TY - JOUR A1 - Heck, Christian A1 - Prinz, Julia A1 - Dathe, A. A1 - Merck, V. A1 - Stranik, O. A1 - Fritzsche, W. A1 - Kneipp, Janina A1 - Bald, Ilko T1 - Gold nanolenses self-assembled by DNA origami JF - ACS Photonics N2 - Nanolenses are self-similar chains of metal nanoparticles, which can theoretically provide extremely high field enhancements. Yet, the complex structure renders their synthesis challenging and has hampered closer analyses so far. Here, DNA origami is used to self-assemble 10, 20, and 60 nm gold nanoparticles as plasmonic gold nanolenses (AuNLs) in solution and in billions of copies. Three different geometrical arrangements are assembled, and for each of the three designs, surface-enhanced Raman scattering (SERS) capabilities of single AuNLs are assessed. For the design which shows the best properties, SERS signals from the two different internal gaps are compared by selectively placing probe dyes. The highest Raman enhancement is found for the gap between the small and medium nanoparticle, which is indicative of a cascaded field enhancement. KW - DNA origami KW - SERS KW - Gold nanoparticles KW - Plasmonics PY - 2017 UR - http://pubs.acs.org/doi/pdf/10.1021/acsphotonics.6b00946 DO - https://doi.org/10.1021/acsphotonics.6b00946 SN - 2330-4022 VL - 4 IS - 5 SP - 1123 EP - 1130 AN - OPUS4-40587 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Lauer, Franziska A1 - Seifert, Stephan A1 - Kneipp, Janina A1 - Weidner, Steffen T1 - Simplifying the Preparation of Pollen Grains for MALDI-TOF MS Classification JF - International Journal of Molecular Sciences N2 - Matrix-assisted laser desorption ionization time of flight mass spectrometry (MALDI-TOF MS) is a well-implemented analytical technique for the investigation of complex biological samples. In MS, the sample preparation strategy is decisive for the success of the measurements. Here, sample preparation processes and target materials for the investigation of different pollen grains are compared. A reduced and optimized sample preparation process prior to MALDI-TOF measurement is presented using conductive carbon tape as target. The application of conductive tape yields in enhanced absolute signal intensities and mass spectral pattern information, which leads to a clear separation in subsequent pattern analysis. The results will be used to improve the taxonomic differentiation and identification, and might be useful for the development of a simple routine method to identify pollen based on mass spectrometry. KW - PCA KW - MALDI-TOF MS KW - Conductive carbon tape KW - Pollen KW - Sample pretreatment PY - 2017 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-392885 UR - http://www.mdpi.com/1422-0067/18/3/543/ DO - https://doi.org/10.3390/ijms18030543 SN - 1422-0067 VL - 18 IS - 3 SP - 543 EP - 554 PB - MDPI AG CY - Basel, Switzerland AN - OPUS4-39288 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Zeise, I. A1 - Heiner, Z. A1 - Holz, S. A1 - Joester, Maike A1 - Buttner, C. A1 - Kneipp, Janina T1 - Raman imaging of plant cell walls in sections of cucumis sativus JF - PLANTS-BASEL N2 - Raman microspectra combine information on chemical composition of plant tissues with spatial information. The contributions from the building blocks of the cell walls in the Raman spectra of plant tissues can vary in the microscopic sub-structures of the tissue. Here, we discuss the analysis of 55 Raman maps of root, stem, and leaf tissues of Cucumis sativus, using different spectral contributions from cellulose and lignin in both univariate and multivariate imaging methods. Imaging based on hierarchical cluster analysis (HCA) and principal component analysis (PCA) indicates different substructures in the xylem cell walls of the different tissues. Using specific signals from the cell wall spectra, analysis of the whole set of different tissue sections based on the Raman images reveals differences in xylem tissue morphology. Due to the specifics of excitation of the Raman spectra in the visible wavelength range (532 nm), which is, e.g., in resonance with carotenoid species, effects of photobleaching and the possibility of exploiting depletion difference spectra for molecular characterization in Raman imaging of plants are discussed. The reported results provide both, specific information on the molecular composition of cucumber tissue Raman spectra, and general directions for future imaging studies in plant tissues. KW - Raman KW - Imaging KW - Pants PY - 2018 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-474610 DO - https://doi.org/10.3390/plants7010007 SN - 2223-7747 VL - 7 IS - 1 SP - 7, 1 EP - 16 PB - MDPI, ST ALBAN-ANLAGE 66, CH-4052 BASEL, SWITZERLAND AN - OPUS4-47461 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Lauer, Franziska A1 - Seifert, Stephan A1 - Kneipp, Janina A1 - Weidner, Steffen T1 - Simplifying the preparation of pollen grains for MALDI-TOF MS classification JF - International Journal of Molecular Sciences N2 - Matrix-assisted laser desorption ionization time of flight mass spectrometry (MALDI-TOF MS) is a well-implemented analytical technique for the investigation of complex biological samples. In MS, the sample preparation strategy is decisive for the success of the measurements. Here, sample preparation processes and target materials for the investigation of different pollen grains are compared. A reduced and optimized sample preparation process prior to MALDI-TOF measurement is presented using conductive carbon tape as target. The application of conductive tape yields in enhanced absolute signal intensities and mass spectral pattern information, which leads to a clear separation in subsequent pattern analysis. The results will be used to improve the taxonomic differentiation and identification, and might be useful for the development of a simple routine method to identify pollen based on mass spectrometry. KW - MALDI KW - Conductive carbon tape KW - Pollen KW - Sample pretreatment KW - Principal component analysis PY - 2017 DO - https://doi.org/10.3390/ijms18030543 SN - 1422-0067 SN - 1661-6596 VL - 18 IS - 3 SP - 543-1 EP - 543-11 PB - MDPI AN - OPUS4-41733 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Diehn, Sabrina A1 - Zimmermann, B. A1 - Bagcioglu, M. A1 - Seifert, Stephan A1 - Kohler, A. A1 - Ohlson, M. A1 - Fjellheim, S. A1 - Weidner, Steffen A1 - Kneipp, Janina T1 - Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) shows adaption of grass pollen composition JF - Scientific Reports N2 - MALDI time-of-flight mass spectrometry (MALDI-TOF MS) has become a widely used tool for the classification of biological samples. The complex chemical composition of pollen grains leads to highly specific, fingerprint-like mass spectra, with respect to the pollen species. Beyond the species-specific composition, the variances in pollen chemistry can be hierarchically structured, including the level of different populations, of environmental conditions or different genotypes. We demonstrate here the sensitivity of MALDI-TOF MS regarding the adaption of the chemical composition of three Poaceae (grass) pollen for different populations of parent plants by analyzing the mass spectra with partial least squares discriminant analysis (PLS-DA) and principal component analysis (PCA). Thereby, variances in species, population and specific growth conditions of the plants were observed simultaneously. In particular, the chemical pattern revealed by the MALDI spectra enabled discrimination of the different populations of one species. Specifically, the role of environmental changes and their effect on the pollen chemistry of three different grass species is discussed. Analysis of the Group formation within the respective populations showed a varying influence of plant genotype on the classification, depending on the species, and permits conclusions regarding the respective rigidity or plasticity towards environmental changes. KW - Pollen KW - MALDI-TOF MS KW - Classification KW - Partial least square discriminant analysis (PLS-DA) KW - Principal component analysis (PCA) PY - 2018 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-465294 DO - https://doi.org/10.1038/s41598-018-34800-1 SN - 2045-2322 VL - 8 IS - 1 SP - 16591, 1 EP - 11 PB - Nature AN - OPUS4-46529 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Kneipp, Janina A1 - Zhang, Zhiyang T1 - Mapping the Inhomogeneity in Plasmonic Catalysis on Supported Gold Nanoparticles Using Surface-Enhanced Raman Scattering Microspectroscopy JF - Analytical Chemistry N2 - The characterization of a catalyst often occurs by averaging over large areas of the catalyst material. On the other hand, optical probing is easily achieved at a resolution at the micrometer scale, specifically in microspectroscopy. Here, using surface-enhanced Raman scattering (SERS) mapping of larger areas with micrometer-sized spots that contain tens to hundreds of supported gold nanoparticles each, the photoinduced dimerization of p-aminothiophenol (PATP) to 4,4′-dimercaptoazobenzene (DMAB) was monitored. The mapping data reveal an inhomogeneous distribution of catalytic activity in the plasmon-catalyzed reaction in spite of a very homogeneous plasmonic enhancement of the optical signals in SERS. The results lead to the conclusion that only a fraction of the nanostructures may be responsible for a high catalytic activity. The high spot-to-spot variation in catalytic activity is also demonstrated for DMAB formation by the plasmon-catalyzed reduction from p-nitrothiophenol (PNTP) and confirms that an improvement of the accuracy and reproducibility in the characterization of catalytic reactions can be achieved by microspectroscopic probing of many positions. Using SERS micromapping during the incubation of PATP, we demonstrate that the reaction occurs during the incubation process and is influenced by different parameters, leading to the conclusion of dimerization in a gold-catalyzed, nonphotochemical reaction as an alternative to the plasmon-catalyzed process. The results have implications for the future characterization of new catalyst materials as well as for optical sensing using plasmonic materials. KW - P-aminothiophenol KW - Silver nanoparticles KW - Chemical transformation KW - Metal nanoparticles KW - Coupling reactions KW - AU nanoparticle KW - AG nanoparticle KW - Spectroscopy KW - Sers KW - Molecule PY - 2018 DO - https://doi.org/10.1021/acs.analchem.8b01701 VL - 90 IS - 15 SP - 9199 EP - 9205 PB - American Chemical Society AN - OPUS4-46372 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Bagcioglu, M. A1 - Kohler, A. A1 - Seifert, Stephan A1 - Kneipp, Janina A1 - Zimmermann, B. T1 - Monitoring of plant-environment interactions by high-throughput FTIR spectroscopy of pollen JF - Methods in Ecology and Evolution N2 - 1. Fourier transform infrar ed (FTIR) spectroscopy enables chemical analysis of pollen samples for plant phenotyping to stud y plant–environment interactions, such as influence of climate change or pathogens. However, current approach, such as microspectrosc opy and attenuated total refle ction spectrosco py, doe s not allow fo r high-throughput protocols. This st udy at hand suggests a new sp ectroscopic method for high-throughp ut characterization of pollen. 2. Samples were measured as thin films of pollen fragments using a Bruker FTIR spe ctrometer with a high-throughput eXTension (HTS-XT) unit employing 384-well plates. In total, 146 pollen samples, belonging to 31 different pollen species of Fagaceae and Betulaceae and collected during three consecutive years (2012–2014) at locations in Croatia, Germany and Norway, were analysed. Critical steps in the sample preparation and measurement, such as variabilities between technical replicates, between microplates and between spectrometers, were studied. 3. Measurement variations due to sample preparation, microplate holders and instrumentation were low, and thus allowed differentiation of samples with respect to phylogeny and biogeography. The spectral variability for a ran ge of Fagales spec ies (Fagus, Quercus, Betula, Corylus, Alnus and Ostrya) showed high-species-specific differences in pollen’s chemical composition due to eithe r location or year. Statistically significant inter-annual and locational differences in the pollen spectra indicate that pollen chemical composition has high phenotypic plasticity and is influenced by local climate conditions. The variations in composition are connected to lipids, proteins, carbohydrates and sporopollenins that play crucial ro les in cold and desiccation tolerance, protection against UV radiation and as material and energy reserves. 4. The results of this study demonstrate the value of high-throughput FTIR approach for the systematic collection of data on ecosystems. The novel FTIR approach offers fast, reliable and economical screening of large number of samples by semi-automated methodology. The high-throughput approach could provide crucial understanding on plant–climate interactions with respect to biochemical variation within genera, species and populations. KW - Ecology and environmental sciences KW - Infrared spectroscopy KW - Pollen PY - 2017 UR - http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12697/epdf DO - https://doi.org/10.1111/2041-210X.12697 VL - 8 IS - 7 SP - 870 EP - 880 PB - British Ecological Society CY - London, UK AN - OPUS4-41540 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Bagcioglu, M. A1 - Kohler, A. A1 - Seifert, St. A1 - Kneipp, Janina A1 - Zimmermann, B. T1 - Monitoring of plant–environment interactions by high-throughput FTIR spectroscopy of pollen JF - Methods in Ecology and Evolution N2 - 1. Fourier transform infrared (FTIR) spectroscopy enables chemical analysis of pollen samples for plant phenotyping to study plant–environment interactions, such as influence of climate change or pathogens.However, current approach, such as microspectroscopy and attenuated total reflection spectroscopy, does not allow for highthroughput protocols. This study at hand suggests a new spectroscopic method for high-throughput characterization of pollen. 2. Samples were measured as thin films of pollen fragments using a Bruker FTIR spectrometer with a highthroughput eXTension (HTS-XT) unit employing 384-well plates. In total, 146 pollen samples, belonging to 31 different pollen species of Fagaceae and Betulaceae and collected during three consecutive years (2012–2014) at locations in Croatia, Germany and Norway, were analysed. Critical steps in the sample preparation and measurement, such as variabilities between technical replicates, between microplates and between spectrometers, were studied. 3. Measurement variations due to sample preparation, microplate holders and instrumentation were low, and thus allowed differentiation of samples with respect to phylogeny and biogeography. The spectral variability for a range of Fagales species (Fagus, Quercus, Betula, Corylus, Alnus and Ostrya) showed high-species-specific differences in pollen’s chemical composition due to either location or year. Statistically significant inter-annual and locational differences in the pollen spectra indicate that pollen chemical composition has high phenotypic plasticity and is influenced by local climate conditions. The variations in composition are connected to lipids, proteins, carbohydrates and sporopollenins that play crucial roles in cold and desiccation tolerance, protection against UVradiation and asmaterial and energy reserves. 4. The results of this study demonstrate the value of high-throughput FTIR approach for the systematic collection of data on ecosystems. The novel FTIR approach offers fast, reliable and economical screening of large number of samples by semi-automated methodology. The high-throughput approach could provide crucial understanding on plant–climate interactions with respect to biochemical variation within genera, species and populations. KW - Alnus KW - Betula KW - Betulaceae KW - Corylus KW - Ecology and environmental sciences KW - Fagaceae KW - Fagus KW - Infrared spectroscopy KW - Pollen KW - Quercus PY - 2017 DO - https://doi.org/10.1111/2041-210X.12697 VL - 2017 IS - 8 SP - 870 EP - 880 PB - British Ecological Society AN - OPUS4-41838 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Kneipp, Janina A1 - Li, X. A1 - Sherwood, M. A1 - Panne, Ulrich A1 - Kneipp, H. A1 - Stockman, M.I. A1 - Kneipp, K. T1 - Gold Nanolenses Generated by Laser Ablation-Efficient Enhancing Structure for Surface Enhanced Raman Scattering Analytics and Sensing JF - Analytical chemistry N2 - Nanoaggregates formed by metal spheres of different radii and interparticle distances represent finite, deterministic, self-similar systems that efficiently concentrate optical fields and act as “nanolenses”. Here we verify experimentally the theoretical concept of nanolenses and explore their potential as enhancing nanostructures in surface enhanced Raman scattering (SERS). Self-similar structures formed by gold nanospheres of different sizes are generated by laser ablation from solid gold into water. These nanolenses exhibit SERS enhancement factors on the order of 109. The “chemically clean” preparation process provides several advantages over chemically prepared nanoaggregates and makes the stable and biocompatible gold nanolenses potent enhancing structures for various analytical and sensing applications. KW - SERS KW - Ablation KW - Gold-Nanopartikel PY - 2008 DO - https://doi.org/10.1021/ac8002215 SN - 0003-2700 SN - 1520-6882 VL - 80 IS - 11 SP - 4247 EP - 4251 PB - American Chemical Society CY - Washington, DC AN - OPUS4-18231 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Merk, Virginia A1 - Schulte, Franziska A1 - Rooch, Heidemarie A1 - Feldmann, Ines A1 - Dörfel, Ilona A1 - Österle, Werner A1 - Panne, Ulrich A1 - Kneipp, Janina T1 - Surface-enhanced Raman scattering with silver nanostructures generated in situ in a sporopollenin biopolymer matrix JF - Chemical communications N2 - Silver nanoparticles were generated based on citrate reduction in the ultrastructure of the sporopollenin biopolymer of Ambrosia artemisiifolia (ragweed) and Secale cereale (rye). The nanoparticles enable the acquisition of SERS spectra and thereby a vibrational characterization of the local molecular structure of sporopollenin. PY - 2011 DO - https://doi.org/10.1039/c0cc05326k SN - 0022-4936 SN - 0009-241x SN - 1359-7345 SN - 1364-548x N1 - Geburtsname von Merk, Virginia: Joseph, V. - Birth name of Merk, Virginia: Joseph, V. VL - 47 IS - 11 SP - 3236 EP - 3238 PB - Royal Society of Chemistry CY - Cambridge AN - OPUS4-23482 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER -