TY - JOUR A1 - Wan, Wei A1 - Descalzo, Ana B. A1 - Shinde, S. A1 - Weißhoff, Hardy A1 - Orellana, G. A1 - Sellergren, B. A1 - Rurack, Knut T1 - Ratiometric fluorescence detection of phosphorylated amino acids through excited-state proton transfer by using molecularly imprinted polymer (MIP) recognition nanolayers N2 - A 2,3-diaminophenazine bis-urea fluorescent probe monomer (1) was developed. It responds to phenylphosphate and phosphorylated amino acids in a ratiometric fashion with enhanced fluorescence accompanied by the development of a redshifted emission band arising from an excited-state proton transfer (ESPT) process in the hydrogen-bonded probe/analyte complex. The two urea groups of 1 form a cleft-like binding pocket (Kb>10^10 L^2 mol^-2 for 1:2 complex). Imprinting of 1 in presence of ethyl ester- and fluorenylmethyloxycarbonyl (Fmoc)-protected phosphorylated tyrosine (Fmoc-pTyr-OEt) as the template, methacrylamide as co-monomer, and ethyleneglycol dimethacrylate as crosslinker gave few-nanometer-thick molecularly imprinted polymer (MIP) shells on silica core microparticles with excellent selectivity for the template in a buffered biphasic assay. The supramolecular recognition Features were established by spectroscopic and NMR studies. Rational screening of comonomers and cross-linkers allowed to single out the best performing MIP components, giving significant imprinting factors (IF>3.5) while retaining ESPT emission and the ratiometric response in the thin polymer shell. Combination of the bead-based detection scheme with the phase-transfer assay dramatically improved the IF to 15.9, allowing sensitive determination of the analyte directly in aqueous media. KW - Core-shell particles KW - Excited-state proton transfer KW - Fluorescence KW - Molecular imprinting KW - Phosphorylated amino acids PY - 2017 DO - https://doi.org/10.1002/chem.201703041 SN - 1521-3765 SN - 0947-6539 VL - 23 IS - 63 SP - 15974 EP - 15983 PB - Wiley-VCH CY - Weinheim AN - OPUS4-43101 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Ibrahim, B. A1 - Arkhipova, K. A1 - Andeweg, A.C. A1 - Posada-Céspedes, S. A1 - Enault, F. A1 - Gruber, A. A1 - Koonin, E.V. A1 - Kupczok, A. A1 - Lemey, P. A1 - McHardy, A.C. A1 - McMahon, Dino Peter A1 - Pickett, B.E. A1 - Robertson, D.L. A1 - Scheuermann, R.H. A1 - Zhernakova, A. A1 - Zwart, M.P. A1 - Schönhuth, A. A1 - Dutilh, B.E. A1 - Marz, M. T1 - Bioinformatics meets virology: The European virus bioinformatics center's second annual meeting N2 - The Second Annual Meeting of the European Virus Bioinformatics Center (EVBC), held in Utrecht, Netherlands, focused on computational approaches in virology, with topics including (but not limited to) virus discovery, diagnostics, (meta-)genomics, modeling, epidemiology, molecular structure, evolution, and viral ecology. The goals of the Second Annual Meeting were threefold: (i) to bring together virologists and bioinformaticians from across the academic, industrial, professional, and training sectors to share best practice; (ii) to provide a meaningful and interactive scientific environment to promote discussion and collaboration between students, postdoctoral fellows, and both new and established investigators; (iii) to inspire and suggest new research directions and questions. Approximately 120 researchers from around the world attended the Second Annual Meeting of the EVBC this year, including 15 renowned international speakers. This report presents an overview of new developments and novel research findings that emerged during the meeting. KW - Bioinformatics KW - Software KW - Virology KW - Viruses PY - 2018 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-458814 DO - https://doi.org/10.3390/v10050256 SN - 1999-4915 VL - 10 IS - 5 SP - 256, 1 EP - 19 PB - MDPI AN - OPUS4-45881 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Peters, R. A1 - Elbers, I. A1 - Undas, A. A1 - Sijtsma, E. A1 - Briffa, S. A1 - Carnell-Morris, P. A1 - Siupa, A. A1 - Yoon, T.-H. A1 - Burr, L. A1 - Schmid, D. A1 - Tentschert, J. A1 - Hachenberger, Y. A1 - Jungnickel, H. A1 - Luch, A. A1 - Meier, F. A1 - Kocic, J. A1 - Kim, J. A1 - Park, B. C. A1 - Hardy, B. A1 - Johnston, C. A1 - Jurkschat, K. A1 - Radnik, Jörg A1 - Hodoroaba, Vasile-Dan A1 - Lynch, I. A1 - Valsami-Jones, E. T1 - Benchmarking the ACEnano toolbox for characterisation of nanoparticle size and concentration by interlaboratory comparisons N2 - ACEnano is an EU-funded project which aims at developing, optimising and validating methods for the detection and characterisation of nanomaterials (NMs) in increasingly complex matrices to improve confidence in the results and support their use in regulation. Within this project, several interlaboratory comparisons (ILCs) for the determination of particle size and concentration have been organised to benchmark existing analytical methods. In this paper the results of a number of these ILCs for the characterisation of NMs are presented and discussed. The results of the analyses of pristine well-defined particles such as 60 nm Au NMs in a simple aqueous suspension showed that laboratories are well capable of determining the sizes of these particles. The analysis of particles in complex matrices or formulations such as consumer products resulted in larger variations in particle sizes within technologies and clear differences in capability between techniques. Sunscreen lotion sample analysis by laboratories using spICP-MS and TEM/SEM identified and confirmed the TiO2 particles as being nanoscale and compliant with the EU definition of an NM for regulatory purposes. In a toothpaste sample orthogonal results by PTA, spICP-MS and TEM/SEM agreed and stated the TiO2 particles as not fitting the EU definition of an NM. In general, from the results of these ILCs we conclude that laboratories are well capable of determining particle sizes of NM, even in fairly complex formulations. KW - Nanomaterials KW - Benchmarking KW - Inter-laboratory comparison KW - ACEnano KW - Characterisation KW - Size KW - Concentration PY - 2021 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-531852 DO - https://doi.org/10.3390/molecules26175315 SN - 1420-3049 VL - 26 IS - 17 SP - 1 EP - 23 PB - MDPI CY - Basel AN - OPUS4-53185 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - GEN A1 - Peters, R. A1 - Elbers, I. A1 - Undas, A. A1 - Sijtsma, E. A1 - Briffa, S. A1 - Carnell-Morris, P. A1 - Siupa, A. A1 - Yoon, T.-H. A1 - Burr, L. A1 - Schmid, D. A1 - Tentschert, J. A1 - Hachenberger, Y. A1 - Jungnickel, H. A1 - Luch, A. A1 - Meier, F. A1 - Kocic, J. A1 - Kim, J. A1 - Park, B. C. A1 - Hardy, B. A1 - Johnston, C. A1 - Jurkschat, K. A1 - Radnik, Jörg A1 - Hodoroaba, Vasile-Dan A1 - Lynch, I. A1 - Valsami-Jones, E. T1 - Correction: Peters et al. Benchmarking the ACEnano Toolbox for Characterisation of Nanoparticle Size and Concentration by Interlaboratory Comparisons. Molecules 2021, 26, 5315 N2 - This is a corrigendum to the original article "Benchmarking the ACEnano toolbox for characterisation of nanoparticle size and concentration by interlaboratory comparisons" that was published in the journal "Molecules", vol. 26 (2021), no. 17, article 5315. PY - 2022 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-554381 DO - https://doi.org/10.3390/molecules27154849 VL - 27 IS - 4849 SP - 1 EP - 3 PB - MDPI CY - Basel AN - OPUS4-55438 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER -