TY - JOUR A1 - Flores, E. A1 - Idrees, F. A1 - Moussay, P. A1 - Viallon, J. A1 - Wielgosz, R. A1 - Fernández, T. A1 - Rojo, A. A1 - Ramírez, S. A1 - Aoki, N. A1 - Kato, K. A1 - Jeongsoon, L. A1 - Moon, D. A1 - Kim, J.-S. A1 - Harling, A. A1 - Milton, M. A1 - Smeulders, D. A1 - Guenther, F.R. A1 - Gameson, L. A1 - Botha, A. A1 - Tshilongo, J. A1 - Ntsasa, N.G. A1 - Valková, M. A1 - Konopelko, L. A1 - Kustikov, Y.A. A1 - Ballandovich, V. S. A1 - Gromova, E.V. A1 - Tuma, Dirk A1 - Kohl, Anka A1 - Schulz, Gert T1 - Final report of the pilot study CCQM-P110-B1: A comparison of nitrogen dioxide (NO2) in nitrogen standards at 10 µmol/mol by Fourier transform infrared spectroscopy (FT-IR) JF - Metrologia N2 - This pilot study compares the performance of participants in analyzing gas mixtures of nitrogen dioxide in nitrogen by comparison with in-house gravimetric standards using Fourier transformed infrared spectroscopy (FT-IR). In this study the same gas mixtures were used as in the key comparison CCQM-K74, which was designed to evaluate the level of comparability of National Metrology Institutes' measurement capabilities for nitrogen dioxide (NO2) at a nominal mole fraction of 10 µmol/mol. In the comparison CCQM-K74 most of the participants used chemiluminescence, with a small number using UV absorption or FT-IR spectroscopy, and thus it is of interest to improve understanding of the comparative performance of these techniques because they do not exhibit any cross-sensitivity to nitric acid (HNO3), which was known to be present in the mixtures used for the comparison. The results of this pilot study indicate good consistency and a level of agreement similar to that reported in the comparison CCQM-K74, demonstrating that FT-IR can be operated as a comparison method when calibrated with appropriate gas standards and can achieve similar measurement uncertainties to chemiluminescence and UV absorption techniques. An additional pilot study, CCQM-P110-B2, was conducted on the same gas mixtures in parallel with this pilot study. The second study addressed FT-IR spectroscopy when used to measure the gas mixtures with respect to reference spectra. The results of this second study will be reported elsewhere. Main text. To reach the main text of this paper, click on Final Report. The final report has been peer-reviewed and approved for publication by the CCQM-GAWG. DatesIssue 1A (Technical Supplement 2012) KW - Ringversuch KW - NO2 KW - Spurenverunreinigungen KW - FT-IR-Spektroskopie PY - 2012 DO - https://doi.org/10.1088/0026-1394/49/1A/08006 SN - 0026-1394 SN - 1681-7575 VL - 49 IS - 08006 SP - 1 EP - 76 PB - Inst. of Physics Publ. CY - Bristol AN - OPUS4-25928 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Heeger, Felix A1 - Bourne, E. C. A1 - Wurzbacher, C. A1 - Funke, E. A1 - Lipzen, A. A1 - He, G. A1 - Ng, V. A1 - Grigoriev, I. V. A1 - Schlosser, D. A1 - Monaghan, M. T. T1 - Evidence for Lignocellulose-Decomposing Enzymes in the Genome and Transcriptome of the Aquatic Hyphomycete Clavariopsis aquatica JF - Journal of Funghi N2 - Fungi are ecologically outstanding decomposers of lignocellulose. Fungal lignocellulose degradation is prominent in saprotrophic Ascomycota and Basidiomycota of the subkingdom Dikarya. Despite ascomycetes dominating the Dikarya inventory of aquatic environments, genome and transcriptome data relating to enzymes involved in lignocellulose decay remain limited to terrestrial representatives of these phyla. We sequenced the genome of an exclusively aquatic ascomycete (the aquatic hyphomycete Clavariopsis aquatica), documented the presence of genes for the modification of lignocellulose and its constituents, and compared differential gene expression between C. aquatica cultivated on lignocellulosic and sugar-rich substrates. We identified potential peroxidases, laccases, and cytochrome P450 monooxygenases, several of which were differentially expressed when experimentally grown on different substrates. Additionally, we found indications for the regulation of pathways for cellulose and hemicellulose degradation. Our results suggest that C. aquatica is able to modify lignin to some extent, detoxify aromatic lignin constituents, or both. Such characteristics would be expected to facilitate the use of carbohydrate components of lignocellulose as carbon and energy sources. KW - Aquatic fungi KW - Differential expression KW - Lignocellulose KW - Laccase KW - RNA-Seq PY - 2021 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-536843 DO - https://doi.org/10.3390/jof7100854 VL - 7 IS - 10 SP - 2 EP - 11 PB - MDPI CY - Basel, Schweiz AN - OPUS4-53684 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Ermilov, Eugeny A. A1 - Liu, J.-Y. A1 - Menting, R. A1 - Huang, Y.-S. A1 - Röder, B. A1 - Ng, D. K. P. T1 - An artificial photosynthetic model based on a molecular triad of boron dipyrromethene and phthalocyanine JF - Physical Chemistry Chemical Physics N2 - A boron dipyrromethene (BDP) unit and its monostyryl derivative (MSBDP) were introduced at the axial positions of a silicon(IV) phthalocyanine (SiPc) core. The absorption spectrum of this compound virtually covered the entire visible region (300-700 nm) and could be interpreted as a superposition of the spectra of individual components. The intramolecular photoinduced energy and charge transfer processes of this triad were studied using steady-state and time-resolved spectroscopic methods in polar and nonpolar solvents. Upon BDP-part excitation, a fast and highly efficient excitation energy transfer (EET) occurred resulting in strong quenching of its fluorescence and the formation of the first excited singlet state of SiPc or MSBDP. It was found that both EET and charge transfer (CT) processes competed with each other in the depopulation of the first excited singlet state of the MSBDP moiety. The former strongly superseded CT in nonpolar toluene, whereas the latter was dominant in a polar environment. Direct or indirect (via EET) excitation of the SiPc-part of the triad was followed by CT yielding the charge-separated (CS) species BDP-SiPc center dot--MSBDP center dot+. The energy gap between the CS state and the S-1-state of the SiPc moiety was found to be only 0.06 eV in toluene, which facilitated the back CT process and resulted in the appearance of thermally activated delayed fluorescence. With increasing solvent polarity, the energy of the CS state reduced resulting in the disappearance of the delayed fluorescence in CHCl3, tetrahydrofuran or N,N-dimethylformamide. The charge recombination rate, k(CR), was very fast in polar DMF (3.3 x 10(10) s(-1)), whereas this process was two-orders of magnitude slower in nonpolar toluene (k(CR) = 4.0 x 10(8) s(-1)). KW - Photoinduced electron-transfers KW - Zinc phthalocyanine KW - Solar-energy KW - Charge separation KW - Solvent polarity KW - Porphyrin KW - Excitation KW - Fullerene KW - Recombination KW - Carotenoids PY - 2016 DO - https://doi.org/10.1039/c6cp00920d VL - 18 IS - 16 SP - 10964 EP - 10975 PB - Royal Soc Chemistry CY - Cambridge, UK AN - OPUS4-36271 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Schoetz, U. A1 - Deliolanis, N.C. A1 - Ng, D. A1 - Pauli, Jutta A1 - Resch-Genger, Ute A1 - Kühn, E. A1 - Heuer, S. A1 - Beisker, W. A1 - Köster, R.W. A1 - Zitzelsberger, H. A1 - Caldwell, R.B. T1 - Usefulness of a Darwinian system in a biotechnological application: evolution of optical window fluorescent protein variants under selective pressure JF - PLoS one N2 - With rare exceptions, natural evolution is an extremely slow process. One particularly striking exception in the case of protein evolution is in the natural production of antibodies. Developing B cells activate and diversify their immunoglobulin (Ig) genes by recombination, gene conversion (GC) and somatic hypermutation (SHM). Iterative cycles of hypermutation and selection continue until antibodies of high antigen binding specificity emerge (affinity maturation). The avian B cell line DT40, a cell line which is highly amenable to genetic manipulation and exhibits a high rate of targeted integration, utilizes both GC and SHM. Targeting the DT40's diversification machinery onto transgenes of interest inserted into the Ig loci and coupling selective pressure based on the desired outcome mimics evolution. Here we further demonstrate the usefulness of this platform technology by selectively pressuring a large shift in the spectral properties of the fluorescent protein eqFP615 into the highly stable and advanced optical imaging expediting fluorescent protein Amrose. The method is advantageous as it is time and cost effective and no prior knowledge of the outcome protein's structure is necessary. Amrose was evolved to have high excitation at 633 nm and excitation/emission into the far-red, which is optimal for whole-body and deep tissue imaging as we demonstrate in the zebrafish and mouse model. KW - Fluorescent protein KW - Quantum yield PY - 2014 DO - https://doi.org/10.1371/journal.pone.0107069 SN - 1932-6203 VL - 9 IS - 9 SP - e107069-1 EP - e107069-12 PB - PubMed Central AN - OPUS4-31976 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Flores, E. A1 - Idrees, F. A1 - Moussay, P. A1 - Viallon, J. A1 - Wielgosz, R. A1 - Fernández, T. A1 - Ramírez, S. A1 - Rojo, A. A1 - Shinji, U. A1 - Waldén, J. A1 - Sega, M. A1 - Sang-Hyub, O. A1 - Macé, T. A1 - Couret, C. A1 - Qiao, H. A1 - Smeulders, D. A1 - Guenther, F.R. A1 - Thorn, W.J. III A1 - Tshilongo, J. A1 - Ntsasa, N.G. A1 - Stovcík, V. A1 - Valková, M. A1 - Konopelko, L. A1 - Gromova, E. A1 - Nieuwenkamp, G. A1 - Wessel, R. M. A1 - Milton, M. A1 - Harling, A. A1 - Vargha, G. A1 - Tuma, Dirk A1 - Kohl, Anka A1 - Schulz, Gert T1 - Final report on international comparison CCQM-K74: Nitrogen dioxide, 10 µmol/mol JF - Metrologia N2 - There is a high international priority attached to activities which reduce NOx in the atmosphere. The current level of permitted emissions is typically between 50 µmol/mol and 100 µmol/mol, but lower values are expected in the future. Currently, ambient air quality monitoring regulations also require the measurement of NOx mole fractions as low as 0.2 µmol/mol. The production of accurate standards at these levels of mole fractions requires either dilution of a stable higher concentration gas standard or production by a dynamic technique, for example one based on permeation tubes. The CCQM-K74 key comparison was designed to evaluate the level of comparability of National Metrology Institutes' measurement capabilities and standards for nitrogen dioxide (NO2) at a nominal mole fraction of 10 µmol/mol. The measurements of this key comparison took place from June 2009 to May 2010. Seventeen laboratories took part in this comparison coordinated by the BIPM and VSL. The key comparison reference value was based on BIPM measurement results, and the standard measurement uncertainty of the reference value was 0.042 µmol/mol. This key comparison demonstrated that the results of the majority of the participants agreed within limits of ±3% relative to the reference value. The results of only one laboratory lay significantly outside these limits. Likewise this comparison made clear that a full interpretation of the results of the comparison needed to take into account the presence of nitric acid (in the range 100 nmol/mol to 350 nmol/mol) in the cylinders circulated as part of the comparison, as well as the possible presence of nitric acid in the primary standards used by participating laboratories. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCQM, according to the provisions of the CIPM Mutual Recognition Arrangement (MRA). DatesIssue 1A (Technical Supplement 2012) KW - Ringversuch KW - NO2 KW - Spurenverunreinigungen KW - Meßverfahren PY - 2012 DO - https://doi.org/10.1088/0026-1394/49/1A/08005 SN - 0026-1394 SN - 1681-7575 VL - 49 IS - 08005 SP - 1 EP - 117 PB - Inst. of Physics Publ. CY - Bristol AN - OPUS4-25927 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER -