TY - GEN A1 - Frömmel, Ulrike A1 - Lehmann, Werner A1 - Rödiger, Stefan A1 - Böhm, Alexander A1 - Nitschke, Jörg A1 - Weinreich, Jörg A1 - Groß, Julia A1 - Roggenbuck, Dirk A1 - Zinke, Olaf A1 - Ansorge, Hermann A1 - Vogel, Steffen A1 - Klemm, Per A1 - Wex, Thomas A1 - Schröder, Christian A1 - Wieler, Lothar H. A1 - Schierack, Peter T1 - Adhesion of human and animal Escherichia coli strains in association with their virulence-associated genes and phylogenetic origins T2 - Applied and environmental microbiology N2 - Intestinal colonization is influenced by the ability of the bacterium to inhabit a niche, which is based on the expression of colonization factors. Escherichia coli carries a broad range of virulence-associated genes (VAGs) which contribute to intestinal (inVAGs) and extraintestinal (exVAGs) infection. Moreover, initial evidence indicates that inVAGs and exVAGs support intestinal colonization. We developed new screening tools to genotypically and phenotypically characterize E. coli isolates originating in humans, domestic pigs, and 17 wild mammal and avian species. We analyzed 317 isolates for the occurrence of 44 VAGs using a novel multiplex PCR microbead assay (MPMA) and for adhesion to four epithelial cell lines using a new adhesion assay. We correlated data for the definition of new adhesion genes. inVAGs were identified only sporadically, particularly in roe deer (Capreolus capreolus) and the European hedgehog ( Erinaceus europaeus). The prevalence of exVAGs depended on isolation from a specific host. Human uropathogenic E. coli isolates carried exVAGs with the highest prevalence, followed by badger (Meles meles) and roe deer isolates. Adhesion was found to be very diverse. Adhesion was specific to cells, host, and tissue, though it was also unspecific. Occurrence of the following VAGs was associated with a higher rate of adhesion to one or more cell lines: afa-dra, daaD, tsh, vat, ibeA, fyuA, mat, sfa-foc, malX, pic, irp2, and papC. In summary, we established new screening methods which enabled us to characterize large numbers of E. coli isolates. We defined reservoirs for potential pathogenic E. coli. We also identified a very broad range of colonization strategies and defined potential new adhesion genes. Y1 - 2013 U6 - https://doi.org/10.1128/AEM.01384-13 SN - 1098-5336 SN - 0099-2240 VL - 79 IS - 19 SP - 5814 EP - 5829 ER - TY - GEN A1 - Boch, Steffen A1 - Allan, Eric A1 - Birkhofer, Klaus A1 - Bossdorf, Oliver A1 - Blüthgen, Nico A1 - Christ-Breulmann, Sabina A1 - Diekötter, Tim A1 - Dormann, Carsten F. A1 - Gossner, Martin M. A1 - Hallmann, Christine A1 - Hemp, Andreas A1 - Hölzel, Norbert A1 - Jung, Kirsten A1 - Klaus, Valentin H. A1 - Klein, Alexandra M. A1 - Kleinebecker, Till A1 - Lange, Markus A1 - Müller, Jörg A1 - Nacke, Heiko A1 - Prati, Daniel A1 - Renner, Swen C. A1 - Rothenwöhrer, Christoph A1 - Schall, Peter A1 - Schulze, Ernst-Detlef A1 - Socher, Stephanie A. A1 - Tscharntke, Teja A1 - Türke, Manfred A1 - Weiner, Christiane N. A1 - Weisser, Wolfgang W. A1 - Westphal, Catrin A1 - Wolters, Volkmar A1 - Wubet, Tesfaye A1 - Fischer, Markus T1 - Extensive und jährlich wechselnde Nutzungsintensität fördert den Artenreichtum im Grünland T2 - ANLIEGEN NATUR Y1 - 2016 UR - https://www.biom.uni-freiburg.de/mitarbeiter/dormann/boch2016anliegennatur.pdf SN - 1864-0729 VL - 38 IS - 1 SP - 86 EP - 95 ER - TY - GEN A1 - Ahmels, Peter A1 - Voß, Ulrike A1 - Gago, Aldo A1 - Lettenmeier, Philipp A1 - Voglstätter, Christopher A1 - Schmitz, Steffen A1 - Kleinickel, Cindy A1 - Barsch, Markus A1 - Rockmann, Rico A1 - Pumpa, Martin A1 - Fischer, Ulrich A1 - Voigt, André T1 - Wasserstoff zur Windenergiespeicherung – Ergebnisse des Projektes WESpe T2 - HZwei: das Magazin für Wasserstoff und Brennstoffzellen KW - Wasserstoff KW - Energiespeicherung Y1 - 2018 UR - https://www.hzwei.info/wp-content/uploads/2019/03/HZwei_April_2018.pdf SN - 1862-393X VL - 18 IS - 2 SP - 28 EP - 30 ER - TY - GEN A1 - Jung, Conrad H. G. A1 - Waldeck, Peter A1 - Petrick, Ingolf A1 - Braune, Steffen A1 - Küpper, Jan-Heiner A1 - Jung, Friedrich T1 - Bioreactor for the cultivation of Arthrospira platensis under controlled conditions T2 - Journal of Cellular Biotechnology N2 - A vertical flat-type bioreactor consisting of transparent polyethylene (food safe) was constructed, which is characterized by a flexible design and allows the adjustment of a light path of 1 cm – 8.5 cm and a working volume of 1.5 l – 4 l. To characterize the performance of the bioreactor, cultivation experiments were performed with the cyanobacterium Arthrospira platensis (AP). The growth was assessed continuously by monitoring optical density and intermittently by measuring the dry weight of the AP biomass. An on-line measurement technique for estimating biomass production rate in a photosynthetic microalgae culture was developed. The oxygen produced by AP in the culture medium was flushed out sparging using a mixture of air and CO2 (1%). Factors which might influence the AP growth were monitored: pH, temperature, oxygen concentration and the filling level were corrected automatically to compensate evaporation losses. As an example, the huge influence of the light intensity on the AP growth was tested. The increase of the photon flux density of 15 to 1200μmol/(l · d) led to a 22-fold increase of the productivity and a 3.1-fold shorter doubling time. Using an online measurement technique - together with the control of the growth process via a wireless local area network (WLAN) router and virtual private network - allows monitoring the growth of Arthrospira platensis remotely. Y1 - 2021 UR - https://content.iospress.com/articles/journal-of-cellular-biotechnology/jcb210032 U6 - https://doi.org/10.3233/JCB-210032 VL - 7 IS - 1 SP - 35 EP - 40 ER - TY - GEN A1 - Jung, Conrad H. G. A1 - Braune, Steffen A1 - Waldeck, Peter A1 - Küpper, Jan-Heiner A1 - Petrick, Ingolf A1 - Jung, Friedrich T1 - Morphology and Growth of Arthrospira platensis during Cultivation in a Flat-Type Bioreactor T2 - Life N2 - Arthrospira platensis (AP) is a cyanobacterium with a high economic value and is nowadays one of the most important industrially cultivated microalgae. Knowledge of its growth is essential for the understanding of its physiology and yield. The growth of AP biomass occurs through two mechanisms: (1) propagation by fragmentation of trichomes, and (2) the trichomes are extended by binary fission until they reach their mature status. These phases are visualized by live cell light and laser scanning microscopy, demonstrating the different phases of AP growth. KW - Arthrospira platensis KW - Spirulina KW - life cycle KW - morphology KW - fragmentation KW - fission Y1 - 2021 UR - https://www.mdpi.com/2075-1729/11/6/536/htm U6 - https://doi.org/10.3390/life11060536 SN - 2075-1729 VL - 11 IS - 6 ER - TY - GEN A1 - Jung, Conrad H. G. A1 - Waldeck, Peter A1 - Sykora, Shadi A1 - Braune, Steffen A1 - Petrick, Ingolf A1 - Küpper, Jan-Heiner A1 - Jung, Friedrich T1 - Influence of Different Light-Emitting Diode Colors on Growth and Phycobiliprotein Generation of Arthrospira platensis T2 - Life Y1 - 2022 U6 - https://doi.org/10.3390/life12060895 SN - 2075-1729 VL - 12 IS - 6 ER - TY - GEN A1 - Jung, Friedrich A1 - Braune, Steffen A1 - Jung, Conrad H. G. A1 - Krüger-Genge, Anne A1 - Waldeck, Peter A1 - Petrick, Ingolf A1 - Küpper, Jan-Heiner T1 - Lipophilic and Hydrophilic Compounds from Arthrospira platensis and Its Effects on Tissue and Blood Cells—An Overview T2 - Life Y1 - 2022 U6 - https://doi.org/10.3390/life12101497 SN - 2075-1729 VL - 12 IS - 10 ER - TY - GEN A1 - Neyret, Margot A1 - Le Provost, Gaëtane A1 - Boesing, Andrea Larissa A1 - Schneider, Florian D. A1 - Baulechner, Dennis A1 - Bergmann, Joana A1 - Vries, Franciska T. de A1 - Fiore-Donno, Anna Maria A1 - Geisen, Stefan A1 - Goldmann, Kezia A1 - Merges, Anna A1 - Saifutdinov, Ruslan A. A1 - Simons, Nadja K. A1 - Tobias, Joseph A. A1 - Zaitsev, Andrey S. A1 - Gossner, Martin M. A1 - Jung, Kirsten A1 - Kandeler, Ellen A1 - Krauss, Jochen A1 - Penone, Caterina A1 - Schloter, Michael A1 - Schulz, Stefanie A1 - Staab, Michael A1 - Wolters, Volkmar A1 - Apostolakis, Antonios A1 - Birkhofer, Klaus A1 - Boch, Steffen A1 - Boeddinghaus, Runa S. A1 - Bolliger, Ralph A1 - Bonkowski, Michael A1 - Buscot, François A1 - Dumack, Kenneth A1 - Fischer, Markus A1 - Gan, Huei Ying A1 - Heinze, Johannes A1 - Hölzel, Norbert A1 - John, Katharina A1 - Klaus, Valentin H. A1 - Kleinebecker, Till A1 - Marhan, Sven A1 - Müller, Jörg A1 - Renner, Swen C. A1 - Rillig, Matthias C. A1 - Schenk, Noëlle V. A1 - Schöning, Ingo A1 - Schrumpf, Marion A1 - Seibold, Sebastian A1 - Socher, Stephanie A. A1 - Solly, Emily F. A1 - Teuscher, Miriam A1 - Kleunen, Mark van A1 - Wubet, Tesfaye A1 - Manning, Peter T1 - A slow-fast trait continuum at the whole community level in relation to land-use intensification T2 - Nature Communications N2 - AbstractOrganismal functional strategies form a continuum from slow- to fast-growing organisms, in response to common drivers such as resource availability and disturbance. However, whether there is synchronisation of these strategies at the entire community level is unclear. Here, we combine trait data for 2800 above- and belowground taxa from 14 trophic guilds spanning a disturbance and resource availability gradient in German grasslands. The results indicate that most guilds consistently respond to these drivers through both direct and trophically mediated effects, resulting in a ‘slow-fast’ axis at the level of the entire community. Using 15 indicators of carbon and nutrient fluxes, biomass production and decomposition, we also show that fast trait communities are associated with faster rates of ecosystem functioning. These findings demonstrate that ‘slow’ and ‘fast’ strategies can be manifested at the level of whole communities, opening new avenues of ecosystem-level functional classification. KW - General Physics and Astronomy KW - General Biochemistry KW - General Chemistry KW - Multidisciplinary KW - Genetics and Molecular Biology Y1 - 2024 U6 - https://doi.org/10.1038/s41467-024-45113-5 SN - 2041-1723 VL - 15 IS - 1 ER - TY - GEN A1 - Haddadi Esfahani, Ali A1 - Dyka, Zoya A1 - Ortmann, Steffen A1 - Langendörfer, Peter T1 - Impact of Data Preparation in Freezing of Gait Detection using Feature-Less Recurrent Neural Network T2 - IEEE Access Y1 - 2021 U6 - https://doi.org/10.1109/ACCESS.2021.3117543 SN - 2169-3536 IS - 9 SP - 138120 EP - 138131 ER - TY - GEN A1 - Jung, Conrad H. G. A1 - Waldeck, Peter A1 - Petrick, Ingolf A1 - Akinwunmi, Mosunmol A1 - Braune, Steffen A1 - Jung, Friedrich A1 - Küpper, Jan-Heiner T1 - Light-induced changes in the morphology and fluorescence of Arthrospira platensis T2 - Clinical Hemorheology and Microcirculation N2 - The cyanobacterium Arthrospira platensis is a well-known source of bioactive substances. Growth and the generation of bioactive ingredients of Arthrospira platensis depend mainly on the quantity of light in a controlled environment. Photoinhibition is a time, nutrient, and light intensity-dependent decrease in photosynthetic efficiency. However, too strong illumination can induce two harmful effects: (1) photoinhibition as a reduction in photosynthetic rate and (2) photooxidation which can have lethal effects on the cells, and which can lead to total loss of the culture. The results of this microscopical study demonstrate, that under the procedures described and very high photon flux den-sities, not only a decrease in the photosynthetic efficiency but beyond, also destruction of Arthrospira platensis can occur. KW - Arthrospira platensis KW - light stress KW - photoinhibition KW - phototoxicity KW - morphology KW - fluorescence Y1 - 2023 UR - https://content.iospress.com/articles/journal-of-cellular-biotechnology/jcb239001 U6 - https://doi.org/10.3233/JCB-239001 SN - 1386-0291 VL - 9 IS - 1 SP - 71 EP - 77 ER - TY - GEN A1 - Nghinaunye, Theopolina A1 - Waldeck, Peter A1 - Jung, Conrad H. G. A1 - Küpper, Jan-Heiner A1 - Jung, Friedrich A1 - Braune, Steffen T1 - Response of Arthrospira platensis to different temperatures regarding growth and biochemical composition T2 - Clinical Hemorheology and Microcirculation N2 - The growth of cyanobacteria can vary considerably depending on the ambient temperature. Since the optimal growth temperature for Arthrospira platensis (strain SAG21.99) is not yet known, this was investigated in the present study. The study revealed that a process temperature of 30°C seems to be optimal for the Arthrospira strain SAG21.99 cultivation in terms of a maximum biomass productivity. This was also true for the phycocyanin content which was at 30°C significantly higher than at 20 or 40°C. KW - Arthrospira platensis KW - growth KW - temperature KW - bioreactor Y1 - 2023 UR - https://content.iospress.com/articles/clinical-hemorheology-and-microcirculation/ch238104 U6 - https://doi.org/10.3233/CH-238104 SN - 1386-0291 SP - 1 EP - 7 ER - TY - GEN A1 - Jung, Conrad H. G. A1 - Nghinaunye, Theopolina A1 - Waldeck, Peter A1 - Braune, Steffen A1 - Petrick, Ingolf A1 - Küpper, Jan-Heiner A1 - Jung, Friedrich T1 - Decarbonization of Arthrospira platensis production by using atmospheric CO2 as an exclusive carbon source: proof of principle T2 - International Journal of Environmental Science and Technology N2 - There is an urgent need to develop technologies for removing CO2 from the atmosphere to combat climate change. Microalgae and cyanobacteria, such as Arthrospira platensis (AP), have shown promise due to their high photoautotrophic biomass production. Conventional AP culture media are supplemented with high concentrations of NaHCO3 since AP utilizes as a carbon source. These culture conditions result in significant amounts of CO2 escaping into the atmosphere, instead of being sequestered during cultivation. Here, we investigated whether ambient air (0.042% CO2) can be used for growing AP in a culture medium lacking a fossil-based carbon source. AP was cultured in 2 L glass bioreactors containing: (1) Zarrouk medium with 16.8 g/L NaHCO3 and aeration with 0.236 vvm air with 2% CO2 (“NaHCO3/CO2-based”) to compensate carbon loss due to CO2 outgassing, and (2) Zarrouk medium without NaHCO3 and a gas flow with ambient air (0.926 vvm) as the only carbon source (“air-based”). The air-based production resulted in the biofixation of 3.78 gCO2/L during the linear growth phase. With NaHCO3/CO2-based production, a comparable amount of 3.42 gCO2/L was obtained while 659.12 g of CO2 was released into the atmosphere. Total protein, phycocyanin, chlorophyll-a, and carotenoids were present in similar or increased amounts in AP produced by the air-based method. We concluded that cultivation of AP with Zarrouk medium lacking NaHCO3 but using ambient air with atmospheric CO2 as the only carbon source is possible without reducing productivity. These results improve our understanding of how atmospheric CO2 can be reduced by culturing AP. KW - Arthrospira platensis KW - Atmospheric CO2 KW - Biomass production KW - Climate change KW - Carbon capturing KW - Decarbonization Y1 - 2023 UR - https://link.springer.com/article/10.1007/s13762-023-05215-x#citeas U6 - https://doi.org/10.1007/s13762-023-05215-x SN - 1735-2630 ER - TY - GEN A1 - Pidvalnyi, Illia A1 - Kostenko, Anna A1 - Sudakov, Oleksandr A1 - Isaev, Dmytro A1 - Maximyuk, Oleksandr A1 - Krishtal, Oleg A1 - Iegorova, Olena A1 - Kabin, Ievgen A1 - Dyka, Zoya A1 - Ortmann, Steffen A1 - Langendörfer, Peter T1 - Classification of epileptic seizures by simple machine learning techniques : application to animals’ electroencephalography signals T2 - IEEE access N2 - Detection and prediction of the onset of seizures are among the most challenging problems in epilepsy diagnostics and treatment. Small electronic devices capable of doing that will improve the quality of life for epilepsy patients while also open new opportunities for pharmacological intervention. This paper presents a novel approach using machine learning techniques to detect seizures onset using intracranial electroencephalography (EEG) signals. The proposed approach was tested on intracranial EEG data recorded in rats with pilocarpine model of temporal lobe epilepsy. A principal component analysis was applied for feature selection before using a support vector machine for the detection of seizures. Hjorth’s parameters and Daubechies discrete wavelet transform coefficients were found to be the most informative features of EEG data. We found that the support vector machine approach had a classification sensitivity of 90% and a specificity of 74% for detecting ictal episodes. Changing the epoch parameter from one to twenty-one seconds results in changing the redistribution of principal components’ values to 10% but does not affect the classification result. Support vector machines are accessible and convenient methods for classification that have achieved promising classification quality, and are rather lightweight compared to other machine learning methods. So we suggest their future use in mobile devices for early epileptic seizure and preictal episode detection. KW - Epilepsy KW - Single-channel intracranial encephalographic data KW - PCA KW - SVM KW - Automated system KW - Rats Y1 - 2025 U6 - https://doi.org/10.1109/ACCESS.2025.3527866 SN - 2169-3536 VL - 13 SP - 8951 EP - 8962 PB - Institute of Electrical and Electronics Engineers (IEEE) CY - Piscataway, NJ ER -