@incollection{HeinerGilbertBreitlingetal., author = {Heiner, Monika and Gilbert, David and Breitling, Rainer and Orton, Richard}, title = {Computation modelling of kinase signalling cascades}, language = {en} } @misc{SchwarickTovchigrechko, author = {Schwarick, Martin and Tovchigrechko, Alexey A.}, title = {IDD-based model validation of biochemical networks}, series = {Theoretical Computer Science}, volume = {412}, journal = {Theoretical Computer Science}, number = {26}, issn = {0304-3975}, doi = {10.1016/j.tcs.2010.06.030}, pages = {2884 -- 2908}, language = {en} } @incollection{HeinerBreitlingDonaldsonetal., author = {Heiner, Monika and Breitling, Rainer and Donaldson, Robin and Gilbert, David}, title = {Biomodel Engineering - From Structure to Behavior}, series = {Transactions on Computational Systems Biology XII : Special Issue on Modeling Methodologies}, booktitle = {Transactions on Computational Systems Biology XII : Special Issue on Modeling Methodologies}, publisher = {Springer}, address = {Berlin [u.a.]}, isbn = {978-3-642-11711-4}, doi = {10.1007/978-3-642-11712-1}, pages = {1 -- 12}, language = {en} } @misc{HeinerSriram, author = {Heiner, Monika and Sriram, K.}, title = {Structural Analysis to Determine the Core of Hypoxia Response Network}, series = {PLoS ONE}, volume = {5}, journal = {PLoS ONE}, number = {1}, issn = {1932-6203}, doi = {10.1371/journal.pone.0008600}, language = {en} } @misc{RohrMarwanHeiner, author = {Rohr, Christian and Marwan, Wolfgang and Heiner, Monika}, title = {Snoopy - a unifying Petri net framework to investigate biomolecular networks}, series = {Bioinformatics}, volume = {26}, journal = {Bioinformatics}, number = {7}, issn = {1460-2059}, pages = {974 -- 975}, language = {en} } @misc{HeinerSoliman, author = {Heiner, Monika and Soliman, Sylvain}, title = {A Unique Transformation from Ordinary Differential Equations to Reaction Networks}, series = {PLoS one}, volume = {5}, journal = {PLoS one}, number = {12}, issn = {1932-6203}, doi = {10.1371/journal.pone.0014284}, language = {en} } @inproceedings{HeinerRohrSchwaricketal., author = {Heiner, Monika and Rohr, Christian and Schwarick, Martin and Streif, Stefan}, title = {A Comparative Study of Stochastic Analysis Techniques}, series = {CMSB '10, 8th Conference on Computational Methods in Systems Biology, Trento, Italy — September 29 - October 01, 2010}, booktitle = {CMSB '10, 8th Conference on Computational Methods in Systems Biology, Trento, Italy — September 29 - October 01, 2010}, editor = {Quaglia, Paola}, publisher = {ACM}, address = {New York, NY}, isbn = {978-1-4503-0068-1}, doi = {10.1145/1839764.1839776}, pages = {96 -- 106}, language = {en} } @inproceedings{LiuHeiner, author = {Liu, Fei and Heiner, Monika}, title = {Coloured Petri Nets to Model and simulate Biological Systems}, series = {Proceedings of the Workshops of the 31st International Conference on Application and Theory of Petri Nets and Other Models of Concurrency (PETRI NETS 2010)}, booktitle = {Proceedings of the Workshops of the 31st International Conference on Application and Theory of Petri Nets and Other Models of Concurrency (PETRI NETS 2010)}, pages = {70 -- 84}, language = {en} }