TY - JOUR A1 - Stohl, Leonie A1 - Tonon, Chiara A1 - Cook, Jake A1 - Gorbushina, Anna A1 - Dehn, Frank A1 - von Werder, Julia T1 - Understanding bioreceptivity of concrete: realistic and accelerated weathering experiments with model subaerial biofilms N2 - Vertical greening systems are a promising solution to the increasing demand for urban green spaces, improving environmental quality and addressing biodiversity loss. This study facilitates the development microbially greened algal biofilm facades, which offer a low maintenance vertical green space. The study focuses on concrete as a widely used building material and explores how physical surface characteristics impact its bioreceptive properties. Concrete samples, produced from the same mix but differing in surface structure, were subjected to a laboratory weathering experiment to assess their bioreceptivity. A novel inoculation method was employed, involving a single initial inoculation with either alga ( Jaagichlorella sp.) alone, or a model biofilm consisting of a combination of the alga ( Jaagichlorella sp.) with a fungus ( Knufia petricola). The samples underwent four months of weathering in a dynamic laboratory setup irrigated with deionized water to observe subaerial biofilm attachment and growth. The formation of subaerial biofilms was monitored with high resolution surface imaging, colorimetric measurements and Imaging Pulse Amplitude Modulated Fluorometry (Imaging PAM-F), with Imaging PAM-F proving the most effective. Statistical analysis revealed that by impacting surface pH value and water retention capability, surface structures significantly influence microbial growth and that the concrete’s bioreceptivity can be influenced through thoughtful design of the materials surface. The inoculation of algae combined with a fungus facilitated the formation of a stable subaerial biofilm, enabling algae to colonize a surface structure that it could not colonize alone. This finding highlights the importance of modelling synergistic interactions present in natural biofilms. KW - Bioreceptivity KW - Concrete KW - Biofilm PY - 2025 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-653105 DO - https://doi.org/10.1617/s11527-025-02864-x SN - 1359-5997 VL - 59 IS - 2 SP - 1 EP - 18 PB - Springer Science and Business Media LLC AN - OPUS4-65310 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Walsh, Michael A1 - Schenk, Gerhard A1 - Robinson, Nicole A1 - John, Samuel A1 - Dayananda, Buddhi A1 - Krishnan, Vithya A1 - Adam, Christian A1 - Hermann, Ludwig A1 - Schmidt, Susanne T1 - The Circular Phosphorus Economy: Agronomic Performance of Recycled Fertilizers and Target Crops N2 - ABSTRACTBackgroundThe circular phosphorus (P) economy addresses economic and environmental penalties inherent to the current linear P economy. Phosphorus sources recovered from waste steams (recyclates) offer an alternative to conventional fertilizers.AimThis research aimed to assess the agronomic performance of P recyclates derived from wastewater (hazenite, struvite), treated sewage sludge ash (SSA) and compost (FOGO food organics/garden organics) with crops previously characterized for P use efficiency (PUE).MethodsPhosphorus was supplied as granules and benchmarked against conventional fertilizers or mineral solution. Grown in controlled conditions, crops received recyclates individually or as amalgamates, with or without additional water‐soluble P. We quantified P uptake, yield and phytate content, and calculated agronomic performance indicators.ResultsResults revealed that (1) crop genotypes with purportedly lower or higher PUE showed similar performance when grown with limiting P supply and/or less soluble P recyclates, (2) crop performance improved when less soluble P recyclates were combined with water‐soluble P, (3) crops produced similar yield and biomass when supplied with an organo‐mineral formulation, hazenite, or conventional fertilizer, (4) grain accumulated higher levels of the antinutrient phytate with excess soluble P.ConclusionWe conclude that suitably formulated P recyclates can supplement or replace conventional fertilizers, and that fertilizer design should consider the solubility of recyclates and a crop's ability to access less soluble P. This adds to the growing body of evidence that well‐formulated next‐generation fertilizers can efficiently nourish crops. Integrating insights from controlled experiments and field trials is a cost‐effective strategy to actualize the circular P economy. KW - Recycling fertilizer KW - Phosphate recovery KW - Sewage sludge ash KW - Struvite KW - Hazenite PY - 2025 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-627116 DO - https://doi.org/10.1002/jpln.202400299 SP - 1 EP - 14 PB - Wiley AN - OPUS4-62711 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Leers, K. A1 - Arnold, U. A1 - Herzel, Hannes A1 - Adam, Christian A1 - Burkhardt, J. T1 - Thermochemically Treated Sewage Sludge Ash From Pilot-Scale Production as P-Fertilizer for Spring Wheat and Maize in Different Soil Conditions N2 - Background P-fertilizers made from sewage sludge ash (SSA) may be suitable substitutes for rock phosphate (RP)-based fertilizers and contribute to sustainable use of waste. In this context, the thermochemical AshDec treatment of SSA (TC-SSA) has been continuously improved and has emerged as a possible method to produce plant-available and low-pollutant P-fertilizers. Aim Evaluation of the P-fertilizer efficacy of TC-SSA produced in pilot trials in vegetation experiments with different plants, soils, and fertilizer doses. Methods TC-SSA was tested in pot experiments for spring wheat and maize on different soils and at two doses (0.2 and 0.4 g fertilizer P pot−1) and is compared to untreated SSA (USSA), RP, Struvite, triple superphosphate (TSP), and a control without P-fertilization (Zero P). Pot experiments are complemented by an analysis of fertilizer P-solubility. Results P-solubility of SSA with different extraction methods increased due to the thermochemical treatment, whereas the water-insoluble property remained. In contrast to RP or USSA, TC-SSA enriched calcium–acetate–lactate extractable soil P to the same extent as TSP. Plant biomass and P-uptake increased with TC-SSA compared to Zero P, RP, and USSA and were in most cases equal to TSP fertilization under different soil conditions. In contrast, the effects of RP and USSA varied among soils but, mostly, did not exceed plant biomass and P-uptake of the unfertilized control. Conclusion TC-SSA has an increased fertilizer efficacy compared to USSA and is an effective P-fertilizer for spring wheat and maize in different soil conditions. KW - Phosphorus KW - Fertilizer KW - Thermochemical KW - Maize PY - 2025 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-648251 DO - https://doi.org/10.1002/jpln.70035 SN - 1522-2624 VL - 189 IS - 1 SP - 81 EP - 93 PB - Wiley-VCH AN - OPUS4-64825 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Meiers, Emelie A1 - Scholl, Juliane A1 - Droas, Morten A1 - Vogel, Christian A1 - Leube, Peter A1 - Sommerfeld, Thomas A1 - Bagheri, A. A1 - Adam, Christian A1 - Seubert, A. A1 - Koch, Matthias T1 - Development and evaluation of analytical strategies for the monitoring of per- and polyfluoroalkyl substances from lithium-ion battery recycling materials N2 - Per- and polyfluoroalkyl substances (PFAS) are well-known as “forever chemicals” and persistent pollutants released by different anthropogenic sources. The potential release of PFAS from accumulating electronic waste and lithium-ion battery (LIB) recycling activities has gained increasing attention in the past years. This creates a need for analytical methods tailored for the determination of PFAS out of environmental matrices related to the named activities or directly out of the concerned materials. In this work, analytical strategies for the monitoring of PFAS in LIB recycling materials were explored for a group of legacy perfluoro sulfonic- and carbonic acids (PFSA and PFCA) and of fluorinated sulfonylimides suspected to be LIB electrolyte ingredients. These analytical strategies comprehend PFAS target approaches with a herein optimized liquid chromatography tandem mass spectrometry (LC–MS/MS) method equipped with a HILIC (hydrophilic interaction liquid chromatography) column in combination with the TOP (total oxidizable precursor) assay and an adapted sample preparation method for high-matrix LIB recycling materials. The validated target method was applied to a set of LIB recycling materials: end-of-life batteries, black masses from hydrometallurgical recycling, and gas absorption solutions from thermal treatment of black masses as part of the recycling procedure. Investigation results show that the LIB industry can be connected to the release of both “LIB”-PFAS, such as the target sulfonylimides, and “already-legacy” PFAS, like the PFSA and PFCA. Especially, the presence of trifluoroacetic acid (TFA) as an emerging pollutant in every investigated LIB material type underlines the threat of PFAS emissions from LIB waste and recycling activities. KW - Per- and polyfluoroalkyl substances (PFAS) KW - Battery PY - 2025 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-647015 DO - https://doi.org/10.1007/s00216-025-06165-8 SN - 1618-2642 VL - 417 SP - 6567 EP - 6583 PB - Springer Science and Business Media LLC AN - OPUS4-64701 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Shafiey, H. A1 - Gogol-Döring, A. A1 - McMahon, Dino Peter A1 - Doublet, V. A1 - Disayathanoowat, T. A1 - Paxton, R. J. T1 - A new variant of slow bee paralysis virus revealed by transcriptome analysis N2 - Using NGS data from an RNA-seq library, we reveal a novel variant of slow bee paralysis virus (SBPV) in a pooled sample of adult honey bees (Apis mellifera) collected in southwest Germany. We provide its sequence (NCBI Accession No. PP100271) and demonstrate that it is infective for adult honey bees by feeding. KW - SBPV KW - Apis mellifera KW - +ss RNA virus KW - Iflaviridae KW - Transmission PY - 2025 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-645577 DO - https://doi.org/10.1080/00218839.2024.2425912 VL - 64 IS - 1 SP - 56 EP - 59 PB - Taylor & Francis AN - OPUS4-64557 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Kupke, Johannes A1 - Brombach, Julian A1 - Fang, Yuwen A1 - Wolf, Silver A. A1 - Thrukonda, Lakshmipriya A1 - Ghazisaeedi, Fereshteh A1 - Kuropka, Benno A1 - Hanke, Dennis A1 - Semmler, Torsten A1 - Nordholt, Niclas A1 - Schreiber, Frank A1 - Tedin, Karsten A1 - Lübke-Becker, Antina A1 - Steiner, Ulrich K. A1 - Fulde, Marcus T1 - Heteroresistance in Enterobacter cloacae complex caused by variation in transient gene amplification events N2 - Heteroresistance (HR) in bacteria describes a subpopulational phenomenon of antibiotic resistant cells of a generally susceptible population. Here, we investigated the molecular mechanisms and phenotypic characteristics underlying HR to ceftazidime (CAZ) in a clinical Enterobacter cloacae complex strain (ECC). We identified a plasmid-borne gene duplication-amplification (GDA) event of a region harbouring an ampC gene encoding a β-lactamase bla DHA-1 as the key determinant of HR. Individual colonies exhibited variations in the copy number of the genes resulting in resistance level variation which correlated with growth onset (lag times) and growth rates in the presence of CAZ. GDA copy number heterogeneity occurred within single resistant colonies, demonstrating heterogeneity of GDA on the single-cell level. The interdependence between GDA, lag time and antibiotic treatment and the strong plasticity underlying HR underlines the high risk for misdetection of antimicrobial HR and subsequent treatment failure. KW - Antimicrobial surfaces KW - Biocides KW - Antimicrobial resistance KW - Standardization PY - 2025 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-627057 DO - https://doi.org/10.1038/s44259-025-00082-7 VL - 3 IS - 1 SP - 1 EP - 14 PB - Springer AN - OPUS4-62705 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Vareschi, Silvia A1 - Jaut, Valerie A1 - Vijay, Srinivasan A1 - Allen, Rosalind J. A1 - Schreiber, Frank T1 - Antimicrobial efflux and biofilms: an interplay leading to emergent resistance evolution N2 - The biofilm mode of growth and drug efflux are both important factors that impede the treatment of bacterial infections with antimicrobials. Decades of work have uncovered the mechanisms involved in both efflux and biofilm-mediated antimicrobial tolerance, but links between these phenomena have only recently been discovered. Novel findings show how efflux impacts global cellular physiology and antibiotic tolerance, underpinned by phenotypic heterogeneity. In addition efflux can mediate cell-to-cell interactions, relevant in biofilms, via mechanisms including efflux of signaling molecules and metabolites, signaling using pump components and the establishment of local antibiotic gradients via pumping. These recent findings suggest that biofilm antibiotic tolerance and efflux are closely coupled, with synergistic effects leading to the evolution of antimicrobial resistance in the biofilm environment. KW - Evolution KW - Efflux KW - Antibiotics KW - Biofilms KW - Antimicrobial resistance KW - Phenotypic heterogeneity PY - 2025 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-632799 DO - https://doi.org/10.1016/j.tim.2025.04.012 SN - 0966-842X SP - 1 EP - 15 PB - Elsevier Ltd. AN - OPUS4-63279 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Lee, Mihyun A1 - Wiesli, Luzia A1 - Schreiber, Frank A1 - Ivask, Angela Ivask A1 - Ren, Qun T1 - Quantitative Assessment of Microbial Transmission onto Environmental Surfaces Using Thermoresponsive Gelatin Hydrogels as a Finger Mimetic under In Situ-Mimicking Conditions N2 - Surface-mediated transmission of pathogens plays a key role in healthcare-associated infections. However, proper techniques for its quantitative analysis are lacking, making it challenging to develop novel antimicrobial and anti-fouling surfaces to reduce pathogen spread via environmental surfaces. This study demonstrates a gelatin hydrogel-based touch transfer test, the HydroTouch test, to evaluate pathogen transmission on high-touch surfaces under semi-dry conditions. The HydroTouch test employs gelatin as a finger mimetic, facilitating testing with pathogenic bacteria under controlled conditions. The thermoresponsive sol–gel transition of gelatin allows easy recovery and quantification of bacteria before and after testing. The HydroTouch test demonstrates that methicillin-resistant Staphylococcus aureus has a high transmission efficiency of ≈16% onto stainless steel, compared to <3% for Escherichia coli or Pseudomonas aeruginosa. Polyurethane surfaces exhibit strong resistance to bacterial contamination with a transmission efficiency of ≈0.6%, while polytetrafluoroethylene shows a transmission efficiency approximately four times higher than polyurethane. Additionally, quaternary ammonium-based antimicrobial coatings reduce the transmission efficiency of live bacteria on stainless steel to ≈4% of the original level. The HydroTouch test provides a reliable method for assessing pathogen transmission on various surfaces under semi-dry settings, supporting the development of effective antimicrobial, anti-transmission coatings to reduce healthcare-associated infections. KW - Antimicrobial surfaces KW - Biocides KW - Antimicrobial resistance KW - Standardization PY - 2025 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-624566 DO - https://doi.org/10.1002/adhm.202403790 SN - 2192-2659 SP - 1 EP - 10 PB - Wiley VHC-Verlag AN - OPUS4-62456 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Kanaris, Orestis A1 - Schreiber, Frank T1 - Refuse in order to resist: metabolic bottlenecks reduce antibiotic susceptibility N2 - The growth of pathogenic bacteria in the host is a prerequisite for infectious diseases. Antibiotic drugs are used to impair bacterial growth and thereby treat infections. In turn, growth of bacteria is underpinned by their primary metabolism. Thus,it has long been recognized that the activity of antibiotics is determined by the metabolic state of cells. However, only recently researchers have begun to systematically interrogate the links between metabolism and resistance. In their recent study, Lubrano and colleagues (Lubranoet al, 2025) apply an elegant CRISPR-based approach to the model bacterium Escherichia coli to systematically screen the effect of 15,120 mutations in genes that encode for 346 proteins which are required for growth of E. coli (also referred to as ‘essential proteins’). The authors identified a multitude of mutations that reduce the susceptibility against two antibiotics related to two very distinct chemical classes; the β-lactam antibiotic carbenicillin and the aminoglycoside gentamicin. Strikingly, the majority of the identified mutations are directly linked to primary metabolism. The work highlights the importance of metabolism in order to understand antibiotic resistance mechanisms and the ecology and evolution of antibiotic resistance. In addition, the work provides leads to design metabolism-based intervention strategies to mitigate antibiotic resistance. KW - Metabolism KW - Antibiotic resistance PY - 2025 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-626608 DO - https://doi.org/10.1038/s44320-025-00089-2 SN - 1744-4292 VL - 21 IS - 3 SP - 211 EP - 213 AN - OPUS4-62660 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Braetz, S. A1 - Nordholt, Niclas A1 - Nerlich, A. A1 - Schreiber, Frank A1 - Tedin, K. A1 - Fulde, M. T1 - TisB enables antibiotic tolerance in Salmonella by preventing prophage induction through ATP depletion N2 - Antibiotic persistence comprises drug-tolerant bacteria that can survive treatment with antibacterial agents, despite lacking classical genetic resistance mechanisms. Therefore, persisters are clinically relevant because they can lead to treatment failures and chronic infections. Additionally, antibiotic persistence facilitates the evolution of resistance through genetic mutations. Persisters are triggered by a lack of nutrients, bacterial toxins, low ATP levels, or other stress responses that shut down bacterial metabolism. However, the involvement of prophages, viruses that integrate into bacterial chromosomes, is less well understood. In this study, we tested a tisAB deletion in Salmonella Typhimurium and examined persister cell formation following treatment with the DNA-damaging drug ciprofloxacin. TisB is a bacterial toxin that increases the influx of protons across the inner bacterial membrane into the cytosol, causing ATP depletion. We demonstrate that the deletion of tisAB increases prophage induction and bacterial killing, leading to a reduced persister cell fraction. The tisAB mutant is unable to down regulate its ATP concentration after exposure to ciprofloxacin, which in turn allows for stronger binding of RecA to single-stranded DNA, the activator of both the SOS response and prophage induction. KW - Antimicrobial resistance KW - Bacterial survival mechanisms KW - Escherichia coli KW - Salmonella typhimurium PY - 2025 DO - https://doi.org/10.1371/journal.ppat.1013498 IS - 9 SP - 1 EP - 23 AN - OPUS4-64642 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - European Food Safety Authority (EFSA), A1 - European Centre for Disease Prevention and Control (ECDC), A1 - European Chemicals Agency (ECHA), A1 - European Environment Agency (EEA), A1 - European Medicines Agency (EMA), A1 - European Commission's Joint Research Centre (JRC), T1 - Scientific report - Impact of the use of azole fungicides, other than as human medicines, on the development of azole‐resistant Aspergillus spp. N2 - The use of azoles in the European Union and European Economic Area (EU/EEA) other than as human medicines has raised concerns about emergence and spread of azole‐resistant Aspergillus species. EU agencies, with the support of JRC, reviewed the evidence and provided conclusions and recommendations on this topic. Although incomplete, data from 2010 to 2021 showed that around 120,000 tonnes of azoles were sold in EU/EEA for uses other than as human medicines. The majority are used as plant protection products (119,000 tonnes), with a stable temporal trend. Evidence supported a link between environmental azole exposure and cross‐resistance selection to medical azoles in Aspergillus species (primarily shown for A. fumigatus). Prevalence of azole‐resistant A. fumigatus in human A. fumigatus infections ranges from 0.7% to 63.6% among different disease presentations and geographic regions; mortality rates range from 36% to 100% for invasive aspergillosis (IA). It was concluded that azole usage outside the human domain is likely or very likely to contribute to selection of azole‐resistant A. fumigatus isolates that could cause severe disease like IA. Environmental hotspots for resistance selection were identified, including stockpiling of agricultural waste and their possible use as soil amendment/fertiliser for certain agricultural crops (for plant protection products) and freshly cut wood (for biocides). Recommendations were formulated on measures to prevent and control selection of azole resistance in A. fumigatus, including implementation of good agricultural/horticultural practices, proper agricultural and wood waste storage and management, and on approval of new azole fungicides or renewal of existing fungicides. Recommendations on topics to be covered by studies provided when submitting applications for the approval of azole fungicides were listed. For the evaluation of such studies within the approval procedure, a preliminary framework for risk assessment was developed and should be further refined. Data gaps and uncertainties were identified, alongside with respective recommendations to address them. KW - Antimicrobial surfaces KW - Biocides KW - Antimicrobial resistance KW - Azoles KW - Fungi KW - Wood preservatives PY - 2025 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-652175 DO - https://doi.org/10.2903/j.efsa.2025.9200 SN - 1831-4732 VL - 23 IS - 1 SP - 1 EP - 35 PB - Wiley CY - Hoboken, NJ AN - OPUS4-65217 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Liu, Cong A1 - Aumont, Cédric A1 - Mikhailova, Alina A. A1 - Audisio, Tracy A1 - Hellemans, Simon A1 - Weng, Yi-Ming A1 - He, Shulin A1 - Clitheroe, Crystal A1 - Wang, Zongqing A1 - Haifig, Ives A1 - Sillam-Dussès, David A1 - Buček, Aleš A1 - Tokuda, Gaku A1 - Šobotník, Jan A1 - Harrison, Mark C. A1 - McMahon, Dino P. A1 - Bourguignon, Thomas T1 - Unravelling the evolution of wood-feeding in termites with 47 high-resolution genome assemblies N2 - Termites are a lineage of social cockroaches abundant in tropical ecosystems where they are key decomposers of organic matter. Despite their ecological significance, only a handful of reference-quality termite genomes have been sequenced, which is insufficient to unravel the genetic mechanisms that have contributed to their ecological success. Here, we perform sequencing and hybrid assembly of 45 taxonomically and ecologically diverse termites and two cockroaches, resulting in haplotype-merged genome assemblies of 47 species, 22 of which were near-chromosome level. Next, we examine the link between termite dietary evolution and major genomic events. We find that Termitidae, which include ~80% of described termite species, have larger genomes with more genes and a higher proportion of transposons than other termites. Our analyses identify a gene number expansion early in the evolution of Termitidae, including an expansion of the repertoire of CAZymes, the genes involved in lignocellulose degradation. Notably, this expansion of genomes and gene repertoires coincided with the origin of soil-feeding in Termitidae and remained unchanged in lineages that secondarily reverted to a wood-based diet. Overall, our sequencing effort multiplies the number of available termite genomes by six and provides insights into the genome evolution of an ancient lineage of social insects. KW - Comparative genomics KW - Entomology KW - Genome evolution KW - Phylogenetics PY - 2025 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-651719 DO - https://doi.org/10.1038/s41467-025-65969-5 SN - 2041-1723 VL - 16 SP - 1 EP - 14 PB - Springer Science and Business Media LLC AN - OPUS4-65171 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Liu, Cong A1 - Hellemans, Simon A1 - Weng, Yi-Ming A1 - Mikhailova, Alina A. A1 - Aumont, Cédric A1 - Buček, Aleš A1 - Šobotník, Jan A1 - Harrison, Mark C. A1 - McMahon, Dino P. A1 - Bourguignon, Thomas T1 - Robust termite phylogenies built using transposable element composition and insertion events N2 - Phylogenetic trees are typically reconstructed using conserved sequence alignments. Other genomic elements, such as transposable elements (TEs), make up a large fraction of eukaryotic genomes but are ignored for phylogenetic reconstruction, despite potentially containing phylogenetic information, which could be used to resolve nodes that remain contentious. Here, we reconstructed accurate phylogenetic trees of 45 termites and two cockroaches using two types of characters derived from the TE landscape: (1) genome-wide presence and absence of 37,966 TE families and (2) presence/absence data of 37,966 TE families in the flanking regions of orthologous ultraconserved elements (UCEs), which was a proxy for TE insertions. The topologies of our TE-based phylogenetic trees were largely congruent with phylogenetic trees inferred from alignments of UCEs and single-copy orthologous genes, only differing for a few nodes variably reconstructed in other phylogenetic analyses. Notably, trees based on genome-wide TE family composition were more accurate than trees inferred from mitochondrial genome alignments, and trees based on TE family composition in regions flanking UCEs achieved comparable accuracy with trees inferred from single-copy orthologous gene alignments. Our results demonstrate that the TE landscape is phylogenetically informative, representing an additional set of markers for robust phylogenetic reconstructions, with potential use to resolve ambiguous nodes in the tree of life. KW - Comparative genomics KW - Genome evolution KW - Insects KW - Isoptera KW - Mitogenomes KW - Molecular markers KW - Phylogenomics KW - Transposons PY - 2025 DO - https://doi.org/10.1016/j.cub.2025.10.019 SN - 0960-9822 VL - 35 IS - 22 SP - 1 EP - 10 PB - Elsevier Inc. AN - OPUS4-64737 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Kittner, Maria A1 - Coesfeld, Bianca A1 - Schlau, Sven A1 - Werischak, Thomas A1 - Altmann, Korinna A1 - Kalbe, Ute T1 - Simultaneous sampling for microplastics and environmental contaminants from artificial turf: development of a new integrated microplastics eluate lysimeter N2 - To get a better understanding of potentially harmful contaminant emissions from soils or materials into the environment, politics demand practical and holistic sampling concepts for environmental samples such as leachates containing polycyclic aromatic hydrocarbons (PAH) or heavy metals, and hazardous particulate matter like microplastics (MP). Of particular concern are MP emissions from artificial turf sports pitches. So far, there has been only very limited data on MP mass emissions from artificial turf potentially posing a risk to the groundwater and no sampling device that allowed simultaneous sampling for dissolved and particulate contaminants. In this study, a novel integrative microplastics eluate lysimeter was developed to determine contaminant emissions from three artificial turf systems at different ageing states (fabric-new, artificially aged, real-time aged). For the accelerated ageing, all environmental simulation parameters were based on Central German conditions and simulated outdoor stress during the turf service lifespan of 15 years. MP masses from eluates were analysed using thermal extraction desorption-gas chromatography/mass spectrometry, PAH concentrations using gas chromatography/mass spectrometry and heavy metals using inductively coupled plasma-optical emission spectroscopy. Results showed that no PAH or heavy metal concentrations from the seepage water were above German legal limits for alternative granular construction materials considering soil and groundwater protection. Furthermore, it was found that only minimal MP emissions were released from new turf systems into the seepage water (< 1 mg/m2). Ageing of the artificial turf increased MP formation, especially from rubber infill and grass fibres, which are then carried into the seepage water. The highest total MP emissions over a simulated turf lifespan of 15 years were detected in two real-time aged turf systems ranging from 136.4–252.5 mg/m2. Considerably less total MP emissions were detected in accelerated aged artificial turf systems, one of which contained a synthetic rubber infill (5.4–8.0 mg/m2) and one without rubber infill (0.2–5.3 mg/m2). In summary, it was demonstrated that the newly developed MEL generated reliable and reproducible data and has thus proven itself as an integrated, straightforward and automated sampling device for simultaneous monitoring of particulate and dissolved pollutant emissions from simple soil matrices. KW - Lysimeter KW - Microplastics KW - Artificial turf KW - Thermal extraction desorption-gas chromatography/mass spectrometry KW - TED-GC/MS KW - Polycyclic aromatic hydrocarbons KW - PAH KW - Heavy metals KW - Soil samples PY - 2025 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-645301 DO - https://doi.org/10.1186/s12302-025-01235-1 SN - 2190-4715 VL - 37 IS - 1 SP - 1 EP - 15 PB - Springer Open AN - OPUS4-64530 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Keshmiri, Hamid A1 - Cikes, Domagoj A1 - Samalova, Marketa A1 - Schindler, Lukas A1 - Appel, Lisa-Marie A1 - Urbanek, Michal A1 - Yudushkin, Ivan A1 - Slade, Dea A1 - Weninger, Wolfgang J. A1 - Peaucelle, Alexis A1 - Penninger, Josef A1 - Elsayad, Kareem T1 - Brillouin light scattering anisotropy microscopy for imaging the viscoelastic anisotropy in living cells N2 - Maintaining and modulating mechanical anisotropy is essential for biological processes. However, how this is achieved at the microscopic scale in living soft matter is not always clear. Although Brillouin light scattering (BLS) spectroscopy can probe the mechanical properties of materials, spatiotemporal mapping of mechanical anisotropies in living matter with BLS microscopy has been complicated by the need for sequential measurements with tilted excitation and detection angles. Here we introduce Brillouin light scattering anisotropy microscopy (BLAM) for mapping high-frequency viscoelastic anisotropy inside living cells. BLAM employs a radial virtually imaged phased array that enables the collection of angle-resolved dispersion in a single shot, thus enabling us to probe phonon modes in living matter along different directions simultaneously. We demonstrate a precision of 10 MHz in the determination of the Brillouin frequency shift, at a spatial resolution of 2 µm. Following proof-of-principle experiments on muscle myofibres, we apply BLAM to the study of two fundamental biological processes. In plant cell walls, we observe a switch from anisotropic to isotropic wall properties that may lead to asymmetric growth. In mammalian cell nuclei, we uncover a spatiotemporally oscillating elastic anisotropy correlated to chromatin condensation. Our results highlight the role that high-frequency mechanics can play in the regulation of diverse fundamental processes in biological systems. We expect BLAM to find diverse applications in biomedical imaging and material characterization. KW - Optical and magnetic materials KW - Atomic and molecular physics and optics KW - Electronic PY - 2024 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-595125 DO - https://doi.org/10.1038/s41566-023-01368-w SN - 1749-4885 SN - 1749-4893 VL - 18 IS - 3 SP - 276 EP - 285 PB - Nature Publ. Group CY - London AN - OPUS4-59512 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Singh, Amit Kumar A1 - Mishra, Biswajit A1 - Sinha, Om Prakash T1 - Reduction Kinetics of Fluxed Iron Ore Pellets Made of Coarse Iron Ore Particles N2 - The present work demonstrates a sustainable approach of using relatively coarser iron ore particles for ironmaking. The motivation is to reduce the energy consumption in the milling of the iron ore by utilizing coarser iron ore particles (+0.05 mm) and to select a suitable binder for improving pellet properties. Iron ore fines in the range of 0.05–0.25 mm was selected and classified into three size ranges. Fluxed iron ore pellets were prepared using lime as a binder for the basicity of 0, 1, and 2. Reduction of these pellets with a packed bed of coal fines was performed in the temperature range of 900–1200 °C for a duration of 30–120 min. The direct reduction kinetics of the iron ore pellets were studied by employing diffusion and chemical reaction control models to the experimental data. The results show that pellets made with coarser iron ore particles have improved reduction behavior and kinetics. The reduction reaction is found to be a mixed control. The activation energy for the reduction reaction varies from 44.3 to 74.76 kJ mol−1 as iron ore particle size decreases from 0.25 to 0.05 mm and basicity increases from 0 to 2. KW - Materials Chemistry KW - Metals and Alloys KW - Process Metallurgy KW - Iron making PY - 2024 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-598326 DO - https://doi.org/10.1002/srin.202300669 SN - 1611-3683 IS - 2300669 SP - 1 EP - 9 PB - Wiley VHC-Verlag AN - OPUS4-59832 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Scholz, Philipp A1 - Vogel, Christian A1 - Schuck, G. A1 - Simon, Franz-Georg T1 - Speciation of copper and zinc compounds relevant for the hazard property (HP) 14 classification of municipal solid waste incineration bottom and fly ashes N2 - The analysis of the presence and content of substances that are toxic to aquatic life in waste is essential for classification of waste with regard to hazard property (HP) 14 ‘ecotoxic’. For the determination of HP14 classified copper (Cu) and zinc (Zn) compounds in various municipal solid waste incineration bottom ashes (IBA) and one fly ash (FA) from Germany we applied X-ray absorption near-edge structure (XANES) spectroscopy in combination with linear combination fitting. The analysis showed that approx. 50–70% of Cu in the IBA are Cu(I) compounds and elemental Cu(0), but these compounds were not equally distributed in the different IBA. In contrast, the majority (approx. 50–70%) of Zn in all IBA is elemental zinc, which originates from brass or other alloys and galvanized metals with a large content of zinc in the waste. The FA contain higher mass fraction on Zn and other toxic elements, but similar Cu and Zn species. Additional performed selective extraction at a pH of 4 with an organic acid of some IBA showed that the ecotoxic Zn fraction is mainly elemental zinc and zinc oxide. In contrast, for the ecotoxic Cu fraction within the IBA no specific compound could be identified. Furthermore, the XANES analysis showed that the HP14 properties of especially Cu in IBA is overestimated with current best-practice guidelines for sample processing for the current substance-related approach with the 0.1% cut-off rule for each substance. However, it should be considered whether it would not be better from an environmental point of view to take the ecotoxicologically leachable copper and zinc as a reference value. KW - Thermal waste treatment KW - XANES spectroscopy KW - Ecotoxicity KW - Incineration bottom ash PY - 2024 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-609584 DO - https://doi.org/10.1016/j.wasman.2024.09.001 VL - 189 SP - 421 EP - 426 PB - Elsevier Ltd. AN - OPUS4-60958 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Simon, Franz-Georg A1 - Scholz, Philipp T1 - Sequential Extraction of Incineration Bottom Ash: Conclusions Regarding Ecotoxicity N2 - The classification of incineration bottom ash (IBA) as hazardous or non-hazardous according to ecotoxic hazard property HP14 is still under debate. In this context, only the compounds of Zn and Cu with the hazard statement code H410 are of relevance. With an approach based on the grouping of substances, it was shown that such substances are either readily water-soluble or slightly and sparingly soluble. The concentrations of readily soluble Cu and Zn compounds in IBA are far below the cut-off value of 0.1%. Slightly and sparingly soluble Zn and Cu compounds could be quantified in the first fraction of a four-step sequential extraction procedure. With the results from the complete sequence, the dimensionless synthesis toxicity index (STI) was calculated and was in the range of 494 to 1218 for the four investigated IBA samples. It was concluded that IBA can usually be classified as non-hazardous. KW - Incineration bottom ash KW - Hazard properties KW - Ecotoxicity PY - 2024 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-605262 DO - https://doi.org/10.3390/app14135541 SN - 2076-3417 VL - 14 IS - 13 SP - 1 EP - 12 PB - MDPI CY - Basel AN - OPUS4-60526 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Scales, B. S. A1 - Hasenrück, C. A1 - Moldaenke, L. A1 - Hassa, J. A1 - Rückert-Reed, C. A1 - Rummel, C. A1 - Völkner, C. A1 - Rynek, R. A1 - Busche, T. A1 - Kalinowski, J. A1 - Jahnke, A. A1 - Schmitt-Jansen, M. A1 - Wendt-Potthoff, K. A1 - Oberbeckmann, Sonja T1 - Hunting for pigments in bacterial settlers of the Great Pacific Garbage Patch N2 - The Great Pacific Garbage Patch, a significant collection of plastic introduced by human activities, provides an ideal environment to study bacterial lifestyles on plastic substrates. We proposed that bacteria colonizing the floating plastic debris would develop strategies to deal with the ultravioletexposed substrate, such as the production of antioxidant pigments. We observed a variety of pigmentation in 67 strains that were directly cultivated from plastic pieces sampled from the Garbage Patch. The genomic analysis of four representative strains, each distinct in taxonomy, revealed multiple pathways for carotenoid production. These pathways include those that produce less common carotenoids and a cluster of photosynthetic genes. This cluster appears to originate from a potentially new species of the Rhodobacteraceae family. This represents the first report of an aerobic anoxygenic photoheterotrophic bacterium from plastic biofilms. Spectral analysis showed that the bacteria actively produce carotenoids, such as betacarotene and beta-cryptoxanthin, and bacteriochlorophyll a. Furthermore, we discovered that the genetic ability to synthesize carotenoids is more common in plastic biofilms than in the surrounding water communities. Our findings suggest that plastic biofilms could be an overlooked source of bacteria-produced carotenoids, including rare forms. It also suggests that photoreactive molecules might play a crucial role in bacterial biofilm communities in surface water. KW - Microplastics KW - Biofilm KW - Pigment KW - Microorganisms PY - 2024 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-605725 DO - https://doi.org/10.1111/1462-2920.16639 SN - 1462-2912 VL - 26 IS - 6 SP - e16639 PB - John Wiley & Sons Ltd. AN - OPUS4-60572 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Golian, M. J. A1 - Friedman, D. A. A1 - Harrison, M. A1 - McMahon, Dino Peter A1 - Buellesbach, J. T1 - Chemical and transcriptomic diversity do not correlate with ascending levels of social complexity in the insect order Blattodea N2 - AbstractEusocial insects, such as ants and termites, are characterized by high levels of coordinated social organization. This is contrasted by solitary insects that display more limited forms of collective behavior. It has been hypothesized that this gradient in sociobehavioral sophistication is positively correlated with chemical profile complexity, due to a potentially increased demand for diversity in chemical communication mechanisms in insects with higher levels of social complexity. However, this claim has rarely been assessed empirically. Here, we compare different levels of chemical and transcriptomic complexity in selected species of the order Blattodea that represent different levels of social organization, from solitary to eusocial. We primarily focus on cuticular hydrocarbon (CHC) complexity, since it has repeatedly been demonstrated that CHCs are key signaling molecules conveying a wide variety of chemical information in solitary as well as eusocial insects. We assessed CHC complexity and divergence between our studied taxa of different social complexity levels as well as the differentiation of their respective repertoires of CHC biosynthesis gene transcripts. Surprisingly, we did not find any consistent pattern of chemical complexity correlating with social complexity, nor did the overall chemical divergence or transcriptomic repertoire of CHC biosynthesis genes reflect on the levels of social organization. Our results challenge the assumption that increasing social complexity is generally reflected in more complex chemical profiles and point toward the need for a more cautious and differentiated view on correlating complexity on a chemical, genetic, and social level. KW - Chemical ecology KW - Ecological genetics KW - Entomology KW - Evolutionary ecology PY - 2024 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-608260 DO - https://doi.org/10.1002/ece3.70063 SN - 2045-7758 VL - 14 IS - 8 SP - 1 EP - 13 PB - Wiley AN - OPUS4-60826 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER -