TY - JOUR A1 - Schoetz, U. A1 - Deliolanis, N.C. A1 - Ng, D. A1 - Pauli, Jutta A1 - Resch-Genger, Ute A1 - Kühn, E. A1 - Heuer, S. A1 - Beisker, W. A1 - Köster, R.W. A1 - Zitzelsberger, H. A1 - Caldwell, R.B. T1 - Usefulness of a Darwinian system in a biotechnological application: evolution of optical window fluorescent protein variants under selective pressure N2 - With rare exceptions, natural evolution is an extremely slow process. One particularly striking exception in the case of protein evolution is in the natural production of antibodies. Developing B cells activate and diversify their immunoglobulin (Ig) genes by recombination, gene conversion (GC) and somatic hypermutation (SHM). Iterative cycles of hypermutation and selection continue until antibodies of high antigen binding specificity emerge (affinity maturation). The avian B cell line DT40, a cell line which is highly amenable to genetic manipulation and exhibits a high rate of targeted integration, utilizes both GC and SHM. Targeting the DT40's diversification machinery onto transgenes of interest inserted into the Ig loci and coupling selective pressure based on the desired outcome mimics evolution. Here we further demonstrate the usefulness of this platform technology by selectively pressuring a large shift in the spectral properties of the fluorescent protein eqFP615 into the highly stable and advanced optical imaging expediting fluorescent protein Amrose. The method is advantageous as it is time and cost effective and no prior knowledge of the outcome protein's structure is necessary. Amrose was evolved to have high excitation at 633 nm and excitation/emission into the far-red, which is optimal for whole-body and deep tissue imaging as we demonstrate in the zebrafish and mouse model. KW - Fluorescent protein KW - Quantum yield PY - 2014 DO - https://doi.org/10.1371/journal.pone.0107069 SN - 1932-6203 VL - 9 IS - 9 SP - e107069-1 EP - e107069-12 PB - PubMed Central AN - OPUS4-31976 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Resch-Genger, Ute T1 - Optical Properties and Surface Chemistry of Quantum Dots, Polymeric and Upconversion Nanoparticles T2 - SPIE Photonics West 2014 (international society for optics and photonics) CY - San Francisco, CA, USA DA - 2014-02-01 PY - 2014 AN - OPUS4-30200 LA - deu AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Rödiger, S. A1 - Liebsch, C. A1 - Schmidt, C. A1 - Lehmann, W. A1 - Resch-Genger, Ute A1 - Schedler, U. A1 - Schierack, P. T1 - Nucleic acid detection based on the use of microbeads: a review N2 - Microbead-based technologies represent elegant and versatile approaches for highly parallelized quantitative multiparameter assays. They also form the basis of various techniques for detection and quantification of nucleic acids and proteins. Nucleic acid-based methods include hybridization assays, solid-phase PCR, sequencing, and trapping assays. Microbead assays have been improved in the past decades and are now important tools in routine and point-of-care diagnostics as well as in life science. Its advances include low costs, low workload, high speed and high-throughput automation. The potential of microbead-based assays therefore is apparent, and commercial applications can be found in the detection and discrimination of single nucleotide polymorphism, of pathogens, and in trapping assays. This review provides an overview on microbead-based platforms for biosensing with a main focus on nucleic acid detection (including amplification strategies and on selected probe systems using fluorescent labeling). Specific sections cover chemical properties of microbeads, the coupling of targets onto solid surfaces, microbead probe systems (mainly oligonucleotide probes), microbead detection schemes (with subsections on suspension arrays, microfluidic devices, and immobilized microbeads), quantification of nucleic acids, PCR in solution and the detection of amplicons, and methods for solid-phase amplification. We discuss selected trends such as microbead-coupled amplification, heterogeneous and homogenous DNA hybridization assays, real-time assays, melting curve analysis, and digital microbead assays. We finally discuss the relevance and trends of the methods in terms of high-level multiplexed analysis and their potential in diagnosis and personalized medicine. Contains 211 references. KW - Microbead KW - Microbead array KW - PCR KW - Microfluidic KW - Real-time KW - Multiplex PY - 2014 DO - https://doi.org/10.1007/s00604-014-1243-4 SN - 0026-3672 SN - 1436-5073 VL - 181 IS - 11-12 SP - 1151 EP - 1168 PB - Springer CY - Wien AN - OPUS4-31183 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CHAP A1 - Resch-Genger, Ute A1 - Hoffmann, Katrin A1 - Pauli, Jutta ED - Brahme, A. T1 - Signal-relevant properties of fluorescent labels and optical probes and their determination N2 - Luminescence techniques are among the most populär analytical and detection tools in the life Sciences (Das et al., 2012; Kobayashi et al., 2010; Lakowicz, 2006; Weissleder and Pittet, 2008). The ever-growing interest in these methods that yield fluorophore-specific quantities such as emission and excitation spectra, fluorescence quantum yields, fluorescence lifetimes, and emission anisotropies is due to their comparable ease of use; noninvasive character; potential for combining spectrally, temporally, and spatially resolved ineasurements; and suitability for multiplexing and remote sensing (Resch-Genger et al., 2005a). Moreover, fluorescence detection techniques can provide sensitivity down to the single-molecule level. As the vast majority of analytes or targets of interest are nonfluorescent and most endogenous chromophores typically display rather low fluorescence quantum yields, the tremendous analytical potential of photoluminescence techniques initiated also the development of an ever-growing number of fluorescent labels and probes as readily available tools for a broad variety of analytes and applications and the labeling of biomolecules such as oligonucleotides, antibodies, or peptides as detailed in the chapter "Fluorescent Reporters and Optical Probes: Dye Conjugation Chemistry, Spectroscopic Properties, and Design Concepts" (Berezin and Achilefu, 2010; Escobedo et al., 2010; Luo et al., 2011; Resch-Genger and Licha, 2011; Resch-Genger et al., 2008). Prominent examples of such dye-biomolecule conjugates are fluorophore-labeled secondary antibodies, for example, for immunohistochemistry or flow cytometry, and conventional contrast agents, consisting of a fluorescent reporter and a biomarker-specific biomolecule like a peptide, antibody, or antibody fragment for in vivo near-infrared (NIR) fluorescence imaging of pathological changes in the spectral window of 650-950 nm. These contrast agents are often referred to as targeted optical probes. In addition, more sophisticated Systems are increasingly emerging, the optical properties of which can be modulated selectively by Chemical or biological inputs (Elias et al., 2008; Kobayashi et al., 2011; Resch-Genger and Licha, 2011). PY - 2014 SN - 978-0-444-53632-7 DO - https://doi.org/10.1016//B978-0-444-53632-7.00408-1 VL - 4 SP - Chapter 4.02, 15 EP - 26 PB - Elsevier CY - Amsterdam AN - OPUS4-31433 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Oberleitner, Lidia A1 - Grandke, Julia A1 - Mallwitz, F. A1 - Resch-Genger, Ute A1 - Garbe, L.-A. A1 - Schneider, Rudolf T1 - Fluorescence polarization immunoassays for the quantification of caffeine in beverages N2 - Homogeneous fluorescence polarization immunoassays (FPIAs) were developed and compared for the determination of caffeine in beverages and cosmetics. FPIAs were performed in cuvettes in a spectrometer for kinetic FP measurements as well as in microtiter plates (MTPs) on a multimode reader. Both FPIAs showed measurement ranges in the µg/L range and were performed within 2 and 20 min, respectively. For the application on real samples, high coefficients of variations (CVs) were observed for the performance in MTPs; the CVs for FPIAs in cuvettes were below 4%. The correlations between this method and reference methods were satisfying. The sensitivity was sufficient for all tested samples including decaffeinated coffee without preconcentration steps. The FPIA in cuvettes allows a fast, precise, and automated quantitative analysis of caffeine in consumer products, whereas FPIAs in MTPs are suitable for semiquantitative high-throughput screenings. Moreover, specific quality criteria for heterogeneous assays were applied to homogeneous immunoassays. KW - caffeine KW - Decaffeinated coffee KW - Fluorescence polarization immunoassay KW - Homogeneous immunoassay KW - Quality assurance criteria PY - 2014 DO - https://doi.org/10.1021/jf4053226 SN - 0021-8561 SN - 1520-5118 VL - 62 IS - 11 SP - 2337 EP - 2343 PB - American Chemical Society CY - Columbus, Ohio AN - OPUS4-30613 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Leubner, S. A1 - Schneider, Ralf A1 - Dubavik, A. A1 - Hatami, Soheil A1 - Gaponik, N. A1 - Resch-Genger, Ute A1 - Eychmüller, A. T1 - Influence of the stabilizing ligand on the quality, signal-relevant optical properties, and stability of near-infrared emitting Cd1-xHgxTe nanocrystals N2 - Bright and stable near-infrared (NIR) and infrared (IR) emitting chromophores are in high demand for applications in telecommunication, solar cells, security barcodes, and as fluorescent reporters in bioimaging studies. The best choice for wavelengths >750 nm are semiconductor nanocrystals, especially ternary or alloy nanocrystals like CdHgTe, which enable size and composition control of their optical properties. Here, we report on the influence of growth time and surface chemistry on the composition and optical properties of colloidal CdHgTe. Up to now, these are the only NIR and IR emissive quantum dots, which can be synthesized in high quality in water, using a simple one-pot reaction. For this study we utilized and compared three different thiol ligands, thioglycolic acid (TGA), 3-mercaptopropionic acid (MPA), and glutathione (GSH). Aiming at the rational design of bright NIR- and IR-emissive alloy materials, special emphasis was dedicated to a better understanding of the role of the surface ligand and adsorption–desorption equilibria on the photoluminescence quantum yield and stability. In this respect, dilution and protonation studies were performed. Our results show that with this simple synthetic procedure, strongly fluorescent CdHgTe colloids can be obtained with MPA as stabilizing ligand revealing quantum yields as high as 45% independent of particle concentration. PY - 2014 DO - https://doi.org/10.1039/c4tc00582a SN - 2050-7526 SN - 2050-7534 VL - 2 IS - 25 SP - 5011 EP - 5018 PB - Royal Soc. of Chemistry CY - Cambridge AN - OPUS4-31073 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Grabolle, Markus A1 - Pauli, Jutta A1 - Brehm, Robert A1 - Resch-Genger, Ute T1 - Structural control of dye-protein binding, aggregation and hydrophilicity in a series of asymmetric cyanines N2 - Aiming at the rational design and the identification of brilliant fluorescent reporters for targeted optical probes and fluorescence assays in biological matrices, we systematically assessed the correlation between dye–protein binding, dye aggregation, and dye hydrophilicity for bioanalytically relevant fluorescent labels. Here, we report on the influence of sulfonic acid groups on dye aggregation and dye–serum protein interactions exemplarily for a family of NIR-emissive cyanine dyes, the DY-67x fluorophores. For highly hydrophobic dyes like DY-675 and DY-676, which show a strong tendency for aggregation in phosphate buffer saline solution, the dye–protein binding constants determined spectroscopically using a 2-state binding model, which considers only protein-bound and unbound dye molecules, can be influenced by the dimerization of the unbound dyes. To consider and quantify this influence, we expanded this common photometric method to a 3-state model that accounts for the presence of dye aggregates in the binding studies. Our results can be exploited for the screening of fluorescent reporters, efficiently providing information on the size of dye–protein interactions and on maximally achievable fluorescence quantum yields in biological systems. KW - Cyanine dye KW - Dye–protein interaction KW - BSA KW - Binding constant KW - Hydrophilicity KW - Aggregation PY - 2014 DO - https://doi.org/10.1016/j.dyepig.2013.11.027 SN - 0143-7208 SN - 1873-3743 VL - 103 SP - 118 EP - 126 PB - Elsevier Ltd. CY - Kidlington AN - OPUS4-30054 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Dietrich, Paul A1 - Hennig, Andreas A1 - Holzweber, Markus A1 - Thiele, T. A1 - Borcherding, H. A1 - Lippitz, Andreas A1 - Schedler, U. A1 - Resch-Genger, Ute A1 - Unger, Wolfgang T1 - Surface analytical study of poly(acrylic acid)-grafted microparticles (beads): characterization, chemical derivatization, and quantification of surface carboxyl groups N2 - We report a surface analytical study of poly(methyl methacrylate) (PMMA) microparticles (beads) with a grafted shell of poly(acrylic acid) (PAA) with thicknesses up to 4 nm using scanning electron microscopy (SEM), X-ray photoelectron spectroscopy (XPS), time-of-flight secondary ion mass spectrometry (ToF-SIMS), and near-edge X-ray adsorption fine structure (NEXAFS) spectroscopy. These polymer microparticles were analyzed before and after reaction of the surface carboxyl (CO2H) groups with 2,2,2-trifluoroethylamine (TFEA) to gain a better understanding of methods with use of covalently bound probe molecules for surface group analysis. The results obtained with chemical derivatization XPS using TFEA are discussed in terms of surface quantification of reactive CO2H groups on these PAA-coated microparticles. A labeling yield of about 50% was found for TFEA-derivatized particles with amounts of surface-grafted CO2H groups of 99 µmol/g or more, which is consistent with predicted reaction yields for homogeneously dispersed PAA hydrogels. KW - Polymer microparticles KW - Poly(acrylic acid)-grafted microparticles KW - Beads KW - XPS KW - SEM KW - NEXAFS KW - Surface analysis KW - Fluorine labeling PY - 2014 DO - https://doi.org/10.1021/jp505519g SN - 1932-7447 SN - 1089-5639 VL - 118 IS - 35 SP - 20393 EP - 20404 PB - Soc. CY - Washington, DC AN - OPUS4-31326 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Kreitner, C. A1 - Grabolle, Markus A1 - Resch-Genger, Ute A1 - Heinze, K. T1 - Dual emission and excited-state mixed-valence in a quasi-symmetric dinuclear Ru-Ru complex N2 - The synthesis and characterization of the new dinuclear dipeptide [(EtOOC-tpy)Ru(tpy-NHCO-tpy)Ru(tpy-NHCOCH3)]4+ 34+ of the bis(terpyridine)ruthenium amino acid [(HOOC-tpy)Ru(tpy-NH2)]2+ 12+ are described, and the properties of the dipeptide are compared to those of the mononuclear complex [(EtOOC-tpy)Ru(tpy-NHCOCH3)]2+ 42+ carrying the same functional groups. 34+ is designed to serve a high electronic similarity of the two ruthenium sites despite the intrinsic asymmetry arising from the amide bridge. This is confirmed via UV–vis absorption and NMR spectroscopy as well as cyclic voltammetry. 42+ and 34+ are emissive at room temperature, as expected. Moreover, 34+ exhibits dual emission from two different triplet states with different energies and lifetimes at room temperature. This is ascribed to the presence of a unique thermal equilibrium between coexisting [RuII(tpy-NHCO-tpy·–)RuIII] and [RuIII(tpy-NHCO-tpy·–)RuII] states leading to an unprecedented excited-state RuIIRuIII mixed-valent system via the radical anion bridge tpy-NHCO-tpy·–. The mixed-valent cation 35+, on the other hand, shows no measurable interaction of the RuIIRuIII centers via the neutral bridge tpy-NHCO-tpy (Robin–Day class I). Reduction of 34+ to the radical cation 33+ by decamethylcobaltocene is bridge-centered as evidenced by rapid-freeze electron paramagnetic resonance spectroscopy. Interestingly, all attempts to observe 33+ via NMR and UV–vis absorption spectroscopy only led to the detection of the diamagnetic complex 3-H3+ in which the bridging amide is deprotonated. Hence 3-H3+ (and 4-H+) appear to reduce protons to dihydrogen. The ease of single and double deprotonation of 42+ and 34+ to 4-H+, 3-H3+, and 3-2H2+ was demonstrated using a strong base and was studied using NMR and UV–vis absorption spectroscopies. The equilibrating excited triplet states of 34+ are reductively quenched by N,N-dimethylaniline assisted by hydrogen bonding to the bridging amide. KW - Dual emission KW - Excited state mixed-valence KW - Electron transfer KW - Ruthenium KW - Terpyridine KW - Amide acidity PY - 2014 DO - https://doi.org/10.1021/ic5020362 SN - 0020-1669 SN - 1520-510X VL - 53 IS - 24 SP - 12947 EP - 12961 PB - American Chemical Society CY - Washington, DC AN - OPUS4-32536 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CHAP A1 - Licha, K. A1 - Resch-Genger, Ute ED - Brahme, A. T1 - Fluorescent reporters and optical probes N2 - Organic fluorescent dyes are a fundamental component in biomedical research and diagnostic imaging. The major classes encompass polymethine dyes, xanthene dyes, 4,4'-difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY) dyes, phenoxazines, and rare earth metal complexes. These compounds have been synthesized in manifold variations to optimize their photophysical properties and physicochemical behavior in physiological media and to enable conjugation to targeting molecules and nanocarriers. Furthermore, stimuli-responsive structural motifs were designed to apply these fluorophores as sensors for disease-related physiological and molecular conditions. This chapter is devoted to the chemical base of optical imaging agents, covering the relevant properties of fluorophores and the synthetic concepts toward intelligent optical imaging probes. KW - Chemistry KW - Fluorescent dye KW - Labeling KW - Near-infrared KW - Optical imaging KW - Sensor PY - 2014 SN - 978-0-444-53632-7 DO - https://doi.org/10.1016/B978-0-444-53632-7.00402-0 VL - 4 SP - Chapter 4.08, 85 EP - 109 PB - Elsevier CY - Amsterdam AN - OPUS4-31635 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER -