TY - CONF A1 - Ickert, Stefanie A1 - Riedel, Jens A1 - Beck, S A1 - Linscheid, M.W. T1 - Collision Specific Fragmentation of Oligonucleotides in Tandem Mass Spectrometry N2 - Tandem MS experiments allow the fast acquisition of spectral datasets with enormous size and unprecedented content of information. The most commonly used method is undoubtedly collision induced dissociation (CID). The relatively young technical adaptation of CID to modern day Orbitrap experiments needs a higher confinement voltage and has accordingly been named higher-energy collisional dissociation HCD. Despite the name the absolute value of transferred energy per collision in HCD is lower than in CID. Since for many proteins CID and HCD result in comparable fragmentation patterns the two techniques are often treated as interchangeable. This approach is, however, not without pitfalls as other classes of biomolecules often exhibit strongly pronounced fragmentation specificity. As an example, MS/MS experiments on several 4-mer oligonucleotides were conducted employing both collision methods and the results were thoroughly compared. It is apparent that not only the total fragment yield but also the identity of the observed fragments differ significantly between the two methods. T2 - Jahrestagung der Deutschen Gesellschaft für Massenspektrometrie DGMS CY - Kiel, Germany DA - 05.03.2017 KW - Tandem MS KW - DNA KW - Mass Spectrometry PY - 2017 AN - OPUS4-42328 LA - eng AD - Bundesanstalt fuer Materialforschung und -pruefung (BAM), Berlin, Germany ER -