TY - JOUR A1 - Al-Waqfi, R. A. A1 - Khan, C. J. A1 - Irving, O. J. A1 - Matthews, Lauren A1 - Albrecht, T. T1 - Crowding Effects during DNA Translocation in Nanopipettes N2 - Quartz nanopipettes are an important emerging class of electric single-molecule sensors for DNA, proteins, their complexes, as well as other biomolecular targets. However, in comparison to other resistive pulse sensors, nanopipettes constitute a highly asymmetric environment and the transport of ions and biopolymers can become strongly directiondependent. For double-stranded DNA, this can include the characteristic translocation time and tertiary structure, but as we show here, nanoconfinement can also unlock capabilities for biophysical and bioanalytical studies at the single-molecule level. To this end, we show how the accumulation of DNA inside the nanochannel leads to crowding effects, and in some cases reversible blocking of DNA entry, and provide a detailed analysis based on a range of different DNA samples and experimental conditions. Moreover, using biotin-functionalized DNA and streptavidinmodified gold nanoparticles as target, we demonstrate in a proof-of-concept study how the crowding effect, and the resulting increased residence time in nanochannel, can be exploited by first injecting the DNA into the nanochannel, followed by incubation with the nanoparticle target and analysis of the complex by reverse translocation. We thereby integrate elements of sample processing and detection into the nanopipette, as an important conceptual advance, and make a case for the wider applicability of this device concept. KW - DNA translocation KW - Transport KW - Resistive-pulse sensing KW - Nanopores KW - Nanopipettes KW - Crowding KW - Confinement PY - 2025 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-630448 DO - https://doi.org/10.1021/acsnano.5c01529 SN - 1936-086X VL - 19 IS - 17 SP - 1 EP - 9 PB - ACS Publications AN - OPUS4-63044 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Sentker, K. A1 - Zantop, A. W. A1 - Lippmann, M. A1 - Hofmann, T. A1 - Seeck, O. H. A1 - Kityk, A. V. A1 - Yildirim, Arda A1 - Schönhals, Andreas A1 - Mazza, M. G. A1 - Huber, P. T1 - Quantized self-assembly of discotic rings in a liquid crystal confined in nanopores N2 - Disklike molecules with aromatic cores spontaneously stack up in linear columns with high, onedimensional charge carrier mobilities along the columnar axes, making them prominent model systems for functional, self-organized matter.We show by high-resolution optical birefringence and synchrotron-based x-ray diffraction that confining a thermotropic discotic liquid crystal in cylindrical nanopores induces a quantized formation of annular layers consisting of concentric circular bent columns, unknown in the bulk state. Starting from the walls this ring self-assembly propagates layer by layer towards the pore center in the supercooled domain of the bulk isotropic-columnar transition and thus allows one to switch on and off reversibly single, nanosized rings through small temperature variations. By establishing a Gibbs free energy phase diagram we trace the phase transition quantization to the discreteness of the layers’ excess bend deformation energies in comparison to the thermal energy, even for this near room-temperature system. Monte Carlo simulations yielding spatially resolved nematic order parameters, density maps, and bondorientational order parameters corroborate the universality and robustness of the confinement-induced columnar ring formation as well as its quantized nature. KW - Discotic liquid crystals KW - Nanopores PY - 2018 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-440253 DO - https://doi.org/10.1103/PhysRevLett.120.067801 SN - ‎0031-9007 SN - 1079-7114 VL - 120 IS - 6 SP - 067801-1 EP - 067801-7 PB - American Physical Society AN - OPUS4-44025 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER - TY - JOUR A1 - Strangfeld, Christoph T1 - Quantification of the Knudsen Effect on the Effective Gas diffusion Coefficient in Partially Saturated Pore Distributions N2 - The effective gas diffusion coefficient describes the process of gas diffusion in porous materials. Several materials have a significant number of micropores in the lower nanometre range leading to a reduction of gas diffusion (Knudsen effect). In the case of partial pore saturation during adsorption, the available pore space is further reduced, as is the gas diffusion. In this study, the influence of partially saturated pores on the Knudsen effect and on the gas diffusion is quantified. Three different pore geometries are investigated (slit, cylindrical and spherical pores) and three different types of pore size distribution, including a broad equal distribution, three narrow normal distributions and two measured distributions of concrete. Besides the intensive computation of the exact pore saturation, a simplified model with low computational requirements is suggested. This study shows that the influence of the water layer thickness on the effective diffusion becomes significant for pore radii below 50 nm and the assumed pore geometry is important. At the end, the overall effect is quantified for an amorphous material with most pore radii below 30 nm. At a moisture level of 50% relative humidity, the effective diffusion is reduced by 35% due to partial saturation. KW - Effective gas diffusion coefficient KW - Gas transport in porous media KW - Knudsen diffusion KW - Moisture transport KW - Nanopores PY - 2021 UR - https://nbn-resolving.org/urn:nbn:de:kobv:b43-528509 DO - https://doi.org/10.1002/adem.202100106 VL - 23 IS - 10 SP - 2100106 PB - Wiley AN - OPUS4-52850 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER -