TY - GEN A1 - Gao, Quian A1 - Gilbert, David A1 - Heiner, Monika A1 - Liu, Fei A1 - Maccagnola, Daniele A1 - Tree, David T1 - Multiscale Modelling and Analysis of Planar Cell Polarity in the Drosophila Wing T2 - IEEE/ACM Transactions on Computational Biology and Bioinformatics Y1 - 2013 U6 - https://doi.org/10.1109/TCBB.2012.101 SN - 1545-5963 VL - 10 IS - 2 SP - 337 EP - 351 ER - TY - GEN A1 - Gilbert, David A1 - Breitling, Rainer A1 - Heiner, Monika A1 - Donaldson, Robin T1 - An Introduction to BioModel Engineering, Illustrated for Signal Transduction Pathways KW - Petri Nets Y1 - 2009 ER - TY - CHAP A1 - Heiner, Monika A1 - Breitling, Rainer A1 - Gilbert, David A1 - Priami, C. T1 - Formal Methods in Molecular Biology KW - Petri Nets Y1 - 2009 UR - http://drops.dagstuhl.de/portals/index.php?semnr=09091 ER - TY - CHAP A1 - Lehrack, Sebastian A1 - Gilbert, David A1 - Heiner, Monika T1 - A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets Y1 - 2007 ER - TY - CHAP A1 - Heiner, Monika A1 - Donaldson, Robin A1 - Gilbert, David ED - Iyengar, M. Sriram T1 - Petri Nets for Systems Biology T2 - Symbolic systems biology Y1 - 2009 UR - http://www.jblearning.com/catalog/9780763753702/ SN - 978-0-7637-5370-2 PB - Jones and Bartlett Learning CY - Sudbury, Mass. [u.a.] ER - TY - CHAP A1 - Heiner, Monika A1 - Gilbert, David A1 - Breitling, Rainer A1 - Orton, Richard T1 - Computation modelling of kinase signalling cascades Y1 - 2010 UR - http://www.springerlink.com/content/w737003v17214214/#section=761974%26page=1 ER - TY - CHAP A1 - Heiner, Monika A1 - Gilbert, David T1 - How Might Petri Nets Enhance Your Systems Biology Toolkit Y1 - 2011 UR - http://www.springerlink.com/content/t21n70p613h75m64/ ER - TY - CHAP A1 - Heiner, Monika A1 - Gilbert, David A1 - Donaldson, Robin T1 - Petri Nets for Systems and Synthetic Biology Y1 - 2008 UR - http://www.springerlink.com/content/j115442q6518j330/ ER - TY - CHAP A1 - Heiner, Monika A1 - Lehrack, Sebastian A1 - Gilbert, David A1 - Marwan, Wolfgang T1 - Extended Stochastic Petri Nets for Model-based Design of Wetlab Experiments T2 - Transactions on Computational Systems Biology XI Y1 - 2009 UR - http://www.springerlink.com/content/5u8h68411657x827/?p=e806216818924093ad3bc526c8b3604d&pi=0 SN - 978-3-642-04185-3 SP - 138 EP - 163 PB - Springer CY - Berlin [u.a.] ER - TY - GEN A1 - Breitling, Rainer A1 - Gilbert, David A1 - Heiner, Monika A1 - Orton, Richard T1 - A structured approach for the engineering of biochemical network models, illustrated for signalling pathways T2 - Briefings in Bioinformatics Y1 - 2008 U6 - https://doi.org/10.1093/bib/bbn026 SN - 1477-4054 VL - 9 IS - 5 SP - 404 EP - 421 ER - TY - GEN A1 - Heiner, Monika A1 - Gilbert, David T1 - BioModel Engineering for Multiscale Systems Biology T2 - Progress in Biophysics and Molecular Biology Y1 - 2013 UR - http://www.sciencedirect.com/science/article/pii/S0079610712001071?v=s5 U6 - https://doi.org/10.1016/j.pbiomolbio.2012.10.001 SN - 1873-1732 VL - 111 IS - 2-3 SP - 119 EP - 128 ER - TY - CHAP A1 - Heiner, Monika A1 - Breitling, Rainer A1 - Donaldson, Robin A1 - Gilbert, David T1 - Biomodel Engineering - From Structure to Behavior T2 - Transactions on Computational Systems Biology XII : Special Issue on Modeling Methodologies Y1 - 2010 SN - 978-3-642-11711-4 SN - 978-3-642-11712-1 U6 - https://doi.org/10.1007/978-3-642-11712-1 SP - 1 EP - 12 PB - Springer CY - Berlin [u.a.] ER - TY - GEN A1 - Pârvu, Ovidiu A1 - Gilbert, David A1 - Heiner, Monika A1 - Liu, Fei A1 - Saunders, Nigel A1 - Shaw, Simon T1 - Spatial-temporal modelling and analysis of bacterial colonies with phase variable genes T2 - ACM Transactions on Modeling and Computer Simulation (TOMACS) Y1 - 2015 UR - http://dl.acm.org/citation.cfm?id=2742546 U6 - https://doi.org/10.1145/2742546 SN - 1558-1195 SN - 1049-3301 VL - 25 IS - 2 SP - 13 ER - TY - GEN A1 - Gilbert, David A1 - Heiner, Monika T1 - Preface Advances in Computational Methods in Systems Biology T2 - Theoretical Computer Science Y1 - 2015 U6 - https://doi.org/doi:10.1016/j.tcs.2015.08.013 SN - 0304-3975 VL - 599 SP - 2 EP - 3 ER - TY - CHAP A1 - Parvu, Ovidiu A1 - Gilbert, David A1 - Heiner, Monika A1 - Liu, Fei A1 - Saunders, Nigel ED - Gupta, Ashutosh ED - Henzinger, Thomas A. T1 - Modelling and Analysis of Phase Variation in Bacterial Colony Growth T2 - Computational Methods in Systems Biology, 11th International Conference, CMSB 2013, Klosterneuburg, Austria, September 22-24, 2013 Y1 - 2013 SN - 978-3-642-40707-9 U6 - https://doi.org/10.1007/978-3-642-40708-6_7 N1 - referiert SP - 78 EP - 91 PB - Springer CY - Berlin [u.a.] ER - TY - CHAP A1 - Gilbert, David A1 - Heiner, Monika A1 - Liu, Fei A1 - Saunders, Nigel T1 - Colouring Space - A Coloured Framework for Spatial Modelling in Systems Biology T2 - Application and Theory of Petri Nets and Concurrency, 34th International Conference, PETRI NETS 2013, Milan, Italy, June 24-28, 2013 Y1 - 2013 UR - http://link.springer.com/chapter/10.1007%2F978-3-642-38697-8_13 N1 - referiert SP - 230 EP - 249 PB - Springer CY - Berlin [u.a.] ER - TY - GEN A1 - Liu, Fei A1 - Heiner, Monika A1 - Gilbert, David T1 - Coloured Petri nets for multilevel, multiscale and multidimensional modelling of biological systems T2 - Briefings in Bioinformatics Y1 - 2019 U6 - https://doi.org/10.1093/bib/bbx150 SN - 1477-4054 SN - 1467-5463 VL - 20 IS - 3 SP - 877 EP - 886 ER - TY - GEN A1 - Gilbert, David A1 - Heiner, Monika A1 - Jayaweera, Yasoda A1 - Rohr, Christian T1 - Towards dynamic genome scale models T2 - Briefings in Bioinformatics Y1 - 2019 U6 - https://doi.org/10.1093/bib/bbx096 SN - 1477-4054 SN - 1467-5463 VL - 20 IS - 4 SP - 1167 EP - 1180 ER - TY - GEN A1 - Gilbert, David A1 - Heiner, Monika A1 - Ghanbar, Leila T1 - Personalised models for human – gut microbiota interaction T2 - PeerJ preprints Y1 - 2017 UR - https://peerj.com/preprints/3267/ U6 - https://doi.org/10.7287/peerj.preprints.3267v1 SN - 2167-9843 VL - 5 IS - e3267v1 ER - TY - GEN A1 - Gilbert, David A1 - Heiner, Monika A1 - Rohr, Christian T1 - Petri-net-based 2D Design of DNA Walker Circuits T2 - Natural Computing Y1 - 2018 U6 - https://doi.org/10.1007/s11047-018-9671-4 SN - 1572-9796 SN - 1567-7818 VL - 17 IS - 1 SP - 161 EP - 182 ER -