TY - JOUR A1 - Schneider, Beate A1 - Pfeiffer, F. A1 - Dyall-Smith, M. A1 - Kunte, Hans-Jörg T1 - Genome Sequence of Micromonospora aurantiaca Strain G9, a Member of a Bacterial Consortium Capable of Polyethylene Degradation N2 - Nine different bacterial isolates were recovered from landfills. Each isolate was obtained in pure culture. As a consortium, the bacteria degrade polyethylene. The complete genome sequence of strain G9 was determined by PacBio sequencing. Using the TYGS server for taxonomic classification, strain G9 was assigned to the species Micromonospora aurantiaca. KW - Polyethylene KW - Micromonospora aurantiaca KW - Degradation KW - iChip PY - 2022 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-547181 DO - https://doi.org/10.1128/mra.01148-21 SN - 2576-098X VL - 11 IS - 5 SP - 1 EP - 2 PB - American Society for Microbiology CY - Washington, DC AN - OPUS4-54718 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Plarre, Rüdiger A1 - Cabral, U. A1 - Querner, P. ED - Ryder, S. ED - Crossman, A. T1 - Screening of two plant-derived extracts from Sri Lanka for their potential to control the subterranean termite Coptotermes formosanus N2 - The tropical environment of Sri Lanka accelerates bio-deterioration of cultural objects. Termites are one of the most damaging insect pests destroying the cellulose components of historical artifacts. Herbal extracts obtained from resin of Vateria copallifera (Retzius) Alston and seeds of Madhuca longifolia (Konig) Macbride have been used for centuries to preserve e.g. palm leaf manuscripts from insect attack. Herbal extractions of these traditional products for palm leaf manuscript were tested for their effect against the termite species Coptotermes formosanus Shiraki, 1909. Natural and artificial aged herbal extractions were tested to obtain a repellent index. Resin oil of V. copallifera caused slightly higher repellencies than M. longifolia. Artificially aged samples produced lower repellencies than naturally aged samples. The results indicate that the active ingredients are volatile. The potential for barrier treatment was tested only with V. copallifera. Tunnelling-behavior of C. formosanus workers through sand in the presence of V. copallifera resin oil was largely reduced. T2 - Pest Odyssey The Next Generation CY - Online meeting DA - 20.09.2021 KW - IPM in museums KW - Termite control KW - Essential oils KW - Library pests PY - 2022 SN - 978-1-909492-83-7 SP - 56 EP - 62 PB - Archetyp Publication LTD CY - London AN - OPUS4-54736 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Koerdt, Andrea T1 - COST-Action - EURO-MIC (CA20130) European MIC Network - New paths for science, sustainability and standards N2 - Microbiologically Influenced Corrosion (MIC) is a phenomenon that is increasingly becoming a problem for the society. MIC describes the negative effects a material can experience due to the presence of microorganisms. In Europe, several research groups/ other industrial stakeholders are already dealing with MIC. Unfortunately, the discussions are fragmented and the exchange of information is limited. A true transdisciplinary approach is hardly ever experienced, although this would be logical for this material/biology related challenge. USA, Canada and Australia have strong networks, and develop methods, prevention measures and standards, which Europe is forced to use, since nothing similar exists for a network and combined knowledge to design them according to european standards. This makes Europe extremely dependent and, in some cases, the potential measures or standards cannot been used because the suggested solutions are prohibited by European laws (e.g. use of biocides). Therefore, it is important to initiate a new European MIC-network. Europe needs to combine the efforts as experts in different fields and develop prevention measures according to the European rules, in close cooperation with industry and plant operators and owners of critical infrastructure. This COST Action will provide the necessary interaction and communication, knowledge sharing, training of personnel and of researchers of different disciplines. This will bring Europe to a leading role in this process, bringing ideas on an equal level with other nations, considering the values which are important for Europe and attitudes (e.g.environmental protection) and representing greater protection for people, property and the environment. The main aim and objective of the Action is to , in the context of MIC-research/control, encourage a fluent/synergistic collaboration/communication, closing the gap between materials scientists, engineers, microbiologists, chemists and integrity managers to encourage sufficient interaction between academia and industry. This Action will create a common MIC-Network, including the important stakeholders. T2 - EuroCorr CY - Online meeting DA - 19.09.2021 KW - COST Action KW - MIC KW - Interdisciplinary KW - Stakeholder KW - Academia PY - 2021 AN - OPUS4-53382 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Schwabe, M. A1 - Griep, S. A1 - Schmidtberg, H. A1 - Plarre, Rüdiger A1 - Goesmann, A. A1 - Vilcinskas, A. A1 - Vogel, H. A1 - Brinkrolf, K. T1 - Next-Generation Sequencing Analysis of the Tineola bisselliella Larval Gut Transcriptome Reveals Candidate Enzymes for Keratin Digestion N2 - The clothes moth Tineola bisselliella is one of a few insects that can digest keratin, leading to the destruction of clothing, textiles and artwork. The mechanism of keratin digestion is not yet fully understood, partly reflecting the lack of publicly available genomic and transcriptomic data. Here we present a high-quality gut transcriptome of T. bisselliella generated from larvae reared on keratin-rich and keratin-free diets. The overall transcriptome consists of 428,221 contigs that were functionally annotated and screened for candidate enzymes involved in keratin utilization. As a mechanism for keratin digestion, we identified cysteine synthases, cystathionine β-synthases and cystathionine γ-lyases. These enzymes release hydrogen sulfite, which may reduce the disulfide bonds in keratin. The dataset also included 27 differentially expressed contigs with trypsin domains, among which 20 were associated with keratin feeding. Finally, we identified seven collagenases that were upregulated on the keratin-rich diet. In addition to this enzymatic repertoire potentially involved in breaking down keratin, our analysis of poly(A)-enriched and poly(A)-depleted transcripts suggested that T. bisselliella larvae possess an unstable intestinal microbiome that may nevertheless contribute to keratin digestion KW - Insect biotechnology KW - Gene expression KW - RNA-Sequencing KW - Transcriptomics KW - Tineola bisselliella KW - Keratin PY - 2021 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-529902 DO - https://doi.org/10.3390/genes12081113 VL - 12 IS - 8 SP - 1113 PB - MDPI AN - OPUS4-52990 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Dinter, Adelina-Elisa A1 - An-Stepec, Biwen A1 - Wurzler, Nina A1 - Özcan Sandikcioglu, Özlem A1 - Koerdt, Andrea A1 - Meermann, Björn T1 - Deciphering corrosion processes of MIC organisms - single cell-ICP-ToF-MS analysis of archaea on solid steels N2 - ICP-ToF (time of flight) MS enables the analysis of the multi-element fingerprint of single cells. The single cell ICP-ToF-MS is used in the presented poster for the analysis of archaea involved in microbiologically influenced corrosion (MIC) of steel. By means of sc-ICP-ToF-MS, the possible uptake of individual elements from the respective steel is investigated - the information obtained will be used in the future to elucidate underlying mechanisms and develop possible material protection concepts. The work combines modern methods of analytical sciences with materials. T2 - SALSA - Make & Measure 2021 CY - Online meeting DA - 16.09.2021 KW - Sc-ICP-ToF-MS KW - Single cell analysis KW - Microbiologically influenced corrosion KW - Archaea KW - Poster presentation PY - 2021 AN - OPUS4-53337 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Dinter, Adelina-Elisa A1 - An-Stepec, Biwen A1 - Wurzler, Nina A1 - Koerdt, Andrea A1 - Meermann, Björn T1 - Development of a single cell-ICP-ToF-MS-method for multielement analysis of MIC organisms grown on solid steel samples N2 - The latest ICP-MS technology - ICP-ToF (time of flight)-MS – enables the analysis of the multi-element fingerprint of individual cells. The interface between material and environmental analysis thus receives special attention, e.g., when considering corrosion processes. Microbiologically influenced corrosion (MIC) is a highly unpredictable phenomenon due to the influence of the environment, microbial communities involved and the respective electron source. However, the interaction pathway between cells and the metal surface remains unclear. The development of the MIC-specific ICP-ToF-MS analytical method presented here at the single cell level, in combination with the investigation of steel-MIC interactions, contributes significantly to progress in instrumental MIC analysis and will enable clarification of the processes taking place. For this, a MIC-specific staining procedure was developed. It allows the analysis of archaea at a single cell level and provides information about the interaction of the cells with the staining agent which is extremely scarce compared to other well characterized organisms. Additionally, the single cell ICP-ToF-MS is used for the analysis of archaea involved in MIC of steel. Hence, the possible uptake of individual elements from different steel samples is investigated - the information obtained will be used in the future to elucidate underlying mechanisms and develop possible material protection concepts, thus combining modern methods of analytical sciences with materials. T2 - DAAS Doktorandenseminar 2021 CY - Online meeting DA - 20.09.2021 KW - Sc-ICP-ToF-MS KW - Single cell analysis KW - Microbiologically influenced corrosion KW - Archaea PY - 2021 AN - OPUS4-53340 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Wittmar, J. A1 - Ohle, Corina A1 - Kunte, Hans-Jörg A1 - Brand, I. T1 - Effect of Ectoine on the Conformation and Hybridization of dsDNA in Monolayer Films: A Spectroelectrochemical Study N2 - Lack of long-time stability of dsDNA-based supramolecular assemblies is an important issue that hinders their applications. In this work, 20 base pairs long dsDNA fragments [(dCdG)20 65%] composed of 65% dCdG and 35% dAdT nucleotides were tethered via a thiol to the surface of a gold electrode. The selfassembled (dCdG)20 -65% monolayer was immersed in solutions containing ectoine, a compatible solute. Electrochemical results showed that these monolayers were stable for one month. In situ IR spectroscopy indicated that ectoine interacts weakly with the phosphate-ribose backbone, dehydrating the phosphate groups and stabilizing the A-DNA conformation. This structural reorganization led to a reorientation of nucleic acid base pairs and a local disruption of the double-helix structure. However, the conformation and orientation of the dsDNA fragment was stable in the KW - Ectoine KW - dsDAN monolayer KW - A-DNA conformation PY - 2021 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-533346 DO - https://doi.org/10.1002/celc.202100816 SN - 2196-0216 VL - 8 IS - 20 SP - 3844 EP - 3854 PB - Wiley-VCH GmbH AN - OPUS4-53334 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - RPRT A1 - Taghavi Kalajahi, Sara A1 - Misra, Archismita A1 - Koerdt, Andrea T1 - Nanotechnology to mitigate microbiologically influenced corrosion (MIC) N2 - Microbiologically influenced corrosion (MIC) is a crucial issue for industry and infrastructure. Biofilms are known to form on different kinds of surfaces such as metal, concrete, and medical equipment. However, in some cases the effect of microorganisms on the material can be negative for the consistency and integrity of the material. Thus, to overcome the issues raised by MIC on a system, different physical, chemical, and biological strategies have been considered; all having their own advantages, limitations, and sometimes even unwanted disadvantages. Among all the methods, biocide treatments and antifouling coatings are more common for controlling MIC, though they face some challenges. They lack specificity for MIC microorganisms, leading to cross-resistance and requiring higher concentrations. Moreover, they pose environmental risks and harm non-target organisms. Hence, the demand for eco-friendly, long-term solutions is increasing as regulations tighten. Recently, attentions have been directed to the application of nanomaterials to mitigate or control MIC due to their significant antimicrobial efficiency and their potential for lower environmental risk compared to the conventional biocides or coatings. Use of nanomaterials to inhibit MIC is very new and there is a lack of literature review on this topic. To address this issue, we present a review of the nanomaterials examined as a biocide or in a form of a coating on a surface to mitigate MIC. This review will help consolidate the existing knowledge and research on the use of nanomaterials for MIC mitigation. It will further contribute to a better understanding of the potential applications and challenges associated with using nanomaterials for MIC prevention and control. KW - Microbiologically influenced corrosion (MIC) KW - Biofilm KW - Biofouling KW - Nanobiocide KW - Nanocoating PY - 2024 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-599335 DO - https://doi.org/10.3389/fnano.2024.1340352 VL - 6 SP - 1 EP - 25 AN - OPUS4-59933 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Knisz, J. A1 - Eckert, R. A1 - Gieg, L. A1 - Koerdt, Andrea A1 - Lee, J. A1 - Silva, E. A1 - Skovhus, T. L. A1 - An-Stepec, B. A. A1 - Wade, S. A. T1 - Microbiologically Influenced Corrosion - More than just Microorganisms N2 - Microbiologically influenced corrosion (MIC) is a phenomenon of increasing concern which affects various materials and sectors of society. MIC describes the effects, often negative, that a material can experience due to the presence of microorganisms. Unfortunately, although several research groups and industrial actors worldwide have already addressed MIC, discussions are fragmented, while information sharing and willingness to reach out to other disciplines is limited. A truly interdisciplinary approach, that would be logical for this material/biology/chemistry-related challenge, is rarely taken. In this review we highlight critical non-biological aspects of MIC that can sometimes be overlooked by microbiologists working on MIC but are highly relevant for an overall understanding of this phenomenon. Here, we identify gaps, methods and approaches to help solve MIC related challenges, with an emphasis on the MIC of metals. We also discuss the application of existing tools and approaches for managing MIC and propose ideas to promote an improved understanding of MIC. Furthermore, we highlight areas where the insights and expertise of microbiologists are needed to help progress this field. KW - MIC KW - Biodeterioration KW - Biocorrosion KW - Interdisciplinarity KW - Multiple lines of evidence PY - 2023 DO - https://doi.org/10.1093/femsre/fuad041 SN - 0168-6445 VL - 47 IS - 5 SP - 1 EP - 70 PB - FEMS Microbiology Reviews AN - OPUS4-58066 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Keshmiri, Hamid A1 - Cikes, Domagoj A1 - Samalova, Marketa A1 - Schindler, Lukas A1 - Appel, Lisa-Marie A1 - Urbanek, Michal A1 - Yudushkin, Ivan A1 - Slade, Dea A1 - Weninger, Wolfgang J. A1 - Peaucelle, Alexis A1 - Penninger, Josef A1 - Elsayad, Kareem T1 - Brillouin light scattering anisotropy microscopy for imaging the viscoelastic anisotropy in living cells N2 - Maintaining and modulating mechanical anisotropy is essential for biological processes. However, how this is achieved at the microscopic scale in living soft matter is not always clear. Although Brillouin light scattering (BLS) spectroscopy can probe the mechanical properties of materials, spatiotemporal mapping of mechanical anisotropies in living matter with BLS microscopy has been complicated by the need for sequential measurements with tilted excitation and detection angles. Here we introduce Brillouin light scattering anisotropy microscopy (BLAM) for mapping high-frequency viscoelastic anisotropy inside living cells. BLAM employs a radial virtually imaged phased array that enables the collection of angle-resolved dispersion in a single shot, thus enabling us to probe phonon modes in living matter along different directions simultaneously. We demonstrate a precision of 10 MHz in the determination of the Brillouin frequency shift, at a spatial resolution of 2 µm. Following proof-of-principle experiments on muscle myofibres, we apply BLAM to the study of two fundamental biological processes. In plant cell walls, we observe a switch from anisotropic to isotropic wall properties that may lead to asymmetric growth. In mammalian cell nuclei, we uncover a spatiotemporally oscillating elastic anisotropy correlated to chromatin condensation. Our results highlight the role that high-frequency mechanics can play in the regulation of diverse fundamental processes in biological systems. We expect BLAM to find diverse applications in biomedical imaging and material characterization. KW - Optical and Magnetic Materials KW - Atomic and Molecular Physics and Optics KW - Electronic PY - 2024 DO - https://doi.org/10.1038/s41566-023-01368-w SN - 1749-4885 SP - 1 EP - 13 PB - Springer Science and Business Media LLC AN - OPUS4-59512 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER -