TY - JOUR A1 - Cohen, Zina A1 - Hahn, Oliver A1 - Rabin, Ira A1 - Ward, Aengus T1 - Centenary Paper: Of Inks and Scribes: The Composition of a Thirteenth-Century Castilian Manuscript – British Library Res 20787 N2 - This article presents the results of the first scientific analysis of the inks of a thirteenth-century Castilian manuscript – British Library Res 20787, a copy of the Fuero de las leyes. The analysis reveals the fingerprint of the inks used in the codex and points the way to future cross-disciplinary research based on a wider corpus of evidence. KW - Archaeometry KW - Manuscript KW - Colorant KW - Cinnabar PY - 2024 DO - https://doi.org/10.3828/bhs.2024.56 SN - 1475-3839 VL - 101 SP - 703 EP - 720 PB - Liverpool University Press AN - OPUS4-61435 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - da Silva, Luiza Helena Bueno A1 - Goes, Aryel C. A1 - Rodrigues, Andre A1 - Fourcassié, Vincent A1 - McMahon, Dino Peter A1 - Haifig, Ives T1 - Social immune response reflects infection progression in a soldierless termite N2 - Social interactions represent a double-edged sword. On one hand, sociality can facilitate sanitary collective behaviours; on the other hand, it creates opportunities for pathogen transmission. In termites, sanitary behaviours can entail a rescuing strategy at early stages of infection, followed by the elimination at later stages. We explored whether the neotropical soldierless species Anoplotermes pacificus employs a progressive approach towards infected nestmates, with different behavioural displays depending on the infection stage. We infected A. pacificus workers with the fungus Metarhizium anisopliae and incubated them for 2, 12, 15 and 20 h, corresponding to infection progression and, therefore, severity. Infected termites were placed with naïve nestmates and their behaviours were recorded for 3 h. Fungus-infected termites triggered up to fourfold higher levels of sanitary behaviour than in non-infected termites. Antennation behaviour decreased during the observation period, whereas sanitary behaviour, which we defined as directed behaviour towards the focal termite involving mouthparts, increased in frequency as incubation duration increased. Sanitary behaviour therefore appears to be a strategy for colony disinfection, which varies in intensity according to infection status, ultimately resulting in the immobilisation of infected individuals at later stages of infection. Alarm responses were also up to three times more frequent in treatment than in control groups and did not vary with incubation duration. A. pacificus workers therefore identify, communicate and respond to pathogen-treated individuals in a progressive manner, indicating that collective responses in this species are also significantly shaped by the stage of infection. By progressively modulating their social immune responses, termites may be able to optimize resource allocation within the colony by balancing the risk of individual infection versus protection of the group. KW - Anoplotermes pacificus KW - Isoptera KW - Infection KW - Metarhizium KW - Social immunity PY - 2024 DO - https://doi.org/10.1007/s00265-024-03556-2 VL - 79 IS - 1 SP - 1 PB - Springer Science and Business Media LLC AN - OPUS4-62397 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - de Araujo Abilio, André A1 - Wolodko, John D. A1 - Eckert, Richard B. A1 - Skovhus, Torben L. T1 - Development of an expert system for assessing failures in oil and gas pipelines due to microbiologically influenced corrosion (MIC) N2 - This study highlights the modeling of an expert system for the classification of internal microbiologically influenced corrosion (MIC) failures related to pipelines in the upstream oil and gas industry. The model is based on artificial neural networks (ANNs) and involves the participation of 15 MIC experts. Each expert evaluated a number of model case studies ranging from MIC- to non-MIC-driven upstream pipeline failures. The model accounts for variations in microbiological testing methods, microbiological sample types, and degradation morphology, among other variables. It also accounts for missing datasets, which is commonly the case in actual failure assessments. The outcome is an expert system model whose outputs are classes (classification ANN) which comprises MIC potential and data confidence. The performances of two approaches are contrasted in this study. One classifies the output in 5 classes, a 5-output classification (5OC) model; the other in 3 classes, a 3-output classification (3OC) model. The 5OC model had an accuracy of 62.0% while the simpler 3OC model had a better accuracy of 74.8%. This modelling exercise has demonstrated that knowledge from experts can be captured in a reasonably effective model to screen for possible MIC failures. It is hoped that this study not only may contribute to a better understanding of the prevalence of MIC in the oil and gas sector, but also may highlight the key areas necessary to improve the diagnosis of MIC failures in the future. KW - Corrosion engineering KW - Oil and gas pipelines KW - Carbon steel KW - Artificial neural networks (ANNs) KW - Failure analysis KW - Microbiologically influenced corrosion (MIC) KW - Expert systems PY - 2024 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-632084 DO - https://doi.org/10.1016/j.engfailanal.2024.108426 SN - 1350-6307 VL - 163 SP - 1 EP - 16 PB - Elsevier Ltd. AN - OPUS4-63208 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Dehkohneh, Abolfazl T1 - From microscale to macroscale: how environmental conditions impact the growth of the black fungus Knufia petricola N2 - Environmental, black fungi are known for their oligotrophic lifestyle and melanin production and ubiquitous colonisers of natural and anthropogenic subaerial surfaces like marble monuments, washing machine soap dispensers and solar panels. Even though their growth is generally unappreciated, prevention or inhibition thereof is still to be accomplished. We have chosen the black fungus Knufia petricola as a model species to study these organisms as it is genetically amenable, able to colonise and deteriorate minerals and produces extracellular polymeric substances allowing attachment. Our goal is simple: the quantitative description of its growth on various environmental conditions to create a mathematical model which could allow the development of a mitigation strategy. The conditions to be tested are the quantity and type of carbon and nitrogen sources, the pH and the presence of neighbouring colonies. The mathematical model is in development using the iDynoMiCS 2.0 platform. Our first results showed that the growth rate is negatively correlated to the colony forming units (i.e. the presence of a neighbouring colony). Although interesting with respect to mitigation, we therefore have chosen to track the growth of single colonies. On a macro-scale, the highest extension rates of colonies were at pH 5, 0.01M NO3, 0.01M NH4, 0.1M glucose, and 0.1M sucrose. Interesting are the similar rates in the range of 0.01M to 0.1M for carbon, and that CO2 production on similar conditions correlates well with these results. On a microscale, we have followed the growth of single cells using a custom-made microfluidic flow cell. Overall, first results show that medium containing more carbon not necessarily affected the growth rate but rather the quantity of branches produced by a single cell. This rapidly results in a more compact microcolony versus the more extended colonies on C-deficient media. This more profound knowledge on the growth of black fungi will allow to dissect their role in material deterioration and colonisation. T2 - International Biodeterioration & Biodegradation Society (IBBS) CY - Berlin, Germany DA - 09.09.2024 KW - Black fungi KW - Rock-inhabiting fungi KW - Fungal biofilm KW - Individual-based modelling PY - 2024 AN - OPUS4-62141 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Dehkohneh, Abolfazl T1 - From microscale to macroscale: environmental conditions and growth patterns of the black fungus Knufia petricola N2 - Environmental, black fungi are known for their oligotrophic lifestyle and melanin production and ubiquitous colonisers of natural and anthropogenic subaerial surfaces like marble monuments, washing machine soap dispensers and solar panels. Even though their growth is generally unappreciated, prevention or inhibition thereof is still to be accomplished. We have chosen the black fungus Knufia petricola as a model species to study these organisms as it is genetically amenable, able to colonise and deteriorate minerals and produces extracellular polymeric substances allowing attachment. Our goal is simple: the quantitative description of its growth on various environmental conditions to create a mathematical model which could allow the development of a mitigation strategy. The conditions to be tested are the quantity and type of carbon and nitrogen sources, the pH and the presence of neighbouring colonies. The mathematical model is in development using the iDynoMiCS 2.0 platform. Our first results showed that the growth rate is negatively correlated to the colony forming units (i.e. the presence of a neighbouring colony). Although interesting with respect to mitigation, we therefore have chosen to track the growth of single colonies. On a macro-scale, the highest extension rates of colonies were at pH 5, 0.01M NO3, 0.01M NH4, 0.1M glucose, and 0.1M sucrose. Interesting are the similar rates in the range of 0.01M to 0.1M for carbon, and that CO2 production on similar conditions correlates well with these results. On a microscale, we have followed the growth of single cells using a custom-made microfluidic flow cell. Overall, first results show that medium containing more carbon not necessarily affected the growth rate but rather the quantity of branches produced by a single cell. This rapidly results in a more compact microcolony versus the more extended colonies on C-deficient media. This more profound knowledge on the growth of black fungi will allow to dissect their role in material deterioration and colonisation. T2 - CurvoBio 2024 CY - Warsaw, Poland DA - 28.08.2024 KW - Black fungi KW - Rock-inhabiting fungi KW - Fungal biofilm KW - Individual-based modelling KW - Biocorrosion PY - 2024 AN - OPUS4-62270 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Desvergnes, Amélie Couvrat A1 - Helman-Wazny, Agnieszka T1 - Sialkoti paper used by Pahari artists: Raw materials and fibre analysis N2 - This study aims to characterise the so-called Sialkoti paper used to produce Pahari drawings preserved today in the Wereldmuseum in Leiden (Netherlands) (WML). These works originate from the Punjab Hills in India (today Himachal Pradesh) and are commonly known as ‘Pahari miniature paintings’. The paper upon which these drawings are executed is said to have been produced in Sialkot during the eighteenth and nineteenth centuries when papermaking was an integral part of an overall regional economy correlated with other sectors such as agriculture and the textile industry. Although the term Sialkoti refers to identified papermills in Sialkot (now Pakistan), the paper from this region is yet to be subjected to a systematic study. This article therefore explores the paper(s) in question through macro- and microscopic observations of structure, pulp and fibres. The study of historical sources, complemented by the analysis of paper samples and fibre identification, has revealed that the pulp would have been prepared from a variety of manufactured products using different technologies, such as rags, cloth, mats, rope and other plant-based materials made from local bast fibres which, once tattered, were recycled to prepare the pulp. Microscopic study reveals that a variety of fibre combinations under different conditions and processing steps were used, in particular sunn hemp fibre (Crotalaria juncea L.), a plant species that has until now rarely been identified in historical paper. In addition, the presence of kenaf and jute fibres, as well as a significant quantity of cotton fibres, have also been demonstrated. To overcome the lack of comparative materials, our work was supported by a comparative study of several materials made from sunn hemp now held in the Ethnobotany Collection at Kew Gardens. Samples were taken from these materials and provided useful reference micrographs for the identification of the WML samples. The quality of the paper used by Pahari artists, as well as the raw materials available and their processing, are discussed in detail. Putting all the data, including technical and historical information into perspective, we conclude that the Pahari artists used a paper of inferior quality compared to other types of paper used for other purposes such as the creation of illuminated manuscripts in the Punjab plains. This study therefore provides useful analytical and material evidence that complements previous historical, technical and anthropological studies. KW - Sialkoti paper KW - Pahari drawings KW - Indian handmade paper KW - Sunn hemp KW - Fibre identification KW - Microscopy PY - 2024 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-645216 DO - https://doi.org/10.1186/s40494-024-01360-9 SN - 2050-7445 VL - 12 SP - 1 EP - 18 PB - Springer CY - Cham AN - OPUS4-64521 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - BOOK A1 - Dietz, G. A1 - Eggert, Claudia A1 - Golle, U. A1 - Hahn, Oliver A1 - Ketelsen, T. A1 - Ludwig, A. A1 - Melzer, C. A1 - Rabin, Ira A1 - Wintermann, C. ED - Hahn, Oliver ED - Doil, Thorsten ED - Wintermann, C. T1 - The materiality of drawings - A scientific approach N2 - Volume 5 of the N.i.Ke. series presents the current state of materials science and imaging techniques used in the examination of drawings. The first part of the publication introduces the classic drawing substrates and materials. The middle part of the publication describes the relevant materials science and imaging techniques. The final part discusses the possibilities and limitations of these methods using several case studies. KW - Archaeometry KW - Paper KW - Parchment KW - Drawing materials KW - Drawings KW - Nondestructive testing PY - 2024 SN - 2567-1251 N1 - Es gibt eine parallele Sprachausgabe (deutsch), ein Link befindet sich im Feld zugehöriger Identifikator - There is a parallel language edition (German), a link is in the field related identifier VL - 5 SP - VII EP - 110 PB - Bundesanstalt für Materialforschung und -prüfung (BAM) CY - Berlin AN - OPUS4-63672 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - THES A1 - Erdmann, Eileen A. T1 - Genetic tools for targeted genome editing and random mutagenesis of the rock-inhabiting black fungus Knufia petricola N2 - Rock-inhabiting black fungi are ubiquitously found on sun-exposed natural and human-made surfaces. These stresstolerant biofilm-formers are known to force the deterioration of the colonized surfaces. Black fungi belong to different classes of Ascomycota (Arthoniomycetes, Eurotiomycetes, and Dothideomycetes) but evolved the same morpho-physiological adaptations such as strong melanized multilayered cell walls and slow yeast-like or meristematic growth to resist extreme environmental conditions. The rock-inhabitant Knufia petricola was chosen as representative of the polyphyletic group of black fungi for studying mineral weathering, biofilm formation, and interaction with phototrophic microbes. For understanding the molecular basis of these traits, the genetic information and its regulation must be explored. Thus, the genome was sequenced, first -omics datasets obtained and protocols for the transformation of protoplasts and CRISPR/Cas9-based genome editing were implemented to enable genetic studies. In scope of this work, the transformation protocol was optimized to improve the regeneration of K. petricola protoplasts. The successful implementation of multiplexed CRISPR/Cas9 and three additional selection marker systems (geneticin/nptII, glufosinate/bar, chlorimuron ethyl/sur) extended the existing strategies for targeted genome editing. While in the first promoter studies only constitutive promoters (PoliC, PgpdA) were identified as appropriate for expression of fluorescent reporter genes in K. petricola, the functionality of an inducible promoter (synthetic TET-on promoter system) could later be demonstrated. The identification and validation of defined genomic insertion sites enabled the neutral or color-based selection (igr1-5 or pks1, phs1, ade2) as well as the detection of correctly integrated expression constructs. Using the color-based transformant screening (black – pink/white/rose) accelerated the selection of transformants, especially for localization and protein-protein interaction studies (e.g., by studying bimolecular fluorescence complementation). Additionally, the fusion of two or three genes via the viral P2A motif was shown to allow the expression of multiple genes from a single expression cassette/integration site. Finally, the established tools enabled the implementation of a forward genetics tool (customized Ac/Ds transposon system) for regulatable in-vivo mutagenesis of K. petricola. The isolation and characterization of revertants/Ds reinsertion mutants demonstrated the functionality of the system which marks an important milestone for assigning functions to yet unknown species- and/or trait-specific genes. In sum, the genetic engineering toolbox is now fully equipped which paves the way for exploring the biology of K. petricola and other black fungi. KW - Microcolonial fungi KW - Genetic engineering KW - CRISPR/Cas9-mediated genome editing KW - DHN melanin KW - Transposon mutagenesis PY - 2024 SP - 1 EP - 231 CY - Berlin AN - OPUS4-62364 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Erdmann, Eileen A. A1 - Brandhorst, Antonia K. M. A1 - Gorbushina, Anna A1 - Schumacher, Julia T1 - The Tet‑on system for controllable gene expression in the rock‑inhabiting black fungus Knufia petricola N2 - Knufia petricola is a black fungus that colonizes sun-exposed surfaces as extreme and oligotrophic environments. As ecologically important heterotrophs and biofilm-formers on human-made surfaces, black fungi form one of the most resistant groups of biodeteriorating organisms. Due to its moderate growth rate in axenic culture and available protocols for its transformation and CRISPR/Cas9-mediated genome editing, K. petricola is used for studying the morpho-physiological adaptations shared by extremophilic and extremotolerant black fungi. In this study, the bacteria-derived tetracycline (TET)-dependent promoter (Tet-on) system was implemented to enable controllable gene expression in K. petricola. The functionality i.e., the dose-dependent inducibility of TET-regulated constructs was investigated by using GFP fluorescence, pigment synthesis(melanin and carotenoids) and restored uracil prototrophy as reporters. The newly generated cloning vectors containing the Tet-on construct, and the validated sites in the K. petricola genome for color-selectable or neutral insertion of expression constructs complete the reverse genetics toolbox. One or multiple genes can be expressed on demand from different genomic loci or from a single construct by using 2A self-cleaving peptides, e.g., for localizing proteins and protein complexes in the K. petricola cell or for using K. petricola as host for the expression of heterologous genes. KW - Microcolonial fungi KW - Inducible promoter KW - Bimolecular fluorescence complementation KW - 2A peptide KW - CRISPR/ Cas9-mediated genome editing PY - 2024 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-607672 DO - https://doi.org/10.1007/s00792-024-01354-2 VL - 28 IS - 38 SP - 1 EP - 13 PB - Springer Nature AN - OPUS4-60767 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Fuentes, Elsa A1 - Prieto, Beatriz T1 - Effect of climate change on phototrophic biofilms colonizing granitic rocks and their biodeteriogenic activity. N2 - Material cultural heritage from NW of the Iberian Peninsula is linked to the use or presence of granite, whether in historical buildings, sculptures, archaeological sites or any other artistic manifestation. This resistant material has the ideal physical characteristics that favor its longevity, but, like any material exposed to the environment, it is susceptible to deterioration. To this respect, environmental changes due to climate change and global change may modify biological colonization-substrate interactions. The main objective of the present research was to analyse the effects of Climate Change, more specifically changes in water availability, increased temperature, increased CO2 concentrations and changes in UV-B radiation patterns, on the survival and biodeteriogenic activity of phototrophic biofilms on granite heritage and the consequences for the built heritage. Both field and laboratory work were carried out. Field studies were conducted on three rural churches to characterise the current biological colonization. A higher proportion of algae than cyanobacteria was identified, with the genera Trentepohlia and Desmococcus standing out among the former. The most common current fungi are lichenised fungi, but black fungal genera such as Catenulostroma, Rhinocladiella and Knufia were also identified. Bacterial genera related to the production of sphinganes, EPS, carotenoids and some causing the so-called pink discolouration are also present. The effect of climate change on the growth and physiological state of the organisms was analysed in the laboratory. For this purpose, mixed biofilms were developed in the laboratory and exposed to changing conditions of temperature, water availability, CO2 and UV-B. A reduction in growth was observed with increasing water restriction, although in the initial colonization process, rock bioreceptivity was shown to be a more important aspect in favoring anchorage and retention of organisms. Temperature was shown to have a growth-enhancing effect when water availability was low, whereas an increase in CO2 only resulted in increased growth under conditions of high-water availability. Increased UV-B produced a reduction in growth, especially at the highest dose (equivalent to the current dose of a west-facing wall in southern Portugal, which is considered as high), while little difference in the physiological state of the organisms was observed at the current doses in Galicia (considered as medium) and southern Ireland (considered as low). Clear changes in microbial composition were observed, with a trend towards increased or greater resistance of cyanobacteria to higher temperature, lower water availability and higher UV-B doses. In addition, all these changes in development, physiological and microbial composition had an effect on the predominant pigments, tending towards more yellowish-brownish colourations, and on the ability of the organisms to generate biodeterioration by affecting ion concentrations on water solutions by enhancing their consumption or adhesion which lead to granite deterioration. Future work should take into account the combination of a greater number of climatic parameters simultaneously and also the possible resistances associated with the nature of the SAB community studied. T2 - 19th International Biodeterioration and Biodegradation Symposium CY - Berlin, Germany DA - 09.09.2024 KW - Biofilm KW - Granite KW - Climate change KW - Biodeterioration KW - Cultural heritage PY - 2024 AN - OPUS4-62271 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER -