TY - GEN A1 - Blätke, Mary-Ann A1 - Dittrich, Anna A1 - Rohr, Christian A1 - Heiner, Monika A1 - Schaper, Fred A1 - Marwan, Wolfgang T1 - JAK/STAT signalling - an executable model assembled from molecule-centred modules demonstrating a module-oriented database concept for systems and synthetic biology T2 - Molecular BioSystems Y1 - 2013 U6 - https://doi.org/10.1039/C3MB25593J SN - 1742-2051 VL - 9 IS - 6 SP - 1290 EP - 1307 ER - TY - CHAP A1 - Blätke, Mary-Ann A1 - Heiner, Monika A1 - Marwan, Wolfgang ED - Robeva, Raina S. T1 - BioModel Engineering with Petri Nets T2 - Algebraic and Discrete Mathematical Methods for Modern Biology Y1 - 2015 UR - http://store.elsevier.com/product.jsp?isbn=9780128012130 SN - 978-0-12-801213-0 SP - 141 EP - 193 PB - Elsevier CY - Amsterdam [u.a.] ER - TY - CHAP A1 - Blätke, Mary-Ann A1 - Rohr, Christian A1 - Heiner, Monika A1 - Marwan, Wolfgang ED - Benner, Peter T1 - A Petri Net based Framework for Biomodel Engineering T2 - Large-Scale Networks in Engineering and Life Sciences KW - Automatic network reconstruction KW - Biomodel engineering KW - Dynamic systems modelling KW - Modular modelling KW - Petri nets KW - Molecular regulatory networks KW - Reverse engineering Y1 - 2014 SN - 978-3-319-08436-7 U6 - https://doi.org/10.1007/978-3-319-08437-4_6 SP - 317 EP - 366 PB - Springer CY - Heidelberg ER - TY - GEN A1 - Liu, Fei A1 - Blätke, Mary-Ann A1 - Heiner, Monika A1 - Yang, Ming T1 - Modelling and simulating reaction–diffusion systems using coloured Petri nets T2 - Computers in Biology and Medicine Y1 - 2014 UR - http://www.sciencedirect.com/science/article/pii/S0010482514001693 U6 - https://doi.org/10.1016/j.compbiomed.2014.07.004 SN - 0010-4825 VL - 53 SP - 297 EP - 308 ER - TY - CHAP A1 - Blätke, Mary-Ann A1 - Rohr, Christian ED - Heiner, Monika ED - Wagler, Annegret K. T1 - A Colored Petri net approach for spatial Biomodel Engineering based on the modular model composition framework Biomodelkit T2 - Proceedings of the 6th International Workshop on Biological Processes & Petri Nets (BioPPN 2015), Brussels, Belgium, June 22, 2015 Y1 - 2015 UR - http://ceur-ws.org/Vol-1373/ N1 - peer reviewed SP - 37 EP - 54 ER - TY - GEN A1 - Blätke, Mary-Ann A1 - Rohr, Christian T1 - BioModelKit: Spatial Modelling of Complex Multiscale Molecular Biosystems based on Modular Models T2 - Fundamenta Informaticae Y1 - 2018 U6 - https://doi.org/10.3233/FI-2018-1682 SN - 1875-8681 SN - 0169-2968 VL - 160 IS - 1-2 SP - 221 EP - 254 ER -