TY - CONF A1 - Jaut, Valerie T1 - Antibiotic tolerance of biofilms emerging from multicellular effects of antibiotic efflux N2 - Biofilms are multicellular assemblages of bacteria living in a self-produced extracellular matrix. Different mechanisms, like the development of highly tolerant persister cells or increased expression of efflux pumps make them tolerant. Here we want to investigate the emergency of antimicrobial tolerance of multicellular bacterial populations, through the interplay of efflux-mediated spatial interactions and efflux-linked persistence. To this end, we are combining computational modelling with experimentally observations gained from three types of multicellular assemblages, i.e. colonies on agar, multicellular populations grown in a monolayer microfluidic device, and 3D biofilms grown in flow chambers. We generated fluorescently labeled E. coli strains that differ in their levels of AcrAB-TolC efflux pump activity, an acrB knockout-strain and a strain with inducible expression of acrAB. All strains were characterized in terms of their antimicrobial susceptibility of three antibiotics, tetracycline, kanamycin, ampicillin, and the biocide benzalkonium chloride. The knockout strain shows higher susceptibility than the wild type strain, with highest difference when using benzalkonium chlorid e. To investigate the link between colony structure and spatial patterns of gene expression, the strains were mixed equimolar and grown on agar supplemented with antimicrobials. First results show, antimicrobials affect the structure of sector formation and morphology. Cells grown on tetracycline agar show a more finer sector formation. While kanamycin changes the overall colony structure . We will develop a mathematical model and additional experiments with multicellular assemblages to explain the observed interactions and extrapolate the results to more realistic biofilm models. T2 - SPP Conference CY - Berlin, Germany DA - 06.01.2025 KW - Antimicrobial KW - Resistance KW - Tolerance KW - Efflux KW - E. coli PY - 2025 AN - OPUS4-64563 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Jaut, Valerie T1 - Antibiotic tolerance of biofilms emerging from multicellular effects of antibiotic efflux N2 - Biofilms are multicellular assemblies of bacteria living in a self-produced extracellular matrix. One characteristic of biofilms is that they are difficult to kill. Different mechanisms, like the development of persister cells or efflux pumps which pump some antimicrobials out of the cell, make them tolerant. Our central hypothesis is that efflux pump activity causes emergent antimicrobial tolerance of multicellular bacterial populations, through the interplay of efflux-mediated spatial interactions and efflux-linked persistence. To verify the hypothesis, we combine computational modelling with information gained from 3 types of multicellular assemblies. We are currently generating strains that differ in their levels of efflux activity, mixes are then cultivated together in the 3 model systems. In colonies the link between structure and spatial patterns of gene expression will be characterized. Using a microfluidic device, the interactions range of efflux as a response to different antimicrobials will be determined. In a flow chamber a 3D biofilm will be generated, to investigate the biofilm development over time and persister cell formation. All results will be compared with model predictions. T2 - UNA Workshop CY - Berlin, Germany DA - 29.01.2024 KW - Antibiotic KW - Biofilm KW - Tolerance KW - Efflux PY - 2024 AN - OPUS4-61280 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Kanaris, Orestis T1 - Consequences of benzalkonium chloride tolerance on the development of antibiotic resistance in E. coli N2 - Biocides are used in large amounts in industrial, medical, and domestic settings. Benzalkonium chloride (BAC) is a commonly used biocide, for which previous research revealed that Escherichia coli can rapidly adapt to tolerate BAC-disinfection, with consequences for antibiotic susceptibility. However, the consequences of BAC-tolerance for selection dynamics and resistance evolution to antibiotics remain unknown. Here, we investigated the effect of BAC-tolerance in E. coli on its response upon challenge with different antibiotics. Competition assays showed that subinhibitory concentrations of ciprofloxacin - but not ampicillin, colistin and gentamicin - select for the BAC-tolerant strain over the BAC-sensitive ancestor at a minimal selective concentration of 0.0013-0.0022 µg∙mL-1. In contrast, the BAC-sensitive ancestor was more likely to evolve resistance to ciprofloxacin, colistin and gentamicin than the BAC-tolerant strain when adapted to higher concentrations of antibiotics in a serial transfer laboratory evolution experiment. The observed difference in the evolvability of resistance to ciprofloxacin was partly explained by an epistatic interaction between the mutations conferring BAC-tolerance and a knockout mutation in ompF encoding for the outer membrane porin F. Taken together, these findings suggest that BAC-tolerance can be stabilized in environments containing low concentrations of ciprofloxacin, while it also constrains evolutionary pathways towards antibiotic resistance. T2 - µClub Seminar CY - Berlin, Germany DA - 23.05.2025 KW - Biocides KW - AMR KW - Resistance evolution PY - 2025 AN - OPUS4-64658 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Kanaris, Orestis T1 - Consequences of benzalkonium chloride tolerance in Escherichia coli: Effects on selection and evolution in the presence of ciprofloxacin N2 - We investigated the selection dynamics between a benzalkonium chloride (BAC)-tolerant Escherichia coli strain (S4) and a sensitive wild type under four conditions: in the absence of antibiotics and in the presence of three different sub-inhibitory concentrations of the antibiotic ciprofloxacin in liquid cultures. The wild type was selected over the BAC-tolerant strain in the absence of antibiotics, while the opposite was observed at all ciprofloxacin concentrations investigated.Furthermore, we assessed the evolvability of resistance of the two strains to inhibitory concentrations of ciprofloxacin by performing a serial dilution evolution experiment with gradually increasing ciprofloxacin concentrations. The wild type had a higher probability to develop resistance to ciprofloxacin than the tolerant strain. By the end of the evolution experiment both strains evolved to grow at the highest ciprofloxacin concentration investigated, which was 2048 ×MIC of the wild type. T2 - 6th international symposium on the environmental dimention of antibiotic resistance-EDAR 6 CY - Gothenburg, Sweden DA - 22.09.2022 KW - Antimicrobial resistance KW - Tolerance KW - Experimental evolution KW - Selection PY - 2022 AN - OPUS4-56808 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Keshmiri, Hamid T1 - Plasmon-enhanced diffractive supercells N2 - Multiple diffractive surface modulations can concurrently couple the light to several electromagnetic surface waves. We present a multi-resonant plasmonic supercell structure with a broad range of applicability in harvesting the light over an extensive wavelength range and angles of incidence. T2 - Molecular Plasmonics 2023 CY - Jena, Germany DA - 11.05.2023 KW - Optics PY - 2023 AN - OPUS4-59248 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Keshmiri, Hamid T1 - Bidiffractive leaky-mode biosensor N2 - This study details a thorough analysis of leaky and waveguide modes in biperiodic diffractive nanostructures. By tuning diffraction orders and subsequently confining local density of optical states at two distinct resonance wavelengths, we present a highly sensitive refractive index biosensing platform that can resolve 35.5 to 41.3 nm/RIU of spectral shift for two separate biological analytes. T2 - EMBL Symposium: Seeing is Believing - Imaging the Molecular Processes of Life CY - Heidelberg, Germany DA - 04.10.2023 KW - Optics PY - 2023 AN - OPUS4-59247 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Koerdt, Andrea T1 - Simulating Microbiologically Influenced Corrosion (MIC) at Seabed Environment in Monopile N2 - Ensuring the safety of offshore wind structures (OWS) is critical to guaranteeing their long-term performance and supporting reliable green energy supply. Microbiologically influenced corrosion (MIC) presents a significant challenge, particularly for monopiles in seabed environments. This study investigates the behavior of microorganisms and their impact on the corrosion process of carbon steel within monopiles. To simulate MIC at the sediment/water interface, an in-house experimental column was developed and inoculated with sediment and water samples from the North Sea. The system was operated under varying flow rates to replicate seabed movement conditions. Multiple molecular microbiological methods, surface analysis techniques, and other approaches were employed to assess the effects of different treatments. This study provides insights into MIC mechanisms in offshore environments and supports the development of strategies to monitor MIC in OWS infrastructure T2 - ISMOS10 CY - Nashville, TN, USA DA - 11.08.2025 KW - MIC KW - Environmental Simulation KW - Field testing KW - Marine Environment PY - 2025 AN - OPUS4-64298 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Koerdt, Andrea T1 - Technical challenges for the investigation of Microbiologically influenced corrosion under laboratory conditions across several sectors N2 - Microbiologically influenced corrosion MIC occurs in different sectors, under various conditions and can significantly contribute to material degradation. The most convincing effect can be observed with sulphate-reducing bacteria (SRB). There are many stakeholders who do not need to be convinced of this as there is ample scientific evidence clearly showing that SRBs corrode metal. However, many believe this is solely due to the produced H2S. Fewer people are aware that SRBs also have other mechanisms that can lead to corrosion, such as electrical MIC on metal (direct electron uptake from the metal used as electron donor). Despite this, many sectors or industries remain skeptical in several areas. When considering other classes or species, the skepticism increases even more. The reason is simple: microbiologist cannot consistently prove MIC on laboratory scale for all corrosive microorganisms. In contrast to materials sciences, where experiments can be narrowed down to a limited number of parameters, microbiology is too complex to simulate simply in the lab. Several factors are mandatory for the growth of microorganisms, consequently increasing the number of parameters. Even when making the system more complex, there are still unknown species in the field, whose growth conditions are not yet understood. We know via 16S rRNA analysis that the species is present, but that is all we know. If these samples are enriched in the lab, many species will not survive and their impact on the whole community cannot be investigated. Therefore, lab tests related to MIC works only for a certain number of microorganisms. This means the key-result for other disciplines are missing, and important numbers for calculating the lifespan of a material can only be provided with limited accuracy. This is neither satisfying nor useful for engineers, material scientist or similar professionals, and it is understandable. However, MIC occurs, and we need to address it in our infrastructure or other important areas. With this presentation, I aim to show the currently available techniques for testing on a laboratory scale. I will use SRBs and methanogenic archaea as examples to highlight the advantages and disadvantages of each method and point out where improvements are needed. The examples will be cross-sectoral and applicable to other sectors as well. This talk will highlight the currently existing challenges of testing MIC in the laboratory and may help generate creative solutions. T2 - MICxUS 2025 CY - Nicosia, Cyprus DA - 21.01.2025 KW - MIC KW - Biocorrosion KW - Laboratory testing KW - Interdisziplinarity KW - Microorganisms PY - 2025 UR - https://www.unic.ac.cy/ehresearch/micxus2025/#tab-98dc74f32bf3b8f95bd AN - OPUS4-63725 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Koerdt, Andrea T1 - Exploring Microbial Impacts on Hydrogen Storage: - A Novel System for Corrosion Testing of Gas- and Material Degradation N2 - Underground hydrogen storage (UHS) is a strategic step towards implementing the hydrogen economy. Achieving the required infrastructure by 2050 necessitates advancements in hydrogen-dedicated assets and the evaluation of existing infrastructure. The unique conditions in UHS require an experimental set-up to simulate UHS operating conditions, which allows to assess the readiness of current storage and transmission for hydrogen, and develop new technologies for material-resistance, operational-simulations, and risk-assessments. In addition to the physical/chemical conditions in UHS (e.g., salinity, hydrogen concentration, operating temperature/-pressure, water content), biological threats must also be considered. Therefore, we present here a high-pressure-set-up, developed for research/-industrial testing purposes. Currently, UHS-experiments for microbiologically-influenced-corrosion (MIC) are performed in standard autoclaves with relatively high volumes/pressures; they were primarily designed for material-specific investigations. While these methods provided some useful information for biological questions, they had significant limitations. The novel UHS-simulation-set-up presented here is designed with a controlled independently temperature and pressure. Field samples can be used to mimic geology, water chemistry, construction materials, and microbiological conditions. Most significant advantages of the set-up are: 1. It allows for liquid addition during the test, enabling the study of biocides or the evaluation of operating setups. 2. It permits liquid/-gas sampling during the test, allowing for more efficient monitoring of testing conditions and a better understanding of the process over time. Additionally, a low-release function is added, which is particularly important for studying MIC to avoid negative side effects, on the material (e.g. polymers/corrosion product-layer/cells itself) which might occur due to the fast pressure release T2 - ISMOS10 CY - Nashville, TN, USA DA - 11.08.2025 KW - MIC KW - MISTRAL KW - Corrosion KW - Environmental simulation KW - Metall KW - Polymer PY - 2025 AN - OPUS4-64297 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Mezera, Marek T1 - Bacterial adhesion on femtosecond laser-induced periodic surface structures N2 - Biofilm formation in industrial or medical settings is usually unwanted and leads to serious health problems and high costs. Inhibition of initial bacterial adhesion prevents biofilm formation and is, therefore, a major mechanism of antimicrobial action of surfaces. Surface topography largely influences the interaction between bacteria and surfaces which makes topography an ideal base for antifouling strategies and eco-friendly alternatives to chemical surface modifications. Femtosecond laser-processing was used to fabricate sub-micrometric surface structures on silicon and stainless steel for the development of antifouling topographies on technical materials. T2 - Future Tech Week 2020 CY - Online meeting DA - 21.09.2020 KW - Laser-induced periodic surface structures (LIPSS) KW - Bacterial adhesion KW - Biofilm growth KW - Structural color KW - Femtosecond laser processing PY - 2020 UR - http://futuretechweek.fetfx.eu/wp-content/uploads/gravity_forms/2-5432af7ecff9e0243d7383ab3f931ed3/2020/09/BioCombs4Nanofibers_Poster-for-Future_Tech_Week_2020_08-09-2020_with_Reprint-permission_for_upload.pdf AN - OPUS4-51233 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER -