TY - CONF A1 - Dinter, Adelina-Elisa T1 - Examination of biological samples by means of single-cell ICP-ToF-MS N2 - Up to now, different analytical methods for single cell analysis exist focusing on key features such as size, shape, morphology and elemental composition. The combination of the latest ICP-MS techniques - ICP-ToF-MS - together with the latest developments in the field of sample delivery - micro droplet generator (MDG) – will allow a Deep insight into the composition and size of cells. Microbiologically influenced corrosion (MIC) is an oxidation of metals affected by the presence or activity (or both) of microorganisms e.g. Shewanella Putrefaciens in biofilms on the surface of the corroding material. As this can happen for example in the soil on iron pipes of water pipes, in oil tanks or on steel sheet piling, there is great interest in MIC research, not only from various industrial sectors, but also from the environmental aspect. T2 - SALSA - Make & Measure CY - Online Meeting DA - 15.10.2020 KW - SC-ICP-ToF-MS KW - Single cell analysis KW - MDG ICP-ToF-MS KW - Microdroplet generator PY - 2020 AN - OPUS4-52441 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Dinter, Adelina-Elisa T1 - Deciphering corrosion processes of MIC organisms - single cell-ICP-ToF-MS analysis of archaea on solid steels N2 - ICP-ToF (time of flight) MS enables the analysis of the multi-element fingerprint of single cells. The single cell ICP-ToF-MS is used in the presented poster for the analysis of archaea involved in microbiologically influenced corrosion (MIC) of steel. By means of sc-ICP-ToF-MS, the possible uptake of individual elements from the respective steel is investigated - the information obtained will be used in the future to elucidate underlying mechanisms and develop possible material protection concepts. The work combines modern methods of analytical sciences with materials. T2 - SALSA - Make & Measure 2021 CY - Online meeting DA - 16.09.2021 KW - Sc-ICP-ToF-MS KW - Single cell analysis KW - Microbiologically influenced corrosion KW - Archaea KW - Poster presentation PY - 2021 AN - OPUS4-53337 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Erdmann, Eileen T1 - A random mutagenesis approach to elucidate the biology of extremotolerant black fungi N2 - Microcolonial black fungi ubiquitously inhabit sun-exposed natural and man-made surfaces of our planet. To promote genetic studies, which are hindered by slow growth, lack of sexual cycles and transformation difficulties, CRISPR/Cas9-based genetic tools were implemented (Erdmann et al. 2022, Front Fungal Biol). Now efficient targeted mutagenesis of the rock inhabitant Knufia petricola (Eurotiomycetes/Chaetothyriales) - as a representative of the polyphyletic group of black fungi - enables the elucidation of extremotolerance, oligotrophism, unusual types of cell division, mineral weathering and symbiotic interactions. Still more progress on assigning functions to yet unknown genes can be expected if a forward genetics approach is available. We chose the two-component Activator/ Dissociation (Ac/Ds) transposon system from maize for generating a collection of insertional mutants by in-vivo mutagenesis of K. petricola. For the optimal use of this genetic tool, an inducible promoter for the expression of the Ac transposase (AcTPase) and by this the regulatable transposition of the resistance cassette-containing Ds transposon is desired. However, endogenous promoters for nitrate assimilation and galactose catabolism - often used in fungi for regulatable gene expression - are not inducible by their substrates in K. petricola suggesting that the regulatory networks for nutrient acquisition differ significantly in oligotrophic fungi. Therefore, the metabolism-independent Tet-on system was combined with the AcTPase coding sequence and subsequently transformed into Ds-carrying K. petricola strains. In total, four auxotrophic Ac|Ds starter strains containing the Ds transposon at different position of ade2 or ura3 were generated. The cultivation of these strains with doxycycline for induction of TET::Ac and subsequent selection of cells on ADE/URA-lacking media resulted in prototrophic colonies (revertants) for some but not all Ac|Ds strains. Currently, the transposition events in the obtained revertants are studied to validate the procedure. First amplicon sequencing of excision sites revealed footprint patterns, proving the transposon jumped. T2 - 16th European Conference on Fungal Genetics CY - Innsbruck, Austria DA - 05.03.2023 KW - Rock-inhabiting fungi KW - Foward genetics KW - In-vivo mutagenesis PY - 2023 AN - OPUS4-57144 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Erdmann, Eileen T1 - Tools for Knufia petricola: new techniques for CRISPR/Cas9-based genome editing N2 - Black microcolonial fungi represent a group of ascomycetes with similar adaptations for existing in natural and anthropogenically created extreme habitats. They exhibit slow yeast-like or meristematic growth, do not form specialized reproduction structures and accumulate the black pigment 1,8-dihydroxynaphthalene (DHN) in the multilayered cell walls. We chose the rock inhabitant Knufia petricola of the Chaetothyriales as a representative for developing methods for genetic manipulation, simulation of mineral weathering and study of symbiotic interactions. Here, we report on the expansion of the genetic toolkit by more efficient multiplex CRISPR/Cas9 using a plasmid-based system for expression of Cas9 and multiple sgRNAs and three additional resistance selection markers. The targeted integration of expression constructs by replacement of essential genes for pigment synthesis allows for an additional color screening of the transformants. The black-pink screening due to the elimination of pks1 (melanin) was applied for promoter studies using GFP fluorescence as reporter, while the black-white screening due to the concurrent elimination of pks1 (melanin) and phs1 (carotenoids) was used to identify transformants that contain the two expression constructs for co-localization or bimolecular fluorescence complementation (BiFC) studies. In addition, two intergenic regions (igr1, igr2) were identified in which expression constructs can be inserted without causing obvious phenotypes. Plasmids of the pNXR-XXX series (Schumacher, 2012) and new compatible entry plasmids were used for fast and easy generation of expression constructs and are suitable for use in other fungal systems as well. T2 - 31st Fungal Genetics Conference CY - USA, CA, Pacific Grove DA - 15.03.2022 KW - Microcolonial fungi KW - Genetic engineering KW - Fluorescent proteins PY - 2022 AN - OPUS4-54586 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Even, Morgane T1 - Development of a procedure for the analysis of the emissions of VVOCs N2 - Several aspects were explored towards the standardization of a suitable procedure. The use of gaseous standards is necessary and a standard gas mixture containing 60 substances was successfully generated and employed for further investigations. The suitability of different chromatography columns was addressed: The use of PLOT (Porous Layer Open Tubular) columns is well suitable for VVOC analysis. The recoveries of the 60 analytes on several adsorbents and their combinations were determined: A combination of a graphitized carbon black and a carbon molecular sieve showed great results for all analytes. Carbon molecular sieves adsorb water which can impair the analysis. Different options such as purging, the use of a drying system or splitting were investigated for water removal. This contribution will present experimental results supporting the standardization of a method for VVOC analysis. T2 - Indoor Air conference CY - Kuopio, Finland DA - 12.06.2022 KW - Analytical method KW - EN 16516 KW - ISO 16000-6 KW - VVOCs PY - 2022 AN - OPUS4-55282 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Even, Morgane T1 - Towards an efficient procedure for the analysis of VVOC emissions N2 - This poster summarizes the points that need to be addressed towards the standardization of an efficient procedure for the analysis of VVOC emissions: Standard mixture generation and investigations on mutual reactivity, selection of an appropriate sorbent combination, water management and choice of a suited GC column. T2 - Indoor Air 2020: The 16th conference of the international society of indoor air quality and climate CY - Online meeting DA - 01.11.2020 KW - VVOCs KW - Analytical method KW - ISO 16000-6 KW - EN 16516 PY - 2020 AN - OPUS4-52023 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Frelih, Milena T1 - Material-Microbiome Interactions N2 - Estimations show that the anthropogenic mass, the technosphere, already exceeds the biomass on Earth. Understanding the technosphere-environment interactions and their impacts is key to safe and healthy ecosystems and human societies. At BAM, we aim at promoting awareness for microorganisms living and evolving in contact with human-made materials and technical systems. We are creating datasets of biofilms on plastic and other anthropogenic materials and in the context of important technical challenges (e.g. microbially influenced corrosion or biocide-induced antimicrobial resistance). This enables us to identify and examine key organisms in the investigated systems that potentially harbor new, also industrially relevant, species and traits. Further, we explore material effects on aquatic microbial communities, aiming at the development and establishment of innovative and environmentally relevant methodologies. By using bioinformatic and molecular tools and interdisciplinary research, we enhance the understanding of material-microbiome interactions for a safe and sustainable future. T2 - NFDI4Microbiota Annual Conference CY - Cologne, Germany DA - 30.09.2025 KW - Microbiome KW - Microplastics KW - Black fungi KW - Nanoparticles PY - 2025 AN - OPUS4-64637 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Frelih, Milena T1 - Impact of Engineered Nanomaterials on Microbial Communities in the Aquatic Environment N2 - Engineered nanoparticles have garnered significant attention for their unique properties and potential applications across various industries. They were extensively examined for their toxicological effect in vitro and in vivo, but their effects on environmental and biological systems remain underexplored. A key area of concern is how nanoparticles interact with microbial communities in natural ecosystems, since these communities are vital for processes such as nutrient cycling, biodegradation, and maintaining ecosystem health and functioning. Currently, environmental risk assessments of nanoparticles majorly involve higher organisms (e.g. algae, zooplankton), but omit the effects on complex communities and ecosystems as a whole. This research aims to investigate the impact of nanomaterials on aquatic microbial communities using a combination of laboratory experiments and field-sampling along a gradient from low to highly anthropogenically impacted aquatic ecosystems around Berlin, Germany. To holistically assess changes in microbial composition and functional activity in response to nanomaterial exposure, we will apply molecular, microbiological, analytical as well as OMIC methods. We hypothesize that nanoparticles induce significant compositional changes in microbial community structures, potentially leading to alterations in stress responses and other functional effects. Nanomaterials have the potential to benefit the environment by contributing to energy and resource efficiency, remediation of contaminated sites, or water treatment. In order to represent truly sustainable products, though, a safe use for humans and ecosystems must be assured. Ultimately, this research will contribute to more accurate environmental risk assessments and help guide the responsible use of nanotechnology in various industries. T2 - SETAC Europe CY - Vienna, Austria DA - 11.05.2025 KW - Microbial Communities KW - Aquatic Environment KW - Nanomaterials PY - 2025 AN - OPUS4-63164 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Fuentes, Elsa A1 - Prieto, Beatriz A1 - Gorbushina, Anna T1 - Mixed model biofilm: interactions between algae, fungi and cyanobacteria and their effects on granite biodeterioration N2 - Granite, despite being one of the most widely used rocks for building material cultural heritage, is also one of the least studied. Previous works have shown that environmental parameters modulated by climate change will lead to changes in the microbial composition of biofilms grown on stone, but also to changes in the production of EPS, in the composition of pigments and, as a consequence, in the biodeterioration processes that this rock undergoes (Fuentes, 2023). Considering that the colonisation process is highly dynamic, small changes in climatic conditions can lead to the formation of different types of biofilms and diverse interactions between species. Knowing the contribution of the different organisms to the deterioration process is important both to anticipate the consequences that climate change will have on the deterioration of the granite, but also when addressing the processes of recolonization after cleaning, to ensure an improvement of the present situation. So, in order to continue my line of research on granite biodeterioration, the aim of this new project is to study the contribution of each type of organism (green algae, cyanobacteria and fungi) to the process of granite deterioration as well as the specific effect on each mineral, in addition to its role in the resilience and response of biofilms to environmental changes. With this main objective, the effect of the type of substrate on the composition of a model mixed biofilm formed by the fungus Knufia petricola, the algae Jaagichlorella sp. and the cyanobacterium Synechocystis sp. will be studied. The results obtained on granite will be compared with those obtained with other lithic types such as marble or limestone. Furthermore, it will be observed if the different ratios between organisms lead to changes in the capacity of these organisms to generate biodeterioration and to buffer climatic changes. Finally, the susceptibility of each mineral that makes up the granite - quartz, feldspars, micas - to biodeterioration mediated by each type of organism will be analysed. To address these questions, on the one hand, the response of the mixed biofilms as a whole will be evaluated by means of confocal microscopy, PAM, as well as the quantification of pigments and EPS, and on the other hand, the effect of these organisms on the deterioration of the substrates, through the use of SEM and TEM, which will allow the assessment of both the changes in porosity and the appearance of deterioration in the surface layers of the rock. This research will deepen the knowledge of the processes of granite deterioration, which have been limitedly studied in relation to microorganisms; but also aims to provide the scientific community with a model mixed biofilm to increase the reproducibility between experiments, one of the main limitations of this field of study. T2 - 19th International Biodeterioration and Biodegradation Symposium CY - Berlin, Germany DA - 09.09.2024 KW - Biofilm KW - Stone KW - Algae KW - Fungi KW - Cyanobacteria KW - Cultural heritage PY - 2024 AN - OPUS4-62272 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Gehrenkemper, Lennart T1 - Organically bound fluorine in river water - A methode comparison of CIC and HR-CS-GFMAS N2 - Abstract: Since it is unknown for many applications, which PFASs are used and how they enter the environment, target analysis-based methods reach their limits. The two most frequently used sum parameters are the adsorbable organically bound fluorine (AOF) and the extractable organically bound fluorine (EOF). Both can be quantified using either combustion ion chromatography (CIC) or high resolution-continuum source-graphite furnace molecular absorption spectrometry (HR-CS-GFMAS). Here we provide an insight on the advantageous and disadvantageous of both sum parameters and both detection methods. Our study is based on the analysis of surface water samples. Next to total fluorine (TF) analysis, AOF and EOF were determined as well as CIC and HR-CS-GFMAS are compared and results are comparatively discussed. Fluorine mass balancing revealed that, the AOF/TF proportion was higher than the EOF/TF proportion. The AOF made up 0.14–0.81% of TF and the EOF 0.04–0.28% of TF. Although, organically bound fluorine represents only a small portion of TF, PFASs are of worldwide concern, because of their extreme persistence and their bioaccumulation potential. The EOF-HR-CS-GFMAS method turned out to be more precise and sensitive than the AOF-CIC method and is a promising tool for future monitoring studies/routine analysis of PFASs in the environment. T2 - SALSA Make and Measure 2020: Advanced Characterization of Materials CY - Online meeting DA - 15.10.2020 KW - High resolution-continuum source-graphite furnace molecular absorption spectrometry (HR-CS-GFMAS) KW - Combustion ion chromatography (CIC) KW - Per- and polyfluorinated alkyl substances (PFASs) KW - Adsorbable organically bound fluorine (AOF) KW - Extractable organically bound fluorine (EOF) KW - Surfacewaters PY - 2020 AN - OPUS4-52451 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER -