materials research. The goal is the quality assurance of the processes and the output data, the acquisition and definition of their accuracy as well as the interoperability between applications. Therefore, application ontologies are created to explicitly describe processes and test methods. In this presentation, the first efforts in creating a tensile test application ontology in accordance with the ISO standard 6892-1:2019-11 are shown. Especially, the path of ontology development to be pursued based on standards was focused. T2 - Onboarding Workshop der Plattform Material Digital (PMD) CY - Online meeting DA - 13.04.2021 KW - Ontology KW - Platform MaterialDigital KW - PMD KW - Tensile Test KW - Normung KW - Standardization PY - 2021 AN - OPUS4-52425 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Schilling, Markus T1 - Tensile Test Ontology used in Platform Material Digital (PMD) N2 - Data analysis methods play an important role in both the experimental and simulation-based digital description of materials but have so far been poorly structured. The platform Material Digital (PMD) is supposed to contribute to a standardized description of data processing methods in materials research. The goal is the quality assurance of the processes and the output data, the acquisition and definition of their accuracy as well as the interoperability between applications. Therefore, application ontologies are created to explicitly describe processes and test methods. In this presentation, the first efforts within the joint project PMD in creating a tensile test application ontology in accordance with the ISO standard 6892-1:2019-11 are shown. Especially, the path of ontology development to be pursued based on standards was focused. Furthermore, the presentation includes a live demonstration of queries possibly performed to query data that was uploaded in the PMD triple store. T2 - Online Workshop: An introduction to the semantic web and ontologies CY - Online meeting DA - 23.04.2021 KW - Ontology KW - Tensile Test KW - Platform Material Digital KW - PMD KW - Knowledge Graphs KW - Semantic Web PY - 2021 AN - OPUS4-52949 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - GEN A1 - Schilling, Markus T1 - Tensile Test Ontology (TTO) N2 - This is the stable version 2.0.1 of the PMD ontology module of the tensile test (Tensile Test Ontology - TTO) as developed on the basis of the 2019 standard ISO 6892-1: Metallic materials - Tensile Testing - Part 1: Method of test at room temperature. The TTO was developed in the frame of the PMD project. The TTO provides conceptualizations valid for the description of tensile test and corresponding data in accordance with the respective standard. By using TTO for storing tensile test data, all data will be well structured and based on a common vocabulary agreed on by an expert group (generation of FAIR data) which will lead to enhanced data interoperability. This comprises several data categories such as primary data, secondary data and metadata. Data will be human and machine readable. The usage of TTO facilitates data retrieval and downstream usage. Due to a close connection to the mid-level PMD core ontology (PMDco), the interoperability of tensile test data is enhanced and data querying in combination with other aspects and data within the broad field of material science and engineering (MSE) is facilitated. The TTO class structure forms a comprehensible and semantic layer for unified storage of data generated in a tensile test including the possibility to record data from analysis, re-evaluation and re-use. Furthermore, extensive metadata allows to assess data quality and reproduce experiments. Following the open world assumption, object properties are deliberately low restrictive and sparse. KW - Ontology KW - Tensile Test KW - Digitalization KW - Plattform MaterialDigital KW - Structured Data PY - 2023 UR - https://github.com/MarkusSchilling/application-ontologies/blob/479311832819af695a2c64fa8eb772f2da398061/tensile_test_ontology_TTO/pmd_tto.ttl UR - https://github.com/materialdigital/core-ontology/blob/59f5727b0437ceea5e3d9fcb8fcd0ac211e92cc3/pmd_tto.ttl PB - GitHub CY - San Francisco, CA, USA AN - OPUS4-57935 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER -