TY - GEN A1 - Glauer, M. A1 - Schilling, Markus A1 - Stappel, M. T1 - A practical ontology development guide N2 - Knowledge representation is becoming increasingly important in view of the large amounts of data that are handled in the modern scientific landscape. Many of the domains that have most readily realised this problem and worked on potential solutions have been the domain of biochemistry. And although the developments sought here were not accompanied by philosophers, this process organically led to the development of formal and structured representations of certain domains. While the resulting structures were not the first formal ontologies, they are ones that are still in wide use to this day. These approaches have led to major advances in the organisation, structuring and communication of scientific results. Since then, a variety of other domains have tried to adapt a similar process and develop their own ontologies. However, the development of ontologies from the domain of biochemistry was the result of a years-long process that also involved a large number of errors and course corrections. One of the greatest challenges is also one of the greatest strengths of ontologies: Interoperability with other ontologies. To ensure this interoperability, ontologies must follow certain principles. In the field of biochemistry, the OBO Foundry has established itself, which offers functionalities for a rich network of ontologies from the domain, but at the same time also defines rules. The purpose of this document is to define a similar set of rules for open ontology development, but which addresses a broader domain and at the same time lowers the barrier of entry for new ontology developers. To this end, we will outline a workflow that can be used to build new ontologies more efficiently. This workflow is based not only on our own years of experience in ontology development, but also on the rules of external experts such as the OBO Foundry. KW - Ontology KW - Data integration KW - Ontologie KW - Data interoperability PY - 2024 UR - https://scientific-ontology-network.github.io/ UR - https://github.com/scientific-ontology-network/ontology-development-guide/releases/download/v0.1.0/ontology-guide.pdf SP - 1 EP - 27 PB - GitHub CY - San Francisco ET - Version 0.1 AN - OPUS4-61140 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Winkler, T. A1 - Hoenig, E. A1 - Huber, G. A1 - Janssen, R. A1 - Fritsch, D. A1 - Gildenhaar, Renate A1 - Berger, Georg A1 - Morlock, M.M. A1 - Schilling, A.F. T1 - Osteoclastic bioresorption of biomaterials: Two- and three-dimensional imaging and quantification N2 - Purpose: Bioresorbable materials have been developed in the hope that the body will replace them with newly formed tissue. The first step of this remodeling process in bone is the bioresorption of the material by osteoclasts. The aim of this study was to analyze osteoclastic resorption of biomaterials in vitro using the commonly used two-dimensional methods of light-microscopy (LM) and scanning electron microscopy (SEM) in comparison with infinite focus microscopy (IFM), a recently developed imaging method allowing for three-dimensional surface analysis. Methods: Human hematopoietic stem cells were cultivated in the presence of the cytokines M-CSF and RANK-L for 4 weeks directly on dentin and a calcium phosphate cement. Osteoclast development was surveyed with standard techniques. After removal of the cells, resorption was characterized and quantified by LM, SEM and IFM. Results: Osteoclast cultures on the biomaterials presented the typical osteoclast-specific markers. On dentin samples LM, SEM as well as IFM allowed for discrimination of resorption. Quantification of the resorbed area showed a linear correlation between the results (LM vs. SEM: r=0.996, p=0.004; SEM vs. IFM: r=0.989, p=0.011; IFM vs. LM: r=0.995). It was not possible to demarcate resorption pits on GB14 using LM or SEM. With IFM, resorption on GB14 could be visualized and quantified two- and three-dimensionally. KW - Biomaterial KW - Three-dimensional KW - IFM KW - Osteoclast KW - Dentin KW - Calcium phosphate PY - 2010 SN - 0391-3988 VL - 33 IS - 4 SP - 198 EP - 203 PB - Wichtig Ed. CY - Milano [u.a.] AN - OPUS4-21621 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Winkler, T. A1 - Hoenig, E. A1 - Gildenhaar, Renate A1 - Berger, Georg A1 - Fritsch, D. A1 - Janssen, R. A1 - Morlock, M.M. A1 - Schilling, A.F. T1 - Volumetric analysis of osteoclastic bioresorption of calcium phosphate ceramics with different solubilities N2 - Commonly, to determine osteoclastic resorption of biomaterials only the resorbed area is measured. The depth of the resorption pit, however, may also be important for the performance of a material. To generate such data we used two calcium phosphate ceramics (Ca10 and Ca2). The solubility of the materials was determined according to DIN EN ISO 10993-14. They were scanned three-dimensionally using infinite focus microscopy and subsequently cultivated for 4 weeks in simulated body fluid without (control) or with human osteoclasts. After this cultivation period osteoclasts number was determined and surface changes were evaluated two- and three-dimensionally. Ca10 and Ca2 showed solubilities of 11.0 ± 0.5 and 23.0 ± 2.2 mg g-1, respectively. Both materials induced a significant increase in osteoclast number. While Ca10 did not show osteoclastic resorption, Ca2 showed an increased pit area and pit volume due to osteoclastic action. This was caused by an increased average pit depth and an increased number of pits, while the average area of single pits did not change significantly. The deduced volumetric osteoclastic resorption rate (vORR) of Ca2 (0.01–0.02 µm3 µm-2 day-1) was lower than the remodelling speed observed in vivo (0.08 µm3 µm-2 day-1), which is in line with the observation that implanted resorbable materials remain in the body longer than originally expected. Determination of volumetric indices of osteoclastic resorption might be valuable in obtaining additional information about cellular resorption of bone substitute materials. This may help facilitate the development of novel materials for bone substitution. KW - Biodegradation KW - Surface analysis KW - Simulated body fluid KW - Osteoclasts KW - Calcium phosphate ceramics PY - 2010 DO - https://doi.org/10.1016/j.actbio.2010.04.015 SN - 1742-7061 VL - 6 IS - 10 SP - 4127 EP - 4135 PB - Elsevier CY - Amsterdam AN - OPUS4-22554 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Richter, Regina A1 - Maierhofer, Christiane A1 - Kreutzbruck, Marc A1 - Schilling, M. T1 - Numerical method of active thermography for the reconstruction of back wall geometry N2 - The paper presents numerical methods to detect and classify defects and inhomogeneities by means of active thermography. The objective is to determine the wall thickness of structure elements with an inaccessible back wall, for example, of pipes or Containers. As test specimens we used approximately 2 cm thick PVC samples with spatial variations in the back wall geometry. Flash lamps provided the heating. To know the thickness of the wall, we used two inversion methods and compared the results achieved. One is an iterative echo defect shape method and already tested on Steel test specimens with good reconstruction results. The second one is the Levenberg-Marquardt method, applied here to thermographic data for non-destructive testing. Since data capturing using active thermography and the presented numerical methods can easily be automated, the combination of these two procedures is a promising approach providing a broad area of application. T2 - 6th Workshop 'NDT in progress' CY - Prague, Czech Republic DA - 10.10.2011 KW - Impulse-thermography KW - Inversion KW - Levenberg-Marquardt method KW - Echo defect shape KW - Defect shape reconstruction PY - 2011 SN - 978-80-214-4339-6 IS - Chapter 8 SP - 245 EP - 252 AN - OPUS4-25144 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Herm, C. A1 - Krug, Sonja A1 - Mazurek, J. A1 - Schilling, M. T1 - Giovanni Ambrogio Bevilacqua 'Maria, das Kind anbetend' - painting material analysis PY - 2008 SN - 0931-7198 VL - 22 IS - 1 SP - 20 EP - 26 PB - Werner CY - Worms AN - OPUS4-27537 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Lak, A. A1 - Thünemann, Andreas A1 - Schilling, M. A1 - Ludwig, F. T1 - Resolving particle size modality in bi-modal iron oxide nanoparticle suspensions N2 - Particle size modality in bi-modal iron oxide suspensions was resolved by exploiting complex ac-susceptibility (ACS), small angle X-ray scattering (SAXS) and photon cross-correlation spectroscopy. To explain dynamic magnetic response of bi-modal suspensions, the Debye model was expanded to a linear superposition form allowing for the contribution of both particle fractions. This modified and adopted model is able to resolve the bi-modal particle size distributions. The SAXS curves of mono- and bi-modal suspensions were fitted well using a Monte Carlo simulation scheme, allowing the detection of bi-modal particle size distributions with high precision. KW - Iron oxide nanoparticle KW - Bi-modal size distribution characterization KW - Complex ac-susceptibility KW - Small angle X-ray scattering KW - Modeling KW - Nanotechnology KW - SAXS KW - Nanoparticles PY - 2015 DO - https://doi.org/10.1016/j.jmmm.2014.08.050 SN - 0304-8853 VL - 380 SP - 140 EP - 143 PB - Elsevier CY - Amsterdam AN - OPUS4-32563 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER -