TY - JOUR A1 - Ebel, Kenny A1 - Bald, Ilko T1 - Length and Energy Dependence of Low-Energy Electron-Induced Strand Breaks in Poly(A) DNA N2 - The DNA in living cells can be effectively damaged by high-energy radiation, which can lead to cell death. Through the ionization of water molecules, highly reactive secondary species such as low-energy electrons (LEEs) with the most probable energy around 10 eV are generated, which are able to induce DNA strand breaks via dissociative electron attachment. Absolute DNA strand break cross sections of specific DNA sequences can be efficiently determined using DNA origami nanostructures as platforms exposing the target sequences towards LEEs. In this paper, we systematically study the effect of the oligonucleotide length on the strand break cross section at various irradiation energies. The present work focuses on poly-adenine sequences (d(A4), d(A8), d(A12), d(A16), and d(A20)) irradiated with 5.0, 7.0, 8.4, and 10 eV electrons. Independent of the DNA length, the strand break cross section shows a maximum around 7.0 eV electron energy for all investigated oligonucleotides confirming that strand breakage occurs through the initial formation of negative ion resonances. When going from d(A4) to d(A16), the strand break cross section increases with oligonucleotide length, but only at 7.0 and 8.4 eV, i.e., close to the maximum of the negative ion resonance, the increase in the strand break cross section with the length is similar to the increase of an estimated geometrical cross section. For d(A20), a markedly lower DNA strand break cross section is observed for all electron energies, which is tentatively ascribed to a conformational change of the dA20 sequence. The results indicate that, although there is a general length dependence of strand break cross sections, individual nucleotides do not contribute independently of the absolute strand break cross section of the whole DNA strand. The absolute quantification of sequence specific strand breaks will help develop a more accurate molecular level understanding of radiation induced DNA damage, which can then be used for optimized risk estimates in cancer radiation therapy. KW - DNA origami KW - DNA radiation damage KW - DNA strand breaks KW - Low-energy electrons KW - Sequence dependence PY - 2020 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-503563 DO - https://doi.org/10.3390/ijms21010111 VL - 21 IS - 1 SP - 1 EP - 11 PB - MDPI CY - Basel, Switzerland AN - OPUS4-50356 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Schmidt, C. A1 - Schierack, P. A1 - Gerber, U. A1 - Schröder, C. A1 - Choi, Youngeun A1 - Bald, Ilko A1 - Lehmann, W. A1 - Rödiger, S. T1 - Streptavidin Homologues for Applications on Solid Surfaces at High Temperatures N2 - One of the most commonly used bonds between two biomolecules is the bond between biotin and streptavidin (SA) or streptavidin homologues (SAHs). A high dissociation constant and the consequent high-temperature stability even allows for its use in nucleic acid detection under polymerase chain reaction (PCR) conditions. There are a number of SAHs available, and for assay design, it is of great interest to determine as to which SAH will perform the best under assay conditions. Although there are numerous single studies on the characterization of SAHs in solution or selected solid phases, there is no systematic study comparing different SAHs for biomolecule-binding, hybridization, and PCR assays on solid phases. We compared streptavidin, core streptavidin, traptavidin, core traptavidin, neutravidin, and monomeric streptavidin on the surface of microbeads (10–15 μm in diameter) and designed multiplex microbead-based experiments and analyzed simultaneously the binding of biotinylated oligonucleotides and the hybridization of oligonucleotides to complementary capture probes. We also bound comparably large DNA origamis to capture probes on the microbead surface. We used a real-time fluorescence microscopy imaging platform, with which it is possible to subject samples to a programmable time and temperature profile and to record binding processes on the microbead surface depending on the time and temperature. With the exception of core traptavidin and monomeric streptavidin, all other SA/SAHs were suitable for our investigations. We found hybridization efficiencies close to 100% for streptavidin, core streptavidin, traptavidin, and neutravidin. These could all be considered equally suitable for hybridization, PCR applications, and melting point analysis. The SA/SAH–biotin bond was temperature-sensitive when the oligonucleotide was mono-biotinylated, with traptavidin being the most stable followed by streptavidin and neutravidin. Mono-biotinylated oligonucleotides can be used in experiments with temperatures up to 70 °C. When oligonucleotides were bis-biotinylated, all SA/SAH–biotin bonds had similar temperature stability under PCR conditions, even if they comprised a streptavidin variant with slower biotin dissociation and increased mechanostability. KW - Biopolymers Probes KW - Hybridization KW - Fluorescence KW - Genetics PY - 2020 DO - https://doi.org/10.1021/acs.langmuir.9b02339 VL - 36 IS - 2 SP - 628 EP - 636 PB - American Chemical Society Publication CY - Washington AN - OPUS4-50357 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Marques, T. S. A1 - Schürmann, Robin A1 - Ebel, Kenny A1 - Heck, C. A1 - Smialek, M. A1 - Eden, Sam A1 - Mason, N. A1 - Bald, Ilko T1 - Kinetics of molecular decomposition under irradiation of gold nanoparticles with nanosecond laser pulses-A 5-Bromouracil case study N2 - Laser illuminated gold nanoparticles (AuNPs) efficiently absorb light and heat up the surrounding medium, leading to versatile applications ranging from plasmonic catalysis to cancer photothermal therapy. Therefore, an in-depth understanding of the thermal, optical, and electron induced reaction pathways is required. Here, the electrophilic DNA nucleobase analog 5-Bromouracil (BrU) has been used as a model compound to study its decomposition in the vicinity of AuNPs illuminated with intense ns laser pulses under various conditions. The plasmonic response of the AuNPs and the concentration of BrU and resulting photoproducts have been tracked by ultraviolet and visible (UV–Vis) spectroscopy as a function of the irradiation time. A kinetic model has been developed to determine the reaction rates of two parallel fragmentation pathways of BrU, and their dependency on laser fluence and adsorption on the AuNP have been evaluated. In addition, the size and the electric field enhancement of the decomposed AuNPs have been determined by atomic force microscopy and finite domain time difference calculations, respectively. A minor influence of the direct photoreaction and a strong effect of the heating of the AuNPs have been revealed. However, due to the size reduction of the irradiated AuNPs, a trade-off between laser fluence and plasmonic response of the AuNPs has been observed. Hence, the decomposition of the AuNPs might be limiting the achievable temperatures under irradiation with several laser pulses. These findings need to be considered for an efficient design of catalytic plasmonic systems. KW - Kinetics KW - Gold nanoparticles KW - 5-Bromouracil PY - 2020 DO - https://doi.org/10.1063/1.5137898 VL - 152 IS - 12 SP - 24712 EP - 24712 PB - AIP Publishing AN - OPUS4-50787 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Schürmann, Robin A1 - Bald, Ilko T1 - Decomposition of DNA nucleobases by laser irradiation of gold nanoparticles monitored by surface-enhanced Raman scattering N2 - Different approaches have been proposed to treat cancer cells using gold nanoparticles (AuNPs) in combination with radiation ranging from infrared lasers to high-energy ion beams. Here we study the decomposition of the DNA/RNA nucleobases thymine (T) and uracil (U) and the well-known radiosensitizer 5-bromouracil (BrU) in close vicinity to AuNPs, which are irradiated with a nanosecond pulsed laser (532 nm) matching the surface plasmon resonance of the AuNPs. The induced damage of nucleobases is analyzed by UV−vis Absorption spectroscopy and surface-enhanced Raman scattering (SERS). A clear DNA damage is observed upon laser irradiation. SERS spectra indicate the fragmentation of the aromatic ring system of T and U as the dominant form of damage, whereas with BrU mainly the cleavage of the Br−C bond and formation of Br− ions is observed. This is accompanied by a partial transformation of BrU into U. The observed damage is at least partly ascribed to the intermediate formation of lowenergy electrons from the laser-excited AuNPs and subsequent dissociative electron attachment to T, U, and BrU. These reactions represent basic DNA damage pathways occurring on the one hand in plasmon-assisted cancer therapy and on the other hand in conventional cancer radiation therapy using AuNPs as sensitizing agents. KW - Gold nanoparticles KW - SERS KW - Electrons KW - DNA damage KW - Gold-Nanopartikel KW - Elektronen KW - DNA-Schädigung PY - 2016 DO - https://doi.org/10.1021/acs.jpcc.5b10564 VL - 120 IS - 5 SP - 3001 EP - 3009 PB - AMER CHEMICAL SOC AN - OPUS4-35673 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Prinz, J. A1 - Heck, Christian A1 - Ellerik, L. A1 - Merk, V. A1 - Bald, Ilko T1 - DNA origami based Au–Ag-core–shell nanoparticle dimers with single-molecule SERS sensitivity N2 - DNA origami nanostructures are a versatile tool to arrange metal nanostructures and other chemical entities with nanometer precision. In this way gold nanoparticle dimers with defined distance can be constructed, which can be exploited as novel substrates for surface enhanced Raman scattering (SERS). We have optimized the size, composition and arrangement of Au/Ag nanoparticles to create intense SERS hot spots, with Raman enhancement up to 10^10, which is sufficient to detect single molecules by Raman scattering. This is demonstrated using single dye molecules (TAMRA and Cy3) placed into the center of the nanoparticle dimers. In conjunction with the DNA origami nanostructures novel SERS substrates are created, which can in the future be applied to the SERS analysis of more complex biomolecular targets, whose position and conformation within the SERS hot spot can be precisely controlled. KW - single molecule spectroscopy KW - DNA origami KW - SERS KW - gold nanoparticles KW - silver nanoparticles PY - 2016 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-358761 UR - http://pubs.rsc.org/en/content/articlelanding/2016/nr/c5nr08674d#!divAbstract DO - https://doi.org/10.1039/C5NR08674D SP - 5612 EP - 5620 PB - Royal Society of Chemistry CY - Cambridge, England AN - OPUS4-35876 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Olejko, Lydia A1 - Cywinski, P. A1 - Bald, Ilko T1 - An ion-controlled four-color fluorescent telomeric switch on DNA origami structures N2 - The folding of single-stranded telomeric DNA into guanine (G) quadruplexes is a conformational change that plays a major role in sensing and drug targeting. The telomeric DNA can be placed on DNA origami nanostructures to make the folding process extremely selective for K+ ions even in the presence of high Na+ concentrations. Here, we demonstrate that the K+-selective G-quadruplex formation is reversible when using a cryptand to remove K+ from the G-quadruplex. We present a full characterization of the reversible switching between single-stranded telomeric DNA and G-quadruplex structures using Förster resonance energy transfer (FRET) between the dyes fluorescein (FAM) and cyanine3 (Cy3). When attached to the DNA origami platform, the G-quadruplex switch can be incorporated into more complex photonic networks, which is demonstrated for a three-color and a four-color FRET cascade from FAM over Cy3 and Cy5 to IRDye700 with G-quadruplex-Cy3 acting as a switchable transmitter. KW - DNA origami KW - FRET KW - Photonic wire KW - G quadruplex PY - 2016 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-362560 DO - https://doi.org/10.1039/C6NR00119J SN - 2040-3364 SN - 2040-3372 VL - 8 IS - 19 SP - 10339 EP - 10347 PB - Royal Soc Chemistry CY - Cambridge, UK AN - OPUS4-36256 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Tasior, M. A1 - Bald, Ilko A1 - Deperasinska, I. A1 - Cywinski, P.J. A1 - Gryko, D.T. T1 - An internal charge transfer-dependent solvent effect in V-shaped azacyanines N2 - New V-shaped non-centrosymmetric dyes, possessing a strongly electron-deficient azacyanine core, have been synthesized based on a straightforward two-step approach. The key step in this synthesis involves palladium-catalysed cross-coupling of dibromo-N,N'-methylene-2,2'-azapyridinocyanines with arylacetylenes. The resulting strongly polarized π-expanded heterocycles exhibit green to orange fluorescence and they strongly respond to changes in solvent polarity. We demonstrate that differently electron-donating peripheral groups have a significant influence on the internal charge transfer, hence on the solvent effect and fluorescence quantum yield. TD-DFT calculations confirm that, in contrast to the previously studied bis(styryl)azacyanines, the proximity of S1 and T2 states calculated for compounds bearing two 4-N,N-dimethylaminophenylethynyl moieties establishes good conditions for efficient intersystem crossing and is responsible for its low fluorescence quantum yield. Non-linear properties have also been determined for new azacyanines and the results show that depending on peripheral groups, the synthesized dyes exhibit small to large two-photon absorption cross sections reaching 4000 GM. KW - Fluorescence spectroscopy KW - Dyes KW - Solvent effect PY - 2015 DO - https://doi.org/10.1039/c5ob01633a SN - 1477-0520 SN - 1477-0539 VL - 13 IS - 48 SP - 11714 EP - 11720 PB - RSC CY - Cambridge AN - OPUS4-35194 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Meiling, T. A1 - Cywinski, P. A1 - Bald, Ilko T1 - White carbon: Fluorescent carbon nanoparticles with tunable quantum yield in a reproducible green synthesis N2 - In this study, a new reliable, economic, and environmentally-friendly one-step synthesis is established to obtain carbon nanodots (CNDs) with well-defined and reproducible photoluminescence (PL) properties via the microwave-assisted hydrothermal treatment of starch and Tris-acetate-EDTA (TAE) buffer as carbon sources. Three kinds of CNDs are prepared using different sets of above mentioned starting materials. The as-synthesized CNDs: C-CND (starch only), N-CND 1 (starch in TAE) and N-CND 2 (TAE only) exhibit highly homogenous PL and are ready to use without need for further purification. The CNDs are stable over a long period of time (>1 year) either in solution or as freeze-dried powder. Depending on starting material, CNDs with PL quantum yield (PLQY) ranging from less than 1% up to 28% are obtained. The influence of the precursor concentration, reaction time and type of additives on the optical properties (UV-Vis absorption, PL emission spectrum and PLQY) is carefully investigated, providing insight into the chemical processes that occur during CND formation. Remarkably, upon freeze-drying the initially brown CND-solution turns into a non-fluorescent white/slightly Brown powder which recovers PL in aqueous solution and can potentially be applied as fluorescent marker in bio-imaging, as a reduction agent or as a photocatalyst. KW - Carbon dots KW - Quantum yield KW - Fluorescence KW - Nanoparticles PY - 2016 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-367204 DO - https://doi.org/10.1038/srep28557 VL - 6 SP - Article 28557, 1 EP - 9 PB - Nature Publishing Group AN - OPUS4-36720 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Prinz, J. A1 - Matkovic, A. A1 - Pesic, J. A1 - Gajic, R. A1 - Bald, Ilko T1 - Hybrid structures for surface-enhanced Raman scattering: DNA origami/gold nanoparticle dimer/graphene N2 - A combination of three innovative materials within one hybrid structure to explore the synergistic interaction of their individual properties is presented. The unique electronic, mechanical, and thermal properties of graphene are combined with the plasmonic properties of gold nanoparticle (AuNP) dimers, which are assembled using DNA origami nanostructures. This novel hybrid structure is characterized by means of correlated atomic force microscopy and surface-enhanced Raman scattering (SERS). It is demonstrated that strong interactions between graphene and AuNPs result in superior SERS performance of the hybrid structure compared to their individual components. This is particularly evident in efficient fluorescence quenching, reduced background, and a decrease of the photobleaching rate up to one order of magnitude. The versatility of DNA origami structures to serve as interface for complex and precise arrangements of nanoparticles and other functional entities provides the basis to further exploit the potential of the here presented DNA origami–AuNP dimer–graphene hybrid structures. KW - DNA origami KW - Gold nanoparticles KW - Graphene KW - Surface-enhanced Raman scattering PY - 2016 UR - http://onlinelibrary.wiley.com/doi/10.1002/smll.201601908/full DO - https://doi.org/10.1002/smll.201601908 SN - 1613-6810 SN - 1613-6829 VL - 12 IS - 39 SP - 5458 EP - 5467 AN - OPUS4-38369 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Rackwitz, Jenny A1 - Bald, Ilko T1 - Low‐energy electron‐induced strand breaks in telomere‐derived DNA sequences—influence of DNA sequence and topology N2 - During cancer radiation therapy high‐energy radiation is used to reduce tumour tissue. The irradiation produces a shower of secondary low‐energy (<20 eV) electrons, which are able to damage DNA very efficiently by dissociative electron attachment. Recently, it was suggested that low‐energy electron‐induced DNA strand breaks strongly depend on the specific DNA sequence with a high sensitivity of G‐rich sequences. Here, we use DNA origami platforms to expose G‐rich telomere sequences to low‐energy (8.8 eV) electrons to determine absolute cross sections for strand breakage and to study the influence of sequence modifications and topology of telomeric DNA on the strand breakage. We find that the telomeric DNA 5′‐(TTA GGG)2 is more sensitive to low‐energy electrons than an intermixed sequence 5′‐(TGT GTG A)2 confirming the unique electronic properties resulting from G‐stacking. With increasing length of the oligonucleotide (i.e., going from 5′‐(GGG ATT)2 to 5′‐(GGG ATT)4), both the variety of topology and the electron‐induced strand break cross sections increase. Addition of K+ ions decreases the strand break cross section for all sequences that are able to fold G‐quadruplexes or G‐intermediates, whereas the strand break cross section for the intermixed sequence remains unchanged. These results indicate that telomeric DNA is rather sensitive towards low‐energy electron‐induced strand breakage suggesting significant telomere shortening that can also occur during cancer radiation therapy. KW - DNA radiation damage KW - Telomere KW - DNA origami KW - Electron PY - 2018 DO - https://doi.org/10.1002/chem.201705889 SN - 1521-3765 SN - 0947-6539 VL - 24 IS - 18 SP - 4680 EP - 4688 PB - Wiley AN - OPUS4-44702 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Ribar, A. A1 - Huber, S. E. A1 - Smiałek, M. A. A1 - Tanzer, K. A1 - Neustetter, M. A1 - Schürmann, Robin A1 - Bald, Ilko A1 - Denifl, S. T1 - Hydroperoxyl radical and formic acid formation from common DNA stabilizers upon low energy electron attachment N2 - 2-Amino-2-(hydroxymethyl)-1,3-propanediol (TRIS) and ethylene-diaminetetraacetic acid (EDTA) are key components of biological buffers and are frequently used as DNA stabilizers in irradiation studies. Such surface or liquid phase studies are done with the aim to understand the fundamental mechanisms of DNA radiation damage and to improve cancer radiotherapy. When ionizing radiation is used, abundant secondary electrons are formed during the irradiation process, which are able to attach to the molecular compounds present on the surface. In the present study we experimentally investigate low energy electron attachment to TRIS and methyliminodiacetic acid (MIDA), an analogue of EDTA, supported by quantum chemical calculations. The most prominent dissociation channel for TRIS is through hydroperoxyl radical formation, whereas the dissociation of MIDA results in the formation of formic and acetic acid. These compounds are well-known to cause DNA modifications, like strand breaks. The present results indicate that buffer compounds may not have an exclusive protecting effect on DNA as suggested previously. KW - DEA KW - DNA KW - Low energy electrons KW - Mass spectrometry PY - 2018 UR - http://pubs.rsc.org/en/content/articlepdf/2018/cp/c7cp07697e DO - https://doi.org/10.1039/c7cp07697e VL - 20 IS - 8 SP - 5578 EP - 5585 PB - Royal Society of Chemistry AN - OPUS4-44703 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Abdoul-Carime, H. A1 - Bald, Ilko A1 - Illenberger, E. A1 - Kopyra, J. T1 - Selective synthesis of ethylene and acetylene from dimethyl sulfide cold films controlled by slow electrons N2 - One of the major challenges in chemical synthesis is to trigger and control a specific reaction route leading to a specific final product, while side products are avoided. Methodologies based on resonant processes at the molecular level, for example, photochemistry, offer the possibility of inducing selective reactions. Electrons at energies below the molecular ionization potential (<10 eV) are known to dissociate molecules via resonant processes with higher cross sections and specificity than photons. Here we show that even subexcitation electrons with energies as low as 1 eV produce ethylene and acetylene from dimethyl sulfide in competing reactions. However, the production of ethylene can specifically be targeted by controlling the energy of electrons (∼3 to 4 eV). Finally, pure ethylene is selectively desorbed by heating the substrate from 90 to 105 K. Beyond the synthesis of these versatile hydrocarbons for various industrial applications from a biogenic sulfur compound, our findings demonstrate the feasibility of electron-induced selective chemistry applicable on the nanoscale. KW - Low-energy electrons KW - Dissociative electron attachment KW - Green chemistry PY - 2018 DO - https://doi.org/10.1021/acs.jpcc.8b07377 SN - 1932-7447 VL - 122 IS - 42 SP - 24137 EP - 24142 PB - ACS AN - OPUS4-46679 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Rühlmann, Madlen A1 - Büchele, Dominique A1 - Ostermann, Markus A1 - Bald, Ilko A1 - Schmid, Thomas T1 - Challenges in the quantification of nutrients in soils using laser-induced breakdown spectroscopy – A case study with calcium N2 - The quantification of the elemental content in soils with laser-induced breakdown spectroscopy (LIBS) is challenging because of matrix effects strongly influencing the plasma formation and LIBS signal. Furthermore, soil heterogeneity at the micrometre scale can affect the accuracy of analytical results. In this paper, the impact of univariate and multivariate data evaluation approaches on the quantification of nutrients in soil is discussed. Exemplarily, results for calcium are shown, which reflect trends also observed for other elements like magnesium, silicon and iron. For the calibration models, 16 certified reference soils were used. With univariate and multivariate approaches, the calcium mass fractions in 60 soils from different testing grounds in Germany were calculated. The latter approach consisted of a principal component analysis (PCA) of adequately pre-treated data for classification and identification of outliers, followed by partial least squares regression (PLSR) for quantification. For validation, the soils were also characterised with inductively coupled plasma optical emission spectroscopy (ICP OES) and X-ray fluorescence (XRF) analysis. Deviations between the LIBS quantification results and the reference analytical results are discussed. KW - Laser-induced breakdown spectroscopy (LIBS) KW - Soil KW - Multivariate data analysis KW - Principal component analysis (PCA) KW - Partial least squares regression (PLSR) PY - 2018 DO - https://doi.org/10.1016/j.sab.2018.05.003 VL - 146 SP - 115 EP - 121 PB - Elsevier B.V. AN - OPUS4-45070 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Meiling, T. T. A1 - Schürmann, Robin A1 - Vogel, Stefanie A1 - Ebel, Kenny A1 - Nicolas, C. A1 - Milosavljević, A. R. A1 - Bald, Ilko T1 - Photophysics and chemistry of nitrogen-doped carbon nanodots with high photoluminescence quantum yield N2 - Fluorescent carbon nanodots (CNDs) are very promising nanomaterials for a broad range of applications because of their high photostability, presumed selective luminescence, and low cost at which they can be produced. In this respect, CNDs are superior to well-established semiconductor quantum dots and organic dyes. However, reported synthesis protocols for CNDs typically lead to low photoluminescence quantum yield (PLQY) and low reproducibility, resulting in a poor understanding of the CND chemistry and photophysics. Here, we report a one-step synthesis of nitrogen-doped carbon nanodots (N-CNDs) from various carboxylic acids, Tris, and ethylenediaminetetraacetic acid resulting in high PLQY of up to 90%. The reaction conditions in terms of starting materials, temperature, and reaction time are carefully optimized and their influence on the photophysical properties is characterized. We find that citric acid-derived N-CNDs can result in a very high PLQY of 90%, but they do not Show selective luminescence. By contrast, acetic acid-derived N-CNDs show selective luminescence but a PLQY of 50%. The chemical composition of the surface and core of these two selected N-CND types is characterized among others by high-Resolution synchrotron X-ray photoelectron spectroscopy using single isolated N-CND clusters. The results indicate that photoexcitation occurs in the N-CND core, whereas the emission properties are determined by the N-CND surface groups. KW - Carbon nanodots KW - Fluorescence KW - Synchrotron XPS PY - 2018 DO - https://doi.org/10.1021/acs.jpcc.8b00748 SN - 1932-7447 VL - 122 IS - 18 SP - 10217 EP - 10230 PB - American Chemical Society CY - Washington, DC AN - OPUS4-45426 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Schürmann, Robin A1 - Vogel, Stefanie A1 - Ebel, Kenny A1 - Bald, Ilko T1 - The physico-chemical basis of DNA radiosensitization: Implications for cancer radiation therapy N2 - High-energy radiation is used in combination with radiosensitizing therapeutics to treat cancer. The most common radiosensitizers are halogenatednucleo-sides and cisplatin derivatives, and recently also metal nanoparticles have been suggested as potentialradiosensitizing agents. The radiosensitizingaction of these compounds can at least partly be ascribed to an enhancedreactivity towards secondary low-energy electrons generated along the radiation track of the high-energyprimary radiation, or to an additional emission of secondary reactive electrons close to the tumor tissue. This is referred to as physico-chem ical radiosensitization. In this Conceptarticle we presentcurrent experimental methodsused to study fundamentalprocesses of physico-chemical radiosensitization and discuss the most relevant classes of radiosensitizers. Open questions in the current discussions are identified and future directions outlined, which can lead to optimized treatment protocols or even novel therapeuticconcepts. KW - DNA KW - Radiosensitization KW - Radiation damage KW - Low energy electrons PY - 2018 DO - https://doi.org/10.1002/chem.201800804 SN - 1521-3765 SN - 0947-6539 VL - 24 IS - 41 SP - 10271 EP - 10279 PB - WILEY AN - OPUS4-45742 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Heck, Christian A1 - Kanehira, Y. A1 - Kneipp, Janina A1 - Bald, Ilko T1 - Placement of single proteins within the SERS hot spots of self-assembled silver nanolenses N2 - This study demonstrates the bottom-up synthesis of silver nanolenses.Arobust coating protocol enabled the functionalization of differently sized silver nanoparticles with DNAsingle strands of orthogonal sequence.Coated particles 10 nm, 20 nm, and 60 nm in diameter were self-assembled by DNAorigami scaffolds to form silver nanolenses.Single molecules of the protein streptavidin were selectively placed in the gap of highest electric field enhancement. Streptavidin labelled with alkyne groups served as model analyte in surface- enhanced Raman scattering (SERS) experiments.Bycorre- lated Raman mapping and atomic force microscopy, SERS signals of the alkyne labels of asingle streptavidin molecule, from asingle silver nanolens,were detected. The discrete,self- similar aggregates of solid silver nanoparticles are promising for plasmonic applications. KW - DNA origami KW - Surface enhanced Raman scattering KW - Protein KW - Single molecule KW - Nanotechnology PY - 2018 DO - https://doi.org/10.1002/anie.201801748 SN - 1433-7851 VL - 57 IS - 25 SP - 7444 EP - 7447 PB - WILEY AN - OPUS4-45743 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Heck, Christian A1 - Kanehira, Yuya A1 - Kneipp, Janina A1 - Bald, Ilko T1 - Platzierung einzelner Proteine in den SERS-Hot-Spots selbstorganisierte Silbernanolinsen N2 - Diese Studie demonstriert die Bottom-up-Synthese von Silbernanolinsen. Ein robustes Beschichtungsprotokoll ermçglichte die Funktionalisierung unterschiedlich großer Silbernanopartikel mit einzelstr-ngiger DNAunterschiedlicher Sequenz. Derartig beschichtete Partikel mit Durchmessern von 10 nm, 20 nm und 60 nm wurden mithilfe von DNA-Origami- Gergsten zu Silbernanolinsen angeordnet. Ein einzelnes Mo- lekgldes Proteins Streptavidin ist in demjenigen Spalt zwi- schenden Partikeln immobilisiert worden, der die hçchste Feldverst-rkung zur Verfggung stellt. Streptavidin war dabei mit Alkin-Gruppen modifiziert und fungierte als Modellanalyt in Experimenten zur oberfl-chenverst-rkten Raman-Streuung (SERS). Korrelierte Raman- und Rasterkraftmikroskopie- Messungen ermçglichten die Aufnahme von SERS-Signalen der Alkingruppen eines einzelnen Streptavidins,von einer einzelnen Silbernanolinse.Diese diskreten, selbst-hnlichen Silbernanopartikelaggregate versprechen vielf-ltige Anwen- dungen im Feld der Plasmonik KW - DNA Origami KW - Oberflächen verstärkte Raman Streuung KW - Proteine KW - Einzelmolekülspektroskopie KW - Nanotechnologie PY - 2018 DO - https://doi.org/10.1002/ange.201801748 SN - 1521-3757 SN - 0044-8249 VL - 130 IS - 25 SP - 7566 EP - 7569 PB - WILEY AN - OPUS4-45744 LA - deu AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Olejko, L. A1 - Cywinski, P.J. A1 - Bald, Ilko T1 - Ion-selective formation of a guanine quadruplex on DNA origami structures N2 - DNA origami nanostructures are a versatile tool that can be used to arrange functionalities with high local control to study molecular processes at a single-molecule level. Here, we demonstrate that DNA origami substrates can be used to suppress the formation of specific guanine (G) quadruplex structures from telomeric DNA. The folding of telomeres into G-quadruplex structures in the presence of monovalent cations (e.g. Na+ and K+) is currently used for the detection of K+ ions, however, with insufficient selectivity towards Na+. By means of FRET between two suitable dyes attached to the 3'- and 5'-ends of telomeric DNA we demonstrate that the formation of G-quadruplexes on DNA origami templates in the presence of sodium ions is suppressed due to steric hindrance. Hence, telomeric DNA attached to DNA origami structures represents a highly sensitive and selective detection tool for potassium ions even in the presence of high concentrations of sodium ions. KW - DNA nanotechnology KW - FRET KW - G-quadruplexes KW - Nanostructures KW - Self-assembly KW - DNA origami KW - Fluorescence spectroscopy KW - Sensing PY - 2014 UR - http://onlinelibrary.wiley.com/doi/10.1002/anie.201409278/full DO - https://doi.org/10.1002/anie.201409278 SN - 1433-7851 SN - 1521-3773 SN - 0570-0833 VL - 53 SP - 1 EP - 6 PB - Wiley-VCH CY - Weinheim AN - OPUS4-32196 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Bald, Ilko T1 - DNA origami substrates for highly-sensitive surface-enhanced Raman spectroscopy T2 - ICORS 2014 CY - Jena DA - 2014-08-10 PY - 2014 AN - OPUS4-32187 LA - deu AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Bald, Ilko T1 - Sequence-Dependence of electron-induced DNA strand breakage revealed by DNA nanoarrays T2 - NanoIBCT 2014 CY - Boppard DA - 2014-10-27 PY - 2014 AN - OPUS4-32188 LA - deu AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Bald, Ilko T1 - Molecular Processes on DNA origami nanostructures studied with atomic force microscopy and optical spectroscopy T2 - Bunsentagung 2014 CY - Hamburg DA - 2014-05-29 PY - 2014 AN - OPUS4-32372 LA - deu AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Bald, Ilko T1 - Analysis of DNA origami nanostructures by surface-enhance Raman spectroscopy and atomic force microscopy T2 - Witec Workshop 2014 CY - Potsdam, Germany DA - 2014-03-13 PY - 2014 AN - OPUS4-32373 LA - deu AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Bald, Ilko T1 - DNA origami substrates for highly-sensitve surface-enhanced Raman spectroscopy T2 - ICORS 2014 CY - Jena DA - 2014-08-10 PY - 2014 AN - OPUS4-32374 LA - deu AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Bald, Ilko T1 - Low-energy electron-induced bond cleavage studied in DNA at a single-molecule level T2 - SPIG 2014 CY - Belgrad (Serbien) DA - 2014-08-26 PY - 2014 AN - OPUS4-32375 LA - deu AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Bald, Ilko T1 - Sequence-Dependence on electron-induced DNA strand breakage revealed by DNA nanoarrays T2 - NanoIBCT 2014 CY - Boppard DA - 2014-10-27 PY - 2014 AN - OPUS4-32376 LA - deu AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Bald, Ilko T1 - DNA-Origami-Nanostrukturen als neuartige Substrate für die oberflächenverstärkte Raman-Spektroskopie T2 - ANAKON 2013 CY - Essen, Germany DA - 2013-03-04 PY - 2013 AN - OPUS4-29808 LA - deu AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Bald, Ilko T1 - Electron-induced reactions in complex DNA T2 - DEAclub 2013 CY - Trieste, Italy DA - 2013-09-16 PY - 2013 AN - OPUS4-29809 LA - deu AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - CONF A1 - Bald, Ilko T1 - Probing Electron-Induced Bond Cleavage at the Single-Molecule Level Using DNS Origami Templates T2 - NanoIBCT2013 CY - Sopot, Poland DA - 2013-05-20 PY - 2013 AN - OPUS4-29810 LA - deu AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Piecarczyk, A. A1 - Bald, Ilko A1 - Flossadóttir, H.D. A1 - Ómarsson, B. A1 - Lafosse, A. A1 - Ingólfsson, O. T1 - Influence of metal ion complexation on the metastable fragmentation of DNA hexamers N2 - Here, we study the metastable decay of 5'-d(TTGCTT) in the presence of 0–6 alkaline metal ions (Li+, Na+, K+, Rb+) and 0–3 alkaline earth metal ions (Mg2+ and Ca2+), which replace the corresponding number of protons in the oligonucleotide. We find that all ions studied here stabilize the oligonucleotide with respect to simple 3'-C–O backbone cleavage, but at the same time these metal ions promote a central oligonucleotide deletion accompanied by a concomitant recombination of the terminal d(TT) groups. We find that the quenching of the 3'-C–O backbone cleavage is not ion specific, since it is due to the removal of the phosphate protons upon replacement with the respective metal ions. The central nucleotide deletion competes with the 3'-C–O backbone cleavage channels and is thus promoted through the replacement of the exchangeable protons against metal ions. However, with increasing positive charge density of the metal ions the yield of the central nucleotide deletion further increases. We attribute this effect to the necessity of sufficient proximity of the terminal d(TT) group to allow for their recombination on this reaction path. Hence, the formation of a reactive conformer is mediated by the metal ions. KW - DNA oligonucleotides KW - Matrix-assisted laser desorption/ionization KW - Metastable decay KW - Mass spectrometry PY - 2014 DO - https://doi.org/10.1140/epjd/e2014-40838-7 SN - 1434-6060 VL - 68 SP - 146, 1 EP - 7 PB - Springer CY - Berlin AN - OPUS4-31155 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Prinz, J. A1 - Schreiber, B. A1 - Olejko, L. A1 - Oertel, J. A1 - Rackwitz, J. A1 - Keller, A. A1 - Bald, Ilko T1 - DNA origami substrates for highly sensitive surface-enhanced Raman scattering N2 - DNA nanotechnology holds great promise for the fabrication of novel plasmonic nanostructures and the potential to carry out single-molecule measurements using optical spectroscopy. Here, we demonstrate for the first time that DNA origami nanostructures can be exploited as substrates for surface-enhanced Raman scattering (SERS). Gold nanoparticles (AuNPs) have been arranged into dimers to create intense Raman scattering hot spots in the interparticle gaps. AuNPs (15 nm) covered with TAMRA-modified DNA have been placed at a nominal distance of 25 nm to demonstrate the formation of Raman hot spots. To control the plasmonic coupling between the nanoparticles and thus the field enhancement in the hot spot, the size of AuNPs has been varied from 5 to 28 nm by electroless Au deposition. By the precise positioning of a specific number of TAMRA molecules in these hot spots, SERS with the highest sensitivity down to the few-molecule level is obtained. KW - DANN Origami KW - Surface-enhanced Raman scattering KW - Nanoparticles KW - TAMRA PY - 2013 DO - https://doi.org/10.1021/jz402076b SN - 1948-7185 VL - 4 IS - 23 SP - 4140 EP - 4145 PB - ACS CY - Washington, DC AN - OPUS4-29907 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Schürmann, Robin A1 - Bald, Ilko T1 - Effect of adsorption kinetics on dissociation of DNA-nucleobases on gold nanoparticles under pulsed laser illumination N2 - Photothermal therapy is a novel approach to destroy cancer cells by an increase of temperature due to laser illumination of gold nanoparticles (GNPs) that are incorporated into the cells. Here, we study the decomposition of DNA nucleobases via irradiation of gold nanoparticles with ns-laser pulses. The kinetics of the adsorption and decomposition process is described by a theoretical model based on the Langmuir assumptions and correlated with experimentally determined reaction rates revealing a strong influence of the nucleobase specific adsorption. Beside the four nucleobases, their brominated analogs, which are potential radiosensitizers in cancer therapy, are also investigated and show a significant modification of the decomposition rates. The fastest decomposition rates are observed for adenine, 8-bromoadenine, 8-bromoguanine and 5-bromocytosine. These results are in good agreement with the relative adsorption rates that are determined from the aggregation kinetics of the GNPs taking the effect of an inhomogeneous surface into account. For adenine and its brominated analog, the decomposition products are further analyzed by surface enhanced Raman scattering (SERS) indicating a strong fragmentation of the molecules into their smallest subunits. KW - Gold nanoparticle KW - DNA damage KW - Kinetics KW - Pulsed Laser KW - Physical Chemistry PY - 2017 DO - https://doi.org/10.1039/c6cp08433h SN - 1463-9076 SN - 1463-9084 VL - 19 IS - 17 SP - 10796 EP - 10803 AN - OPUS4-40070 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Rackwitz, J. A1 - Rankovic, M. A1 - Milosavljevic, A. A1 - Bald, Ilko T1 - A novel setup for the determination of absolute cross sections for low-energy electron induced strand breaks in oligonucleotides – The effect of the radiosensitizer 5-fluorouracil N2 - Low-energy electrons (LEEs) play an important role in DNA radiation damage. Here we present a method to quantify LEE induced strand breakage in well-defined oligonucleotide single strands in terms of absolute cross sections. An LEE irradiation setup covering electron energies <500 eV is constructed and optimized to irradiate DNA origami triangles carrying well-defined oligonucleotide target strands. Measurements are presented for 10.0 and 5.5 eV for different oligonucleotide targets. The determination of absolute strand break cross sections is performed by atomic force microscopy analysis. An accurate fluence determination ensures small margins of error of the determined absolute single strand break cross sections σSSB. In this way, the influence of sequence modification with the radiosensitive 5-Fluorouracil (5FU) is studied using an absolute and relative data analysis. We demonstrate an increase in the strand break yields of 5FU containing oligonucleotides by a factor of 1.5 to 1.6 compared with non-modified oligonucleotide sequences when irradiated with 10 eV electrons. KW - DNA origami KW - DNA radiation damage KW - Radiosensitizer KW - AFM KW - Fluorouracil PY - 2017 UR - http://epjd.epj.org/articles/epjd/abs/2017/02/d160608/d160608.html DO - https://doi.org/10.1140/epjd/e2016-70608-4 VL - 71 SP - 32 PB - Springer CY - New York, NY, USA AN - OPUS4-39643 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Schürmann, Robin A1 - Bald, Ilko T1 - Real-time monitoring of plasmon induced dissociative electron transfer to the potential DNA radiosensitizer 8-bromoadenine N2 - The excitation of localized surface plasmons in noble metal nanoparticles (NPs) results in different nanoscale effects such as electric field enhancement, the generation of hot electrons and a temperature increase close to the NP surface. These effects are typically exploited in diverse fields such as surface-enhanced Raman scattering (SERS), NP catalysis and photothermal therapy (PTT). Halogenated nucleobases are applied as radiosensitizers in conventional radiation cancer therapy due to their high reactivity towards secondary electrons. Here, we use SERS to study the transformation of 8-bromoadenine (8BrA) into adenine on the surface of Au and AgNPs upon irradiation with a low-power continuous wave laser at 532, 633 and 785 nm, respectively. The dissociation of 8BrA is ascribed to a hot-electron transfer reaction and the underlying kinetics are carefully explored. The reaction proceeds within seconds or even milliseconds. Similar dissociation reactions might also occur with other electrophilic molecules, which must be considered in the interpretation of respective SERS spectra. Furthermore, we suggest that hot-electron transfer induced dissociation of radiosensitizers such as 8BrA can be applied in the future in PTT to enhance the damage of tumor tissue upon irradiation. KW - SERS KW - Nanoparticles KW - Hot electrons KW - Bromoadenine KW - Catalysis PY - 2017 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-396469 DO - https://doi.org/10.1039/C6NR08695K SN - 2040-3364 SN - 2040-3372 VL - 9 IS - 5 SP - 1951 EP - 1955 PB - RSC AN - OPUS4-39646 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Rackwitz, J. A1 - Kopyra, J. A1 - Dabkowska, I. A1 - Ebel, K. A1 - Rankovic, M. A1 - Milosavljevic, A. R. A1 - Bald, Ilko T1 - Sensitizing DNAtowards low-energy electrons with 2-fluoroadenine N2 - 2-Fluoroadenine (2FA) is a therapeutic agent, which is suggested for application in cancer radiotherapy. The molecular mechanism of DNA radiation damage can be ascribed to a significant extent to the action of low-energy (<20 eV) electrons (LEEs), which damage DNA by dissociative electron attachment. LEE induced reactions in 2FA are characterized both isolated in the gas phase and in the condensed phase when it is incorporated into DNA. Information about negative ion resonances and anion-mediated fragmentation reactions is combined with an absolute quantification of DNA strand breaks in 2FA-containing oligonucleotides upon irradiation with LEEs. The incorporation of 2FA into DNA results in an enhanced strand breakage. The strand-break cross sections are clearly energy dependent, whereas the strand-break enhancements by 2FA at 5.5, 10, and 15 eV are very similar. Thus, 2FA can be considered an effective radiosensitizer operative at a wide range of electron energies. KW - Ab initio calculations KW - Dissociative electron attachment KW - DNA origami KW - DNA radiation damage KW - Fludarabine PY - 2016 UR - http://onlinelibrary.wiley.com/doi/10.1002/anie.201603464/full DO - https://doi.org/10.1002/anie.201603464 SN - 1433-7851 SN - 1521-3773 VL - 55 IS - 35 SP - 10248 EP - 10252 AN - OPUS4-37372 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Heck, Christian A1 - Prinz, Julia A1 - Dathe, A. A1 - Merck, V. A1 - Stranik, O. A1 - Fritzsche, W. A1 - Kneipp, Janina A1 - Bald, Ilko T1 - Gold nanolenses self-assembled by DNA origami N2 - Nanolenses are self-similar chains of metal nanoparticles, which can theoretically provide extremely high field enhancements. Yet, the complex structure renders their synthesis challenging and has hampered closer analyses so far. Here, DNA origami is used to self-assemble 10, 20, and 60 nm gold nanoparticles as plasmonic gold nanolenses (AuNLs) in solution and in billions of copies. Three different geometrical arrangements are assembled, and for each of the three designs, surface-enhanced Raman scattering (SERS) capabilities of single AuNLs are assessed. For the design which shows the best properties, SERS signals from the two different internal gaps are compared by selectively placing probe dyes. The highest Raman enhancement is found for the gap between the small and medium nanoparticle, which is indicative of a cascaded field enhancement. KW - DNA origami KW - SERS KW - Gold nanoparticles KW - Plasmonics PY - 2017 UR - http://pubs.acs.org/doi/pdf/10.1021/acsphotonics.6b00946 DO - https://doi.org/10.1021/acsphotonics.6b00946 SN - 2330-4022 VL - 4 IS - 5 SP - 1123 EP - 1130 AN - OPUS4-40587 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Schürmann, Robin A1 - Tanzer, Katrin A1 - Dąbkowska, Iwona A1 - Denifl, Stephan A1 - Bald, Ilko T1 - Stability of the parent anion of the potential radiosensitizer 8 ‑ Bromoadenine formed by low-energy (<3 eV) electron attachment N2 - 8-Bromoadenine (8BrA) is a potential DNA radiosensitizer for cancer radiation therapy due to its efficient interaction with low-energy electrons (LEEs). LEEs are a short-living species generated during the radiation damage of DNA by high-energy radiation as it is applied in cancer radiation therapy. Electron attachment to 8BrA in the gas phase results in a stable parent anion below 3 eV electron energy in addition to fragmentation products formed by resonant exocyclic bond cleavages. Density functional theory (DFT) calculations of the 8BrA– anion reveal an exotic bond between the bromine and the C8 atom with a bond length of 2.6 Å, where the majority of the charge is located on bromine and the spin is mainly located on the C8 atom. The detailed understanding of such long-lived anionic states of nucleobase analogues supports the rational development of new therapeutic agents, in which the enhancement of dissociative electron transfer to the DNA backbone is critical to induce DNA strand breaks in cancerous tissue. KW - Dissociative electron attachment KW - DNA damage KW - Radiosensitization KW - Mass spectrometry PY - 2017 DO - https://doi.org/10.1021/acs.jpcb.7b02130 SN - 1520-6106 VL - 121 IS - 23 SP - 5730 EP - 5734 AN - OPUS4-40963 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Schürmann, Robin Mathis A1 - Tsering, Thupten A1 - Tanzer, Katrin A1 - Denifl, Stephan A1 - Kumar, S.V.K. A1 - Bald, Ilko T1 - Resonant Formation of Strand Breaks in Sensitized Oligonucleotides Induced by Low-Energy Electrons (0.5–9 eV) N2 - Halogenated nucleobases are used as radiosensitizers in cancer radiation therapy, enhancing the reactivity of DNA to secondary low-energy electrons (LEEs). LEEs induce DNA strand breaks at specific energies (resonances) by dissociative electron attachment (DEA). Although halogenated nucleobases show intense DEA resonances at various electron energies in the gas phase, it is inherently difficult to investigate the influence of halogenated nucleobases on the actual DNA strand breakage over the broad range of electron energies at which DEA can take place (<12 eV). By using DNA origami nanostructures, we determined the energy dependence of the strand break cross-section for oligonucleotides modified with 8-bromoadenine ((8Br)A). These results were evaluated against DEA measurements with isolated (8Br)A in the gas phase. Contrary to expectations, the major contribution to strand breaks is from resonances at around 7 eV while resonances at very low energy (<2 eV) have little influence on strand breaks. KW - Dissociative electron attachment KW - DNA damage KW - DNA nanotechnology KW - Low energy electrons PY - 2017 DO - https://doi.org/10.1002/anie.201705504 SN - 1433-7851 SN - 1521-3773 VL - 56 IS - 36 SP - 10952 EP - 10955 PB - Wiley AN - OPUS4-41850 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Schürmann, Robin A1 - Tsering, Thupten A1 - Tanzer, Katrin A1 - Denifl, Stephan A1 - Kumar, S.V.K. A1 - Bald, Ilko T1 - Resonante Bildung von Strangbrüchen in sensibilisierten Oligonukleotiden induziert durch niederenergetische Elektronen (0.5–9.0 eV) N2 - In der Krebs-Strahlentherapie werden halogenierte Nukleinbasen als Radiosensibilisatoren eingesetzt, um die Reaktivität der DNA gegenüber niederenergetischen Elektro- nen (NEEs) zu erhöhen. NEEs erzeugen DNA-Strangbrüche bei spezifischen Energien (Resonanzen) durch dissoziative Elektronenanlagerung (DEA). Obwohl halogenierte Nukle- inbasen intensive DEA-Resonanzen bei verschiedenen Elek-tronenenergien in der Gasphase aufweisen, kann der Einfluss der halogenierten Nukleinbasen auf tatsächliche DNA-Strangbrüche grundsätzlich nur schwer über den Energiebereich, in dem DEA stattfindet (< 12 eV), untersucht werden. Mithilfe von DNA-Origami-Nanostrukturen haben wir die Energieabhängigkeit der Wirkungsquerschnitte für DNA-Strangbrüche von Oligonukleotiden bestimmt, die mit 8- Bromadenin (8BrA) modifiziert wurden. Diese Ergebnisse wurden mit DEA-Messungen an isoliertem 8BrA in der Gas-phase verglichen. Entgegen der Erwartungen wird der Großteil der Strangbrüche durch Resonanzen um 7 eV hervorgerufen, wohingegen der Einfluss von Resonanzen bei sehr niedrigen Energien (< 2eV) auf die Strangbrüche gering ist. KW - DNA Schäden KW - Niederenergetische Elektronen KW - DNA Nanotechnologie KW - Dissoziative Elektronen Anlagerung PY - 2017 DO - https://doi.org/10.1002/ange.201705504 SN - 1521-3757 SN - 0044-8249 VL - 129 IS - 36 SP - 11094 EP - 11098 PB - Wiley AN - OPUS4-41851 LA - deu AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Keller, A. A1 - Kopyra, J. A1 - Gothelf, K.V. A1 - Bald, Ilko T1 - Electron-induced damage of biotin studied in the gas phase and in the condensed phase at a single-molecule level N2 - Biotin is an essential vitamin that is, on the one hand, relevant for the metabolism, gene expression and in the cellular response to DNA damage and, on the other hand, finds numerous applications in biotechnology. The functionality of biotin is due to two particular sub-structures, the ring structure and the side chain with carboxyl group. The heterocyclic ring structure results in the capability of biotin to form strong intermolecular hydrogen and van der Waals bonds with proteins such as streptavidin, whereas the carboxyl group can be employed to covalently bind biotin to other complex molecules. Dissociative electron attachment (DEA) to biotin results in a decomposition of the ring structure and the carboxyl group, respectively, within resonant features in the energy range 0–12 eV, thereby preventing the capability of biotin for intermolecular binding and covalent coupling to other molecules. Specifically, the fragment anions (M–H)-, (M–O)-, C3N2O-, CH2O2-, OCN-, CN-, OH- and O- are observed, and exemplarily the DEA cross section of OCN- formation is determined to be 3 × 10-19 cm². To study the response of biotin to electrons within a complex condensed environment, we use the DNA origami technique and determine a dissociation yield of (1.1 ± 0.2) × 10-14 cm² at 18 eV electron energy, which represents the most relevant energy for biomolecular damage induced by secondary electrons. The present results thus have important implications for the use of biotin as a label in radiation experiments. KW - Low-energy electrons KW - DNA radiation damage KW - Biotin KW - Atomic force microscopy KW - Anions KW - Mass spectrometry PY - 2013 DO - https://doi.org/10.1088/1367-2630/15/8/083045 SN - 1367-2630 VL - 15 SP - 083045-1 EP - 083045-14 PB - IOP Publishing Ltd. AN - OPUS4-29610 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Wang, Cui A1 - Ebel, Kenny A1 - Heinze, Katja A1 - Resch-Genger, Ute A1 - Bald, Ilko T1 - Quantum Yield of DNA Strand Breaks under Photoexcitation of a Molecular Ruby N2 - Photodynamic therapy (PDT) used for treating cancer relies on the generation of highly reactive oxygen species, for example, singlet oxygen 1O2, by light-induced excitation of a photosensitizer (PS) in the presence of molecular oxygen, inducing DNA damage in close proximity of the PS. Although many precious metal complexes have been explored as PS for PDT and received clinical approval, only recently, the potential of photoactive complexes of nonnoble metals as PS has been discovered. Using the DNA origami technology that can absolutely quantify DNA strand break cross sections, we assessed the potential of the luminescent transition metal complex [Cr(ddpd)2]3+ (ddpd=N,N’-dimethyl-N,N’-dipyridine-2-ylpyridine-2,6-diamine) to damage DNA in an air-saturated aqueous environment upon UV/Vis illumination. The quantum yield for strand breakage, that is, the ratio of DNA strand breaks to the number of absorbed photons, was determined to 1–4%, indicating efficient transformation of photons into DNA strand breaks by [Cr(ddpd)2]3+. KW - Fluorescence KW - Synthesis KW - Production KW - Optical spectroscopy KW - Ligand KW - Photophysics KW - Cr(III) KW - Mechanism KW - NIR KW - PDT KW - Singlet oxygen KW - DNA KW - Origami KW - Quantum yield PY - 2023 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-573631 DO - https://doi.org/10.1002/chem.202203719 SP - 1 EP - 7 AN - OPUS4-57363 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Choi, Youungeun A1 - Kotthoff, Lisa A1 - Olejko, L. A1 - Resch-Genger, Ute A1 - Bald, Ilko T1 - DNA origami-based Förster resonance energy-transfer nanoarrays and their application as ratiometric sensors N2 - DNA origami nanostructures provide a platform where dye molecules can be arranged with nanoscale accuracy allowing to assemble multiple fluorophores without dye–dye aggregation. Aiming to develop a bright and sensitive ratiometric sensor system, we systematically studied the optical properties of nanoarrays of dyes built on DNA origami platforms using a DNA template that provides a high versatility of label choice at minimum cost. The dyes are arranged at distances, at which they efficiently interact by Förster resonance energy transfer (FRET). To optimize array brightness, the FRET efficiencies between the donor fluorescein (FAM) and the acceptor cyanine 3 were determined for different sizes of the array and for different arrangements of the dye molecules within the array. By utilizing nanoarrays providing optimum FRET efficiency and brightness, we subsequently designed a ratiometric pH nanosensor using coumarin 343 as a pH-inert FRET donor and FAM as a pH-responsive acceptor. Our results indicate that the sensitivity of a ratiometric sensor can be improved simply by arranging the dyes into a well-defined array. The dyes used here can be easily replaced by other analyte-responsive dyes, demonstrating the huge potential of DNA nanotechnology for light harvesting, signal enhancement, and sensing schemes in life sciences. KW - DNA origami KW - FRET KW - Sensing KW - Ratiometric sensing KW - Fluorescence PY - 2018 DO - https://doi.org/10.1021/acsami.8b03585 SN - 1944-8244 SN - 1944-8252 VL - 10 IS - 27 SP - 23295 EP - 23302 PB - ACS AN - OPUS4-46002 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Heck, C. A1 - Michaeli, Y. A1 - Bald, Ilko A1 - Ebenstein, Y. T1 - Analytical epigenetics: single-molecule optical detection of DNA and histone modifications N2 - The field of epigenetics describes the relationship between genotype and phenotype, by regulating gene expression without changing the canonical base sequence of DNA. It deals with molecular genomic information that is encoded by a rich repertoire of chemical modifications and molecular interactions. This regulation involves DNA, RNA and proteins that are enzymatically tagged with small molecular groups that alter their physical and chemical properties. It is now clear that epigenetic alterations are involved in development and disease, and thus, are the focus of intensive research. The ability to record epigenetic changes and quantify them in rare medical samples is critical for next generation diagnostics. Optical detection offers the ultimate single-molecule sensitivity and the potential for spectral multiplexing. Here we review recent progress in ultrasensitive optical detection of DNA and histone modifications. KW - Epigenetics KW - Fluorescence KW - SERS PY - 2019 UR - https://www.sciencedirect.com/science/article/pii/S095816691830082X DO - https://doi.org/10.1016/j.copbio.2018.09.006 SN - 0958-1669 VL - 55 SP - 151 EP - 158 PB - Elsevier AN - OPUS4-46680 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Büchele, Dominique A1 - Chao, Madlen A1 - Ostermann, Markus A1 - Leenen, M. A1 - Bald, Ilko T1 - Multivariate chemometrics as a key tool for prediction of K and Fe in a diverse German agricultural soil-set using EDXRF N2 - Within the framework of precision agriculture, the determination of various soil properties is moving into focus, especially the demand for sensors suitable for in-situ measurements. Energy-dispersive X-ray fluorescence (EDXRF) can be a powerful tool for this purpose. In this study a huge diverse soil set (n = 598) from 12 different study sites in Germany was analysed with EDXRF. First, a principal component analysis (PCA) was performed to identify possible similarities among the sample set. Clustering was observed within the four texture classes clay, loam, silt and sand, as clay samples contain high and sandy soils low iron mass fractions. Furthermore, the potential of uni- and multivariate data evaluation with partial least squares regression (PLSR) was assessed for accurate Determination of nutrients in German agricultural samples using two calibration sample sets. Potassium and iron were chosen for testing the performance of both models. Prediction of these nutrients in 598 German soil samples with EDXRF was more accurate using PLSR which is confirmed by a better overall averaged deviation and PLSR should therefore be preferred. KW - XRF KW - Chemometrics KW - Soil KW - Agriculture KW - Multivariate PY - 2019 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-498671 DO - https://doi.org/10.1038/s41598-019-53426-5 VL - 9 SP - 17588 PB - Nature AN - OPUS4-49867 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Vogel, Stefanie A1 - Ebel, Kenny A1 - Schürmann, Robin M. A1 - Heck, Christian A1 - Meiling, T. A1 - Milosavljevic, A. A1 - Giuliani, A. A1 - Bald, Ilko T1 - Vacuum-UV and low-energy electron induced DNA strand breaks - Influence of the DNA sequence and substrate N2 - DNA is effectively damaged by radiation, which can on the one hand lead to cancer and is on the other hand directly exploited in the treatment of tumor tissue. DNA strand breaks are already induced by photons having an energy below the ionization energy of DNA. At high photon energies, most of the DNA strand breaks are induced by low-energy secondary electrons. In the present study we quantified photon and electron induced DNA strand breaks in four different 12mer oligonucleotides. They are irradiated directly with 8.44 eV vacuum ultraviolet (VUV) photons and 8.8 eV low energy electrons (LEE). By using Si instead of VUV transparent CaF2 as a substrate the VUV exposure leads to an additional release of LEEs, which have a maximum energy of 3.6 eV and can significantly enhance strand break cross sections. Atomic force microscopy is used to visualize strand breaks on DNA origami platforms and to determine absolute values for the strand break cross sections. Upon irradiation with 8.44 eV photons all the investigated sequences show very similar strand break cross sections in the range of 1.7 - 2.3 x 10-16 cm2. The strand break cross sections for LEE irradiation at 8.8 eV are one to two orders of magnitude larger than the ones for VUV photons, and a slight sequence dependence is observed. The sequence dependence is even more pronounced for LEEs with energies < 3.6 eV. The present results help to assess DNA damage by photons and electrons close to the ionization threshold. KW - Vacuum-UV KW - Low-Energy KW - DNA KW - DNA-Sequence PY - 2019 DO - https://doi.org/10.1002/cphc.201801152 SN - 1439-7641 VL - 20 IS - 6 SP - 823 EP - 830 PB - WILEY-VCH Verlag GmbH & Co. KGaA CY - Weinheim AN - OPUS4-47464 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Vogel, Stefanie A1 - Ebel, Kenny A1 - Schürmann, Robin M. A1 - Miloavljevic, A. R. A1 - Guliani, A. A1 - Bald, Ilko T1 - Vacuum-UV induced DNA strand breaks – influence of the radiosensitizers 5-bromouracil and 8-bromoadenine N2 - Radiation therapy is a basic part of cancer treatment. To increase the DNA damage in carcinogenic cells and preserve healthy tissue at the same time, radiosensitizing molecules such as halogenated nucleobase analogs can be incorporated into the DNA during the cell reproduction cycle. In the present study 8.44 eV photon irradiation induced single strand breaks (SSB) in DNA sequences modified with the radiosensitizer 5-bromouracil (5BrU) and 8-bromoadenine (8BrA) are investigated. 5BrU was incorporated in the 13mer oligonucleotide flanked by different nucleobases. It was demonstrated that the highest SSB cross sections were reached, when cytosine and thymine were adjacent to 5BrU, whereas guanine as a neighboring nucleobase decreases the activity of 5BrU indicating that competing reaction mechanisms are active. This was further investigated with respect to the distance of guanine to 5BrU separated by an increasing number of adenine nucleotides. It was observed that the SSB cross sections were decreasing with an increasing number of adenine spacers between guanine and 5BrU until the SSB cross sections almost reached the level of a non-modified DNA sequence, which demonstrates the high sequence dependence of the sensitizing effect of 5BrU. 8BrA was incorporated in a 13mer oligonucleotide as well and the strand breaks were quantified upon 8.44 eV photon irradiation in direct comparison to a non-modified DNA sequence of the same composition. No clear enhancement of the SSB yield of the modified in comparison to the non-modified DNA sequence could be observed. Additionally, secondary electrons with a maximum energy of 3.6 eV were generated when using Si as a substrate giving rise to further DNA damage. A clear enhancement in the SSB yield can be ascertained, but to the same degree for both the non-modified DNA sequence and the DNA sequence modified with 8BrA. KW - Vacuum-UV KW - 5-bromouracil KW - 8-bromoadenine PY - 2019 DO - https://doi.org/10.1039/c8cp06813e SN - 1463-9084 VL - 21 IS - 4 SP - 1972 EP - 1979 PB - RSC AN - OPUS4-47462 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Ferreira da Silva, F. A1 - do N. Varella, M. T. A1 - Jones, N. C. A1 - Vrönning Hoffmann, S. A1 - Denifl, S. A1 - Bald, Ilko A1 - Kopyra, J. T1 - Electron-Induced Reactions in 3-Bromopyruvic Acid N2 - 3-Bromopyruvic acid (3BP) is a potential anticancer drug, the action of which on cellular metabolism is not yet entirely clear. The presence of a bromine atom suggests that it is also reactive towards low-energy electrons, which are produced in large quantities during tumour Radiation therapy. Detailed knowledge of the interaction of 3BP with secondary electrons is a prerequisite to gain a complete picture of the effects of 3BP in different forms of Cancer therapy. Herein, dissociative electron attachment (DEA) to 3BP in the gas phase has been studied both experimentally by using a crossed-beam setup and theoretically through scattering and quantum chemical calculations. These results are complemented by a vacuum ultraviolet absorption spectrum. The main fragmentation channel is the formation of Br@ close to 0 eV and within several resonant features at 1.9 and 3–8 eV. At low electron energies, Br@ formation proceeds through s* and p* shape resonances, and at higher energies through core-excited resonances. It is found that the electron-capture cross-section is clearly increased compared with that of non-brominated pyruvic acid, but, at the same time, fragmentation reactions through DEA are significantly altered as well. The 3BP transient negative ion is subject to a lower number of fragmentation reactions than those of pyruvic acid, which indicates that 3BP could indeed act by modifying the electron-transport chains within oxidative phosphorylation. It could also act as a radio-sensitiser. KW - Density functional calculations KW - Dissociative electron attachment KW - Drug discovery KW - Gas-phase reactions KW - Sensitizers PY - 2019 DO - https://doi.org/10.1002/chem.201806132 SN - 0947-6539 VL - 25 IS - 21 SP - 5498 EP - 5506 PB - WILEY-VCH Verlag GmbH & Co. KGaA CY - Weinheim AN - OPUS4-48003 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Choi, Youngeun A1 - Schmidt, Carsten A1 - Tinnefeld, Philip A1 - Bald, Ilko A1 - Roedinger, Stefan T1 - A new reporter design based on DNA origami nanostructures for quantification of short oligonucleotides using microbeads N2 - The DNA origami technique has great potential for the development of brighter and more sensitive reporters for fluorescence based detection schemes such as a microbead-based assay in diagnostic applications. The nanostructures can be programmed to include multiple dye molecules to enhance the measured signal as well as multiple probe strands to increase the binding strength of the target oligonucleotide to these nanostructures. Here we present a proof-of-concept study to quantify short oligonucleotides by developing a novel DNA origami based reporter system, combined with planar microbead assays. Analysis of the assays using the VideoScan digital imaging platform showed DNA origami to be a more suitable reporter candidate for quantification of the target oligonucleotides at lower concentrations than a conventional reporter that consists of one dye molecule attached to a single stranded DNA. Efforts have been made to conduct multiplexed analysis of different targets as well as to enhance fluorescence signals obtained from the reporters. We therefore believe that the quantification of short oligonucleotides that exist in low copy numbers is achieved in a better way with the DNA origami nanostructures as reporters. KW - Origami KW - Nanostructures KW - Microbeads KW - DNA origami KW - Oligonucleotides PY - 2019 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-476443 DO - https://doi.org/10.1038/s41598-019-41136-x SN - 2045-2322 VL - 9 SP - 4769, 1 EP - 8 PB - Nature AN - OPUS4-47644 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Heck, Christian A1 - Kanehira, Y. A1 - Kneipp, Janina A1 - Bald, Ilko T1 - Amorphous Carbon Generation as a Photocatalytic Reaction on DNA-Assembled Gold and Silver Nanostructures N2 - Background signals from in situ-formed amorphous carbon, despite not being fully understood, are known to be a common issue in few-molecule surface-enhanced Raman scattering (SERS). Here, discrete gold and silver nanoparticle aggregates assembled by DNA origami were used to study the conditions for the formation of amorphous carbon during SERS measurements. Gold and silver dimers were exposed to laser light of varied power densities and wavelengths. Amorphous carbon prevalently formed on silver aggregates and at high power densities. Time-resolved measurements enabled us to follow the formation of amorphous carbon. Silver nanolenses consisting of three differently-sized silver nanoparticles were used to follow the generation of amorphous carbon at the single-nanostructure level. This allowed observation of the many sharp peaks that constitute the broad amorphous carbon signal found in ensemble measurements. In conclusion, we highlight strategies to prevent amorphous carbon formation, especially for DNA-assembled SERS substrates. KW - Amorphous carbon KW - DNA origami KW - SERS KW - Nanoparticle dimers KW - Nanolenses PY - 2019 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-486484 DO - https://doi.org/10.3390/molecules24122324 SN - 1420-3049 VL - 24 IS - 12 SP - Article Number: 2324-1 EP - 10 PB - MDPI AN - OPUS4-48648 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Schürmann, Robin A1 - Ebel, Kenny A1 - Nicolas, C. A1 - Milosavljevic, A. R. A1 - Bald, Ilko T1 - Role of valence band states and plasmonic enhancement in electron-transfer-induced transformation of nitrothiophenol N2 - Hot-electron-induced reactions are more and more recognized as a critical and ubiquitous reaction in heterogeneous catalysis. However, the kinetics of these reactions is still poorly understood, which is also due to the complexity of plasmonic nanostructures. We determined the reaction rates of the hot-electron-mediated reaction of 4-nitrothiophenol (NTP) on gold nanoparticles (AuNPs) using fractal kinetics as a function of the laser wavelength and compared them with the plasmonic enhancement of the system. The reaction rates can be only partially explained by the plasmonic response of the NPs. Hence, synchrotron X-ray photoelectron spectroscopy (XPS) measurements of isolated NTP-capped AuNP clusters have been performed for the first time. In this way, it was possible to determine the work function and the accessible valence band states of the NP systems. The results show that besides the plasmonic enhancement, the reaction rates are strongly influenced by the local density of the available electronic states of the system. KW - Photocatalytic reduction KW - Raman-spectroscopy KW - Hot-electrons KW - Work function KW - Surface KW - Nanaoparticles KW - Scattering KW - Molecule KW - Carriers KW - Layers PY - 2019 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-486464 DO - https://doi.org/10.1021/acs.jpclett.9b00848 SN - 1948-7185 VL - 10 IS - 11 SP - 3153 EP - 3158 PB - American Chemical Society CY - Washington, DC AN - OPUS4-48646 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Oertel, J. A1 - Keller, A. A1 - Prinz, J. A1 - Schreiber, B. A1 - Hübner, R. A1 - Kerbusch, J. A1 - Bald, Ilko A1 - Fahmy, K. T1 - Anisotropic metal growth on phospholipid nanodiscs via lipid bilayer expansion N2 - Self-assembling biomolecules provide attractive templates for the preparation of metallic nanostructures. However, the intuitive transfer of the “outer shape” of the assembled macromolecules to the final metallic particle depends on the intermolecular forces among the biomolecules which compete with interactions between template molecules and the metal during metallization. The shape of the bio-template may thus be more dynamic than generally assumed. Here, we have studied the metallization of phospholipid nanodiscs which are discoidal particles of ~10 nm diameter containing a lipid bilayer ~5 nm thick. Using negatively charged lipids, electrostatic adsorption of amine-coated Au nanoparticles was achieved and followed by electroless gold deposition. Whereas Au nanoparticle adsorption preserves the shape of the bio-template, metallization proceeds via invasion of Au into the hydrophobic core of the nanodisc. Thereby, the lipidic phase induces a lateral growth that increases the diameter but not the original thickness of the template. Infrared spectroscopy reveals lipid expansion and suggests the existence of internal gaps in the metallized nanodiscs, which is confirmed by surface-enhanced Raman scattering from the encapsulated lipids. Interference of metallic growth with non-covalent interactions can thus become itself a shape-determining factor in the metallization of particularly soft and structurally anisotropic biomaterials. KW - Lipid Nanodiscs KW - Metal nanoparticles KW - Infrared spectroscopy KW - Surface-enhanced Raman scattering PY - 2016 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-364303 UR - http://www.nature.com/articles/srep26718 DO - https://doi.org/10.1038/srep26718 SN - 2045-2322 VL - 6 SP - 26718-1 EP - 26718-9 PB - Nature Publishing Group CY - London, UK AN - OPUS4-36430 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER -