@misc{RoggenbuckReinholdWerneretal., author = {Roggenbuck, Dirk and Reinhold, Dirk and Werner, Leal and Schierack, Peter and Bogdanos, Dimitrios Petrou and Conrad, Karsten}, title = {Glycoprotein 2 antibodies in Crohn's disease.}, series = {Advances in Clinical Chemistry}, volume = {60}, journal = {Advances in Clinical Chemistry}, issn = {0065-2423}, pages = {187 -- 208}, language = {en} } @misc{BednorzOelschlaegerKinnemannetal., author = {Bednorz, Carmen and Oelschlaeger, Kathrin and Kinnemann, Bianca and Hartmann, Susanne and Neumann, Konrad and Pieper, Robert and Bethe, Astrid and Semmler, Torsten and Tedin, Karsten and Schierack, Peter and Wieler, Lothar H. and Guenther, Sebastian}, title = {The broader context of antibiotic resistance: zinc feed supplementation of piglets increases the proportion of multi-resistant Escherichia coli in vivo}, series = {International Journal of Medical Microbiology}, volume = {303}, journal = {International Journal of Medical Microbiology}, number = {6-7}, issn = {1618-0607}, doi = {10.1016/j.ijmm.2013.06.004}, pages = {396 -- 403}, language = {en} } @misc{FroemmelLehmannRoedigeretal., author = {Fr{\"o}mmel, Ulrike and Lehmann, Werner and R{\"o}diger, Stefan and B{\"o}hm, Alexander and Nitschke, J{\"o}rg and Weinreich, J{\"o}rg and Groß, Julia and Roggenbuck, Dirk and Zinke, Olaf and Ansorge, Hermann and Vogel, Steffen and Klemm, Per and Wex, Thomas and Schr{\"o}der, Christian and Wieler, Lothar H. and Schierack, Peter}, title = {Adhesion of human and animal Escherichia coli strains in association with their virulence-associated genes and phylogenetic origins}, series = {Applied and environmental microbiology}, volume = {79}, journal = {Applied and environmental microbiology}, number = {19}, issn = {1098-5336}, doi = {10.1128/AEM.01384-13}, pages = {5814 -- 5829}, abstract = {Intestinal colonization is influenced by the ability of the bacterium to inhabit a niche, which is based on the expression of colonization factors. Escherichia coli carries a broad range of virulence-associated genes (VAGs) which contribute to intestinal (inVAGs) and extraintestinal (exVAGs) infection. Moreover, initial evidence indicates that inVAGs and exVAGs support intestinal colonization. We developed new screening tools to genotypically and phenotypically characterize E. coli isolates originating in humans, domestic pigs, and 17 wild mammal and avian species. We analyzed 317 isolates for the occurrence of 44 VAGs using a novel multiplex PCR microbead assay (MPMA) and for adhesion to four epithelial cell lines using a new adhesion assay. We correlated data for the definition of new adhesion genes. inVAGs were identified only sporadically, particularly in roe deer (Capreolus capreolus) and the European hedgehog ( Erinaceus europaeus). The prevalence of exVAGs depended on isolation from a specific host. Human uropathogenic E. coli isolates carried exVAGs with the highest prevalence, followed by badger (Meles meles) and roe deer isolates. Adhesion was found to be very diverse. Adhesion was specific to cells, host, and tissue, though it was also unspecific. Occurrence of the following VAGs was associated with a higher rate of adhesion to one or more cell lines: afa-dra, daaD, tsh, vat, ibeA, fyuA, mat, sfa-foc, malX, pic, irp2, and papC. In summary, we established new screening methods which enabled us to characterize large numbers of E. coli isolates. We defined reservoirs for potential pathogenic E. coli. We also identified a very broad range of colonization strategies and defined potential new adhesion genes.}, language = {en} } @misc{RoggenbuckHiemannSchieracketal., author = {Roggenbuck, Dirk and Hiemann, Rico and Schierack, Peter and Reinhold, Dirk and Conrad, Karsten}, title = {Digital immunofluorescence enables automated detection of antinuclear antibody endpoint titers avoiding serial dilution}, series = {Clinical Chemistry and Laboratory Medicine}, volume = {52}, journal = {Clinical Chemistry and Laboratory Medicine}, number = {2}, issn = {1437-4331}, doi = {10.1515/cclm-2013-0543}, pages = {e9 -- e11}, language = {en} } @misc{WillitzkiLorenzHiemannetal., author = {Willitzki, Annika and Lorenz, Sebastian and Hiemann, Rico and Guttek, Karina and Goihl, Alexander and Hartig, Roland and Conrad, Karsten and Feist, Eugen and Sack, Ulrich and Schierack, Peter and Heiserich, Lisa and Eberle, Caroline and Peters, Vanessa and Roggenbuck, Dirk and Reinhold, Dirk}, title = {Fully automated analysis of chemically induced γH2AX foci in human peripheral blood mononuclear cells by indirect immunofluorescence}, series = {Cytometry Part A}, volume = {83}, journal = {Cytometry Part A}, number = {11}, issn = {1552-4930}, doi = {10.1002/cyto.a.22350}, pages = {1017 -- 1026}, language = {en} } @misc{BednorzGuentherOelschlaegeretal., author = {Bednorz, Carmen and Guenther, Sebastian and Oelschlaeger, Kathrin and Pieper, Robert and Hartmann, Susanne and Tedin, Karsten and Semmler, Torsten and Neumann, Konrad and Schierack, Peter and Bethe, Astrid and Wieler, Lothar H. and Kinnemann, Bianca}, title = {Feeding the Probiotic Enterococcus faecium Strain NCIMB 10415 to Piglets Specifically Reduces the Number of Escherichia coli Pathotypes That Adhere to the Gut Mucosa}, series = {Applied and Environmental Microbiology}, volume = {79}, journal = {Applied and Environmental Microbiology}, number = {24}, issn = {0099-2240}, doi = {10.1128/AEM.03138-13}, pages = {7896 -- 7904}, language = {en} } @misc{FroemmelBoehmNitschkeetal., author = {Fr{\"o}mmel, Ulrike and B{\"o}hm, Alexander and Nitschke, J{\"o}rg and Weinreich, J{\"o}rg and Groß, Julia and R{\"o}diger, Stefan and Wex, Thomas and Ansorge, Hermann and Zinke, Olaf and Schr{\"o}der, Christian and Roggenbuck, Dirk and Schierack, Peter}, title = {Adhesion patterns of commensal and pathogenic Escherichia coli from humans and wild animals on human and porcine epithelial cell lines}, series = {Gut Pathogens}, volume = {5}, journal = {Gut Pathogens}, number = {31}, issn = {1757-4749}, doi = {10.1186/1757-4749-5-31}, pages = {8}, abstract = {Abstract BACKGROUND: Different strategies of colonization or infection by E. coli result in formation of certain adhesion patterns which help also in classifying intestinal E. coli into pathotypes. Little is known about adhesion patterns and host- and tissue adaption of commensal E. coli and about E. coli originating in clinically healthy hosts carrying pathotype-specific virulence-associated genes. FINDINGS: Adhesion pattern of E. coli (n = 282) from humans and from 18 animal species were verified on intestinal human Caco-2 and porcine IPEC-J2 cells and, furthermore, for comparison on human urinary bladder 5637, porcine kidney PK-15 epithelial and HEp-2 cells. The analysis was carried out on 150,000 images of adhesion assays.Adhesion patterns were very diverse; 88 isolates were completely non-adherent, whereas 194 adhered to at least one cell line with the dominant adhesion patterns "diffusely distributed" and "microcolony formation". Adhesion patterns "chains" and "clumps" were also visible. Chain formation was mediated by the presence of epithelial cells. Clump formation was very specific on only the 5637 cell line. All enteropathogenic (eae+) E. coli (EPEC; n = 14) were able to form microcolonies which was cell line specific for each isolate. Most EPEC formed microcolonies on intestinal IPEC-J2 and Caco-2 but several also on urinary tract cells. Shigatoxin-producing (stx+) E. coli (n = 10) showed no specific adhesion patterns. CONCLUSIONS: E. coli isolates were highly diverse. Commensal and pathogenic isolates can adhere in various forms, including diffuse distribution, microcolonies, chains and clumps. Microcolony formation seems to be a global adhesion strategy also for commensal E. coli.}, language = {en} } @misc{GrossmannRoggenbuckSchroederetal., author = {Großmann, Kai and Roggenbuck, Dirk and Schr{\"o}der, Christian and Conrad, Karsten and Schierack, Peter and Sack, Ulrich}, title = {Multiplex assessment of non-organ-specific autoantibodies with a novel microbead-based immunoassay}, series = {Cytometry Part A}, volume = {79}, journal = {Cytometry Part A}, number = {2}, issn = {1552-4922}, doi = {10.1002/cyto.a.21009}, pages = {118 -- 125}, language = {en} } @misc{SchierackKletaTedinetal., author = {Schierack, Peter and Kleta, Sylvia and Tedin, Karsten and Babila, T. B. and Oswald, S. and Oelschlaeger, T. A. and Hiemann, Rico and Paetzold, S. and Wieler, Lothar H.}, title = {E. coli Nissle 1917 affects Salmonella adhesion to porcine intestinal epithelial cells}, series = {PLoS One}, volume = {6}, journal = {PLoS One}, number = {2}, doi = {10.1371/journal.pone.0014712}, pages = {10}, language = {en} } @misc{RoedigerRuhlandSchroederetal., author = {R{\"o}diger, Stefan and Ruhland, Mirko and Schr{\"o}der, Christian and Großmann, Kai and B{\"o}hm, Alexander and Nitschke, J{\"o}rg and Berger, Ingo and Schimke, Ingolf and Schierack, Peter}, title = {Fluorescence dye adsorption assay to quantify carboxyl groups on the surface of poly(methyl methacrylate) microbeads}, series = {Analytical Chemistry}, volume = {83}, journal = {Analytical Chemistry}, number = {9}, issn = {0003-2700}, doi = {10.1021/ac103277s}, pages = {3379 -- 3385}, language = {en} } @misc{SchierackWeinreichEwersetal., author = {Schierack, Peter and Weinreich, J{\"o}rg and Ewers, Christa and Tachu, Babila and Nicholson, Bryon and Barth, Stefanie}, title = {Hemolytic porcine intestinal E. coli without virulence-associated genes typical for intestinal pathogenic E. coli}, series = {Applied and environmental microbiology}, volume = {77}, journal = {Applied and environmental microbiology}, number = {23}, issn = {1098-5336}, doi = {10.1128/AEM.05289-11}, pages = {8451 -- 8455}, language = {en} } @misc{RoemerWielerSchierack, author = {R{\"o}mer, Antje and Wieler, Lothar H. and Schierack, Peter}, title = {Analyses of intestinal commensal Escherichia coli strains from wild boars suggest adaptation to conventional pig production conditions}, series = {Veterinary Microbiology}, volume = {16}, journal = {Veterinary Microbiology}, number = {1-2}, issn = {0378-1135}, doi = {10.1016/j.vetmic.2012.07.009}, pages = {122 -- 129}, language = {en} } @incollection{RoedigerSchierackBoehmetal., author = {R{\"o}diger, Stefan and Schierack, Peter and B{\"o}hm, Alexander and Nitschke, J{\"o}rg and Berger, Ingo and Fr{\"o}mmel, Ulrike and Schmidt, Carsten and Ruhland, Mirko and Schimke, Ingolf and Roggenbuck, Dirk and Lehmann, Werner and Schr{\"o}der, Christian}, title = {A highly versatile microscope imaging technology platform for the multiplex real-time detection of biomolecules and autoimmune antibodies}, series = {Molecular diagnostics}, booktitle = {Molecular diagnostics}, editor = {Seitz, Harald and Berger, Ingo}, publisher = {Springer}, address = {Berlin [u.a.]}, isbn = {978-3-642-37690-0}, pages = {35 -- 74}, language = {en} } @misc{RoggenbuckGoihlHanacketal., author = {Roggenbuck, Dirk and Goihl, Alexander and Hanack, Katja and Holzl{\"o}hner, Pamela and Hentschel, Christian and Veiczi, Miklos and Schierack, Peter and Reinhold, Dirk and Schulz, Hans-Ulrich}, title = {Serological diagnosis and prognosis of severe acute pancreatitis by analysis of serum glycoprotein 2}, series = {Clinical Chemistry and Laboratory Medicine}, volume = {55}, journal = {Clinical Chemistry and Laboratory Medicine}, number = {6}, issn = {1437-4331}, doi = {10.1515/cclm-2016-0797}, pages = {854 -- 864}, language = {en} } @misc{DurkalecKolendaOwczareketal., author = {Durkalec, Maciej and Kolenda, Rafał and Owczarek, Tomasz and Szkoda, J{\´o}zef and Nawrocka, Agnieszka and Grzegrzolka, Jędrzej and Dziegiel, Piotr and Socha, Piotr and Kolacz, Roman and Schierack, Peter and Zmudzki, Jan and Posyniak, Andrzej}, title = {Expression of metallothionein in the liver and kidneys of the red deer (Cervus elaphus L.) from an industrial metal smelting area of Poland}, series = {Ecotoxicology and Environmental Safety}, volume = {137}, journal = {Ecotoxicology and Environmental Safety}, issn = {1090-2414}, doi = {10.1016/j.ecoenv.2016.11.018}, pages = {121 -- 129}, language = {en} } @misc{GrzymajloUgorskiSuchanskietal., author = {Grzymajlo, Krzysztof and Ugorski, Maciej and Suchanski, Jaroslaw and Kedzierska, Anna E. and Kolenda, Rafał and Jarzab, Anna and Biernatowska, Agnieszka and Schierack, Peter}, title = {The Novel Type 1 Fimbriae FimH Receptor Calreticulin Plays a Role in Salmonella Host Specificity}, series = {Frontiers in Cellular and Infection Microbiology}, volume = {7}, journal = {Frontiers in Cellular and Infection Microbiology}, issn = {2235-2988}, doi = {10.3389/fcimb.2017.00326}, pages = {15}, language = {en} } @misc{MohsinRazaSchaufleretal., author = {Mohsin, Mashkoor and Raza, Shahbaz and Schaufler, Katharina and Roschanski, Nicole and Sarwar, Fatima and Semmler, Torsten and Schierack, Peter and Guenther, Sebastian}, title = {High Prevalence of CTX-M-15-Type ESBL-Producing E. coli from Migratory Avian Species in Pakistan}, series = {Frontiers in microbiology}, volume = {8}, journal = {Frontiers in microbiology}, number = {2476}, issn = {1664-302X}, doi = {10.3389/fmicb.2017.02476}, pages = {9}, language = {en} } @misc{ZhangLuoWuetal., author = {Zhang, Shulan and Luo, Jing and Wu, Ziyan and Roggenbuck, Dirk and Schierack, Peter and Reinhold, Dirk and Li, Ji and Zeng, Xiaofeng and Zhang, Fengchun and Qian, Jiaming and Li, Yongzhe}, title = {Antibodies against glycoprotein 2 display diagnostic advantages over ASCA in distinguishing CD from intestinal tuberculosis and intestinal Beh{\c{c}}et's disease}, series = {Clinical and Translational Gastroenterology}, volume = {9}, journal = {Clinical and Translational Gastroenterology}, number = {2}, issn = {2155-384X}, doi = {10.1038/ctg.2018.1}, pages = {133}, language = {en} } @misc{SchloerHolzloehnerListeketal., author = {Schl{\"o}r, Anja and Holzl{\"o}hner, Pamela and Listek, Martin and Grieß, Cindy and Butze, Monique and Micheel, Burkhard and Hentschel, Christian and Sowa, Mandy and Roggenbuck, Dirk and Schierack, Peter and F{\"u}ner, Jonas and Schliebs, Erik and Goihl, Alexander and Reinhold, Dirk and Hanack, Katja}, title = {Generation and validation of murine monoclonal and camelid recombinant single domain antibodies specific for human pancreatic glycoprotein 2}, series = {New Biotechnology}, volume = {45}, journal = {New Biotechnology}, issn = {1876-4347}, doi = {10.1016/j.nbt.2018.03.006}, pages = {60 -- 68}, language = {en} } @misc{NalliSommaAndreolietal., author = {Nalli, Cecilia and Somma, Valentina and Andreoli, Laura and B{\"u}ttner, Thomas and Schierack, Peter and Mahler, Michael and Roggenbuck, Dirk and Tincani, Angela}, title = {Anti-phospholipid IgG antibodies detected by line immunoassay differentiate patients with anti-phospholipid syndrome and other autoimmune diseases}, series = {Autoimmunity Highlights}, volume = {9}, journal = {Autoimmunity Highlights}, number = {1}, issn = {2038-3274}, doi = {10.1007/s13317-018-0106-0}, pages = {11}, language = {en} } @misc{RanjanScholzSemmleretal., author = {Ranjan, Amit and Scholz, Julia and Semmler, Torsten and Wieler, Lothar H. and Ewers, Christa and M{\"u}ller, Stefanie and Pickard, Derek J. and Schierack, Peter and Tedin, Karsten and Ahmed, Niyaz and Schaufler, Katharina and Guenther, Sebastian}, title = {ESBL-plasmid carriage in E. coli enhances in vitro bacterial competition fitness and serum resistance in some strains of pandemic sequence types without overall fitness cost}, series = {Gut pathogens}, volume = {10}, journal = {Gut pathogens}, number = {24}, issn = {1757-4749}, doi = {10.1186/s13099-018-0243-z}, pages = {9}, language = {en} } @misc{KolendaBurdukiewiczSchiebeletal., author = {Kolenda, Rafał and Burdukiewicz, Michał and Schiebel, Juliane and R{\"o}diger, Stefan and Sauer, Lysann and Szabo, Istvan and Orlowska, Aleksandra and Weinreich, J{\"o}rg and Nitschke, J{\"o}rg and B{\"o}hm, Alexander and Gerber, Ulrike and Roggenbuck, Dirk and Schierack, Peter}, title = {Adhesion of Salmonella to Pancreatic Secretory Granule Membrane Major Glycoprotein GP2 of Human and Porcine Origin Depends on FimH Sequence Variation}, series = {Frontiers in Microbiology}, volume = {9}, journal = {Frontiers in Microbiology}, number = {1905}, issn = {1664-302X}, doi = {10.3389/fmicb.2018.01905}, pages = {15}, language = {en} } @misc{SowaKolendaBaumgartetal., author = {Sowa, Mandy and Kolenda, Rafał and Baumgart, Daniel C. and Pratschke, Johann and Papp, Maria and Tornai, Tamas and Suchanski, Jaroslaw and Bogdanos, Dimitrios Petrou and Mytilinaiou, Maria G. and Hammermann, Jutta and Laass, Martin W. and Conrad, Karsten and Schramm, Christoph and Franke, Andre and Roggenbuck, Dirk and Schierack, Peter}, title = {Mucosal Autoimmunity to Cell-Bound GP2 Isoforms Is a Sensitive Marker in PSC and Associated With the Clinical Phenotype}, series = {Frontiers in Immunology}, volume = {9}, journal = {Frontiers in Immunology}, number = {1959}, issn = {1664-3224}, doi = {10.3389/fimmu.2018.01959}, language = {en} } @misc{RoggenbuckReinholdSchieracketal., author = {Roggenbuck, Dirk and Reinhold, Dirk and Schierack, Peter and Bogdanos, Dimitrios Petrou and Conrad, Karsten and Laass, Martin W.}, title = {Crohn's disease specific pancreatic antibodies: clinical and pathophysiological challenges}, series = {Clinical Chemistry and Laboratory Medicine}, volume = {52}, journal = {Clinical Chemistry and Laboratory Medicine}, number = {4}, issn = {1437-4331}, doi = {10.1515/cclm-2013-0801}, pages = {494}, language = {en} } @misc{OloweChoudharySchieracketal., author = {Olowe, Olugbenga Adekunle and Choudhary, S. and Schierack, Peter and Wieler, Lothar H. and Makanjuola, O. B. and Olayemi, A. B. and Anjum, M.}, title = {Pathotyping bla CTX-M Escherichia coli from Nigeria}, series = {European Journal of Microbiology and Immunology}, volume = {3}, journal = {European Journal of Microbiology and Immunology}, number = {2}, issn = {2062-8633}, doi = {10.1556/EuJMI.3.2013.2.5}, pages = {120 -- 125}, abstract = {Background: Escherichia coli have become the enterobacteriaceae species most affected by extended-spectrum β-lactamases (ESBLs) in view of the emergence of CTX-M-type ESBLs. These CTX-M-positive E. coli have been reported in numerous regions worldwide. Virulence determinants of already reported CTX-M-positive E. coli were investigated. Methodology: To gain insights into the mechanism underlying this phenomenon, we assessed serogroup, susceptibility pattern and diversity of virulence profiles within a collection of nine blaCTX-M-positive E. coli strains and their virulent determinant using miniaturized DNA microarray techniques. The nine ESBL-positive E. coli isolates were from eight male and one female patient(s) selected for study based on previous work. Virulence potential was inferred by detection of 63 virulence factor (VF) genes. Results: Four (44.4\%) of the 9 E. coli isolates exhibited the same set of core characteristics: serotype O8:Hnt, while all were positive for OXA-1, ciprofloxacin resistance. Five of the isolates exhibited highly similar (91\% to 100\%) VF profiles. Conclusion: The findings describe a broadly disseminated, blaCTX-M-positive and virulent E. coli serogroup with highly homogeneous virulence genotypes, suggesting recent emergence in this zone. Understanding how this clone has emerged and successfully disseminated within the hospital and community, including across national boundaries, should be a public health priority.}, language = {en} } @misc{KletaNordhoffTedinetal., author = {Kleta, Sylvia and Nordhoff, M. and Tedin, Karsten and Wieler, Lothar H. and Kolenda, Rafał and Oswald, S. and Oelschlaeger, T. A. and Bleiss, W. and Schierack, Peter}, title = {Role of F1C fimbriae, flagella, and secreted bacterial components in the inhibitory effect of probiotic Escherichia coli Nissle 1917 on atypical enteropathogenic E. coli infection.}, series = {Infect Immun.}, volume = {82}, journal = {Infect Immun.}, number = {5}, doi = {10.1128/IAI.01431-13}, pages = {1801 -- 1812}, language = {en} } @misc{MaslyanskiyLazarevaOlineketal., author = {Maslyanskiy, Aleksey and Lazareva, Natalya and Olinek, Polina and Schierack, Peter and Hentschel, Christian and Cuccato, Juliane and Bogdanos, Dimitrios Petrou and Lapin, Sergey V. and Roggenbuck, Dirk}, title = {Anti-hnRNP B1 (RA33) Autoantibodies Are Associated with the Clinical Phenotype in Russian Patients with Rheumatoid Arthritis and Systemic Sclerosis}, series = {Journal of Immunology Research}, volume = {2014}, journal = {Journal of Immunology Research}, doi = {10.1155/2014/516593}, pages = {7}, language = {en} } @misc{RoedigerLiebschSchmidtetal., author = {R{\"o}diger, Stefan and Liebsch, Claudia and Schmidt, Carsten and Lehmann, Werner and Resch-Genger, U. and Schedler, Uwe and Schierack, Peter}, title = {Nucleic acid detection based on the use of microbeads: a review}, series = {Microchimica Acta}, volume = {181}, journal = {Microchimica Acta}, number = {11-12}, issn = {0026-3672}, doi = {10.1007/s00604-014-1243-4}, pages = {1151 -- 1168}, language = {en} } @misc{MirskyRoedigerSchieracketal., author = {Mirsky, Vladimir M. and R{\"o}diger, Stefan and Schierack, Peter and Roggenbuck, Dirk}, title = {Preface to the Special Issue on PCR on chip and related technologies}, series = {Microchimica Acta}, volume = {181}, journal = {Microchimica Acta}, number = {13/14}, doi = {10.1007/s00604-014-1246-1}, pages = {1609 -- 1610}, language = {en} } @misc{SowaGrossmannScholzetal., author = {Sowa, Mandy and Großmann, Kai and Scholz, Juliane and R{\"o}ber, Nadja and R{\"o}diger, Stefan and Schierack, Peter and Conrad, Karsten and Roggenbuck, Dirk and Hiemann, Rico}, title = {Der CytoBead-Assay - Eine neue M{\"o}glichkeit der multiparametrischen Autoantik{\"o}rperanalytik bei systemischen Autoimmunerkrankungen}, series = {Journal of Laboratory Medicine}, volume = {38}, journal = {Journal of Laboratory Medicine}, number = {6}, doi = {10.1515/labmed-2014-0041}, pages = {309 -- 317}, language = {de} } @misc{RoggenbuckSommaSchieracketal., author = {Roggenbuck, Dirk and Somma, Valentina and Schierack, Peter and Borghi, Maria Orietta and Meroni, Pier Luigi}, title = {Autoantibody profiling in APS}, series = {Lupus}, volume = {23}, journal = {Lupus}, number = {12}, issn = {0961-2033}, doi = {10.1177/0961203314534305}, pages = {1262 -- 1264}, language = {en} } @misc{SchierackRoedigerKolendaetal., author = {Schierack, Peter and R{\"o}diger, Stefan and Kolenda, Rafał and Hiemann, Rico and Berger, Enrico and Grzymajlo, Krzysztof and Swidsinski, Alexander and Juretzek, Thomas and Meissner, Dirk and Mydlak, Karsten and Reinhold, Dirk and Nolan, Lisa K. and Roggenbuck, Dirk}, title = {Species-specific and pathotype-specific binding of bacteria to zymogen granule membrane glycoprotein 2 (GP2)}, series = {Gut}, volume = {64}, journal = {Gut}, number = {3}, issn = {1468-3288}, doi = {10.1136/gutjnl-2014-307854}, pages = {517 -- 519}, language = {en} } @misc{MohsinGuentherSchieracketal., author = {Mohsin, Mashkoor and Guenther, Sebastian and Schierack, Peter and Tedin, Karsten and Wieler, Lothar H.}, title = {Probiotic Escherichia coli Nissle 1917 reduces growth, Shiga toxin expression, release and thus cytotoxicity of enterohemorrhagic Escherichia coli}, series = {International Journal of Medical Microbiology}, volume = {305}, journal = {International Journal of Medical Microbiology}, number = {1}, issn = {1618-0607}, doi = {10.1016/j.ijmm.2014.10.003}, pages = {20 -- 26}, language = {en} } @misc{SchierackWielerTarasetal., author = {Schierack, Peter and Wieler, Lothar H. and Taras, David and Herwig, Volker and Tachu, Babila and Hlinak, Andreas and Schmidt, Michael F. G. and Scharek, Lydia}, title = {Bacillus cereus var. toyoi enhanced systemic immune response in piglets.}, series = {Veterinary immunology and immunopathology}, volume = {118}, journal = {Veterinary immunology and immunopathology}, number = {1-2}, issn = {1873-2534}, doi = {10.1016/j.vetimm.2007.03.006}, pages = {1 -- 11}, language = {en} } @misc{SchierackWalkReiteretal., author = {Schierack, Peter and Walk, Nicole and Reiter, Katja and Weyrauch, Karl D. and Wieler, Lothar H.}, title = {Composition of intestinal Enterobacteriaceae populations of healthy domestic pigs.}, series = {Microbiology}, volume = {153}, journal = {Microbiology}, number = {11}, issn = {1465-2080}, doi = {10.1099/mic.0.2007/010173-0}, pages = {3830 -- 3837}, language = {en} } @misc{SchierackWalkEwersetal., author = {Schierack, Peter and Walk, Nicole and Ewers, Christa and Wilking, Hendrik and Steinr{\"u}ck, Hartmut and Filter, Matthias and Wieler, Lothar H.}, title = {ExPEC-typical virulence-associated genes correlate with successful colonization by intestinal E. coli in a small piglet group.}, series = {Environmental Microbiology}, volume = {10}, journal = {Environmental Microbiology}, number = {7}, issn = {1462-2920}, doi = {10.1111/j.1462-2920.2008.01595.x}, pages = {1742 -- 1752}, language = {en} } @misc{GuentherSchierackGrobbeletal., author = {Guenther, Sebastian and Schierack, Peter and Grobbel, Mirjam and L{\"u}bke-Becker, Antina and Wieler, Lothar H. and Ewers, Christa}, title = {Real-time PCR assay for the detection of species of the genus Mannheimia.}, series = {Journal of Microbiological Methods}, volume = {75}, journal = {Journal of Microbiological Methods}, number = {1}, issn = {1872-8359}, doi = {10.1016/j.mimet.2008.05.008}, pages = {75 -- 80}, language = {en} } @misc{GuentherNoecklerNickischRosenegketal., author = {Guenther, Sebastian and N{\"o}ckler, Karsten and Nickisch-Rosenegk, Markus von and Landgraf, Maria and Ewers, Christa and Wieler, Lothar H. and Schierack, Peter}, title = {Detection of Trichinella spiralis, T. britovi and T. pseudospiralis in muscle tissue with real-time PCR}, series = {Journal of Microbiological Methods}, volume = {75}, journal = {Journal of Microbiological Methods}, number = {2}, issn = {0167-7012}, doi = {10.1016/j.mimet.2008.06.019}, pages = {287 -- 292}, language = {en} } @misc{GuentherGrothSchieracketal., author = {Guenther, Sebastian and Groth, Ingrid and Schierack, Peter and Grabley, Susanne and Munder, Thomas}, title = {Direct detection of Kitasatospora species with a chaperone oligonucleotide microarray method lacking PCR amplification}, series = {Journal of basic microbiology}, volume = {48}, journal = {Journal of basic microbiology}, number = {4}, issn = {1521-4028}, doi = {10.1002/jobm.200800038}, pages = {315 -- 318}, language = {en} } @misc{SchierackFilterSchareketal., author = {Schierack, Peter and Filter, Matthias and Scharek, Lydia and Toelke, Christiane and Taras, David and Tedin, Karsten and Haverson, Karin and L{\"u}bke-Becker, Antina and Wieler, Lothar H.}, title = {Effects of Bacillus cereus var. toyoi on immune parameters of pregnant sows}, series = {Veterinary Immunology and Immunopathology}, volume = {127}, journal = {Veterinary Immunology and Immunopathology}, number = {1-2}, issn = {0165-2427}, doi = {10.1016/j.vetimm.2008.09.002}, pages = {26 -- 37}, language = {en} } @misc{RoggenbuckVermeireHoffmannetal., author = {Roggenbuck, Dirk and Vermeire, Severine and Hoffmann, Ilse and Reinhold, Dirk and Schierack, Peter and Goihl, Alexander and Arnim, Ulrike von and De Hertogh, Gert and Polymeros, Dimitrios and Bogdanos, Dimitrios Petrou and Bossuyt, Xavier}, title = {Evidence of Crohn's disease-related anti-glycoprotein 2 antibodies in patients with celiac disease}, series = {Clinical Chemistry and Laboratory Medicine}, volume = {53}, journal = {Clinical Chemistry and Laboratory Medicine}, number = {9}, issn = {1437-4331}, doi = {10.1515/cclm-2014-0238}, pages = {1349 -- 1357}, language = {en} } @misc{ScholzGrossmannKnuetteretal., author = {Scholz, Juliane and Großmann, Kai and Kn{\"u}tter, Ilka and Hiemann, Rico and Sowa, Mandy and R{\"o}ber, Nadja and R{\"o}diger, Stefan and Schierack, Peter and Reinhold, Dirk and Bogdanos, Dimitrios Petrou and Meroni, Pier Luigi and Radice, Antonella and Conrad, Karsten and Roggenbuck, Dirk}, title = {Second generation analysis of antinuclear antibody (ANA) by combination of screening and confirmatory testing}, series = {Clinical Chemistry and Laboratory Medicine}, volume = {53}, journal = {Clinical Chemistry and Laboratory Medicine}, number = {12}, issn = {1437-4331}, doi = {10.1515/cclm-2015-0083}, pages = {1991 -- 2002}, language = {en} } @misc{SchmidtRoedigerGruneretal., author = {Schmidt, Carsten and R{\"o}diger, Stefan and Gruner, Melanie and Moncsek, Anja and Stohwasser, Ralf and Hanack, Katja and Schierack, Peter and Schr{\"o}der, Christian}, title = {Multiplex localization of sequential peptide epitopes by use of a planar microbead chip}, series = {Analytica Chimica Acta}, volume = {908}, journal = {Analytica Chimica Acta}, issn = {0003-2670}, doi = {10.1016/j.aca.2015.12.030}, pages = {150 -- 160}, language = {en} } @misc{GrossmannRoeberHiemannetal., author = {Großmann, Kai and R{\"o}ber, Nadja and Hiemann, Rico and R{\"o}diger, Stefan and Schierack, Peter and Reinhold, Dirk and Laass, Martin W. and Conrad, Karsten and Roggenbuck, Dirk}, title = {Simultaneous detection of celiac disease-specific IgA antibodies and total IgA}, series = {Autoimmunity Highlights}, volume = {7}, journal = {Autoimmunity Highlights}, number = {2}, issn = {2038-0305}, doi = {10.1007/s13317-016-0073-2}, pages = {10}, language = {en} } @misc{RoggenbuckBorghiSommaetal., author = {Roggenbuck, Dirk and Borghi, Maria Orietta and Somma, Valentina and B{\"u}ttner, Thomas and Schierack, Peter and Hanack, Katja and Grossi, Claudia and Bodio, Caterina and Macor, Paolo and Landenberg, Philipp von and Boccellato, Francesco and Mahler, Michael and Meroni, Pier Luigi}, title = {Antiphospholipid antibodies detected by line immunoassay differentiate among patients with antiphospholipid syndrome, with infections and asymptomatic carriers}, series = {Arthritis Research \& Therapy}, volume = {18}, journal = {Arthritis Research \& Therapy}, number = {111}, issn = {1465-9913}, doi = {10.1186/s13075-016-1018-x}, pages = {14}, language = {en} } @misc{BurdukiewiczRoedigerSobczyketal., author = {Burdukiewicz, Michał and R{\"o}diger, Stefan and Sobczyk, Piotr and Menschikowski, Mario and Schierack, Peter and Mackiewicz, Pawel}, title = {Methods for comparing multiple digital PCR experiments}, series = {Biomolecular Detection and Quantification}, volume = {9}, journal = {Biomolecular Detection and Quantification}, issn = {2214-7535}, doi = {10.1016/j.bdq.2016.06.004}, pages = {14 -- 19}, language = {en} } @misc{RoggenbuckReinholdBaumgartetal., author = {Roggenbuck, Dirk and Reinhold, Dirk and Baumgart, Daniel C. and Schierack, Peter and Conrad, Karsten and Laass, Martin W.}, title = {Autoimmunity in Crohn's Disease-A Putative Stratification Factor of the Clinical Phenotype}, series = {Advances in Clinical Chemistry}, volume = {77}, journal = {Advances in Clinical Chemistry}, issn = {0065-2423}, doi = {10.1016/bs.acc.2016.06.002}, pages = {77 -- 101}, language = {en} } @misc{SowaTrezziHiemannetal., author = {Sowa, Mandy and Trezzi, Barbara and Hiemann, Rico and Schierack, Peter and Großmann, Kai and Scholz, Juliane and Somma, Valentina and Sinico, Renato Alberto and Roggenbuck, Dirk and Radice, Antonella}, title = {Simultaneous comprehensive multiplex autoantibody analysis for rapidly progressive glomerulonephritis}, series = {Medicine}, volume = {95}, journal = {Medicine}, number = {44}, issn = {0025-7974}, doi = {10.1097/MD.0000000000005225}, pages = {5225}, language = {en} } @misc{MohsinRazaRoschanskietal., author = {Mohsin, Mashkoor and Raza, Shahbaz and Roschanski, Nicole and Guenther, Sebastian and Ali, Aamir and Schierack, Peter}, title = {Description of the First Escherichia coli Clinical Isolate Harboring the Colistin Resistance Gene mcr-1 from the Indian Subcontinent}, series = {Antimicrobial Agents and Chemotherapy}, volume = {61}, journal = {Antimicrobial Agents and Chemotherapy}, number = {1}, issn = {1098-6596}, doi = {10.1128/AAC.01945-16}, pages = {2}, language = {en} } @misc{SowaHiemannSchieracketal., author = {Sowa, Mandy and Hiemann, Rico and Schierack, Peter and Reinhold, Dirk and Conrad, Karsten and Roggenbuck, Dirk}, title = {Next-Generation Autoantibody Testing by Combination of Screening and Confirmation-the CytoBead® Technology}, series = {Clinical Reviews in Allergy \& Immunology}, volume = {53}, journal = {Clinical Reviews in Allergy \& Immunology}, number = {1}, issn = {1559-0267}, doi = {10.1007/s12016-016-8574-3}, pages = {87 -- 104}, language = {en} } @misc{KolendaBurdukiewiczSchierack, author = {Kolenda, Rafał and Burdukiewicz, Michał and Schierack, Peter}, title = {A systematic review and meta-analysis of the epidemiology of pathogenic Escherichia coli of calves and the role of calves as reservoirs for human pathogenic E. coli}, series = {Frontiers in Cellular and Infection Microbiology}, volume = {5}, journal = {Frontiers in Cellular and Infection Microbiology}, issn = {2235-2988}, doi = {10.3389/fcimb.2015.00023}, pages = {12}, language = {en} } @misc{RoedigerKramerFroemmeletal., author = {R{\"o}diger, Stefan and Kramer, Toni and Fr{\"o}mmel, Ulrike and Weinreich, J{\"o}rg and Roggenbuck, Dirk and Guenther, Sebastian and Schaufler, Katharina and Schr{\"o}der, Christian and Schierack, Peter}, title = {Intestinal Escherichia coli colonization in a mallard duck population over four consecutive winter season}, series = {Environmental Microbiology}, volume = {17}, journal = {Environmental Microbiology}, number = {9}, issn = {1462-2920}, doi = {10.1111/1462-2920.12807}, pages = {3352 -- 3361}, language = {en} } @misc{MurugaiyanKruegerRoesleretal., author = {Murugaiyan, Jayaseelan and Kr{\"u}ger, Karolin and R{\"o}sler, Uwe and Weinreich, J{\"o}rg and Schierack, Peter}, title = {Assessment of species and antimicrobial resistance among Enterobacteriaceae isolated from mallard duck faeces}, series = {Environmental Monitoring and Assessment}, volume = {187}, journal = {Environmental Monitoring and Assessment}, number = {3}, issn = {0167-6369}, doi = {10.1007/s10661-015-4346-4}, pages = {127 -- 137}, language = {en} } @misc{LodemannStrahlendorfSchieracketal., author = {Lodemann, Ulrike and Strahlendorf, Julia and Schierack, Peter and Klingspor, Shanti and Aschenbach, J{\"o}rg R. and Martens, Holger}, title = {Effects of the Probiotic Enterococcus faecium and Pathogenic Escherichia coli Strains in a Pig and Human Epithelial Intestinal Cell Model}, series = {Scientifica}, volume = {2015}, journal = {Scientifica}, number = {235184}, doi = {10.1155/2015/235184}, pages = {10}, language = {en} } @misc{VillaltaMytilinaiouElsneretal., author = {Villalta, Danilo and Mytilinaiou, Maria G. and Elsner, Martina and Hentschel, Christian and Cuccato, Juliane and Somma, Valentina and Schierack, Peter and Roggenbuck, Dirk and Bogdanos, Dimitrios Petrou}, title = {Autoantibodies to asialoglycoprotein receptor (ASGPR) in patients with autoimmune liver diseases}, series = {Clinica Chimica Acta}, volume = {450}, journal = {Clinica Chimica Acta}, issn = {0009-8981}, doi = {10.1016/j.cca.2015.07.021}, pages = {5}, language = {en} } @misc{KolendaSchierackZiebaetal., author = {Kolenda, Rafał and Schierack, Peter and Zieba, Filip and Zwijacz-Kozica, Tomasz and Bednarski, Michal}, title = {First molecular characterization of Sarcocystis tenella in Tatra chamois (Rupicapra rupicapra tatrica) in Poland}, series = {Parasitology Research}, volume = {114}, journal = {Parasitology Research}, number = {10}, issn = {0932-0113}, doi = {10.1007/s00436-015-4619-4}, pages = {3885 -- 3892}, language = {en} } @misc{RoedigerBurdukiewiczBlagodatskikhetal., author = {R{\"o}diger, Stefan and Burdukiewicz, Michał and Blagodatskikh, Konstantin A. and Jahn, Michael and Schierack, Peter}, title = {R as an Environment for the Reproducible Analysis of DNA Amplification Experiments}, series = {The R journal}, volume = {7}, journal = {The R journal}, number = {1}, issn = {2073-4859}, pages = {127 -- 150}, language = {en} } @misc{RoedigerBurdukiewiczSchierack, author = {R{\"o}diger, Stefan and Burdukiewicz, Michał and Schierack, Peter}, title = {chipPCR: an R package to pre-process raw data of amplification curves. Bioinformatics}, series = {Bioinformatics}, volume = {31}, journal = {Bioinformatics}, number = {17}, issn = {1367-4803}, doi = {10.1093/bioinformatics/btv205}, pages = {2900 -- 2902}, language = {en} } @inproceedings{RoedigerBoehmNitschkeetal., author = {R{\"o}diger, Stefan and B{\"o}hm, Alexander and Nitschke, J{\"o}rg and Stavitskaya, Luba and Gruner, Melanie and Kundzer, Alena V. and Volkova, Margarita V. and Generalov, I. and Schmidt, Carsten and Schr{\"o}der, Christian and Roggenbuck, Dirk and Schierack, Peter}, title = {Development of a Method for Multiplex Real-Time Analysis of Enzymatic Activity on a Microbead-Chip}, series = {Infection, tumors and autoimmunity, report on the 11th Dresden Symposium on Autoantibodies held in Dresden on September 1-4, 2013}, booktitle = {Infection, tumors and autoimmunity, report on the 11th Dresden Symposium on Autoantibodies held in Dresden on September 1-4, 2013}, publisher = {Pabst Science Publ.}, address = {Lengerich [u.a.]}, isbn = {978-3-89967-881-9}, pages = {275 -- 280}, language = {en} } @misc{RoedigerLehmannFroemmeletal., author = {R{\"o}diger, Stefan and Lehmann, Werner and Fr{\"o}mmel, Ulrike and B{\"o}hm, Alexander and Nitschke, J{\"o}rg and Burdukiewicz, Michał and Schr{\"o}der, Christian and Dangla, R{\´e}mi and Droniou, Magali and Schierack, Peter}, title = {The Modi Operandi of the VideoScan Platform for the Detection and Analysis of Nucleic Acids. Life Science Day 2013 \& 17. Leibniz Conference of Advanced Science, Freie Universit{\"a}t Berlin, 24.10.2013}, pages = {1}, language = {en} } @misc{KramerSchiebelZelcketal., author = {Kramer, Toni and Schiebel, Juliane and Zelck, Claudia and Weinreich, J{\"o}rg and Schierack, Peter and R{\"o}diger, Stefan}, title = {Genotyping and gene expression analysis of putative reference genes in Enterobacteriaceae, 67th Annual Meeting of the German Society of Hygiene and Microbiology (DGHM), 27.-30.09.2015, M{\"u}nster}, doi = {10.7490/f1000research.1111354.1}, language = {en} } @inproceedings{RoedigerBurdukiewiczHeiserichetal., author = {R{\"o}diger, Stefan and Burdukiewicz, Michał and Heiserich, Lisa and Schierack, Peter and Roggenbuck, Dirk}, title = {Digital Enumeration of Double Strand Breaks via γH2AX and Aassociated biomarkers in a Computing Environment for Reproducible Research}, series = {From autoantibody research to standardized diagnostic assays in the management of human diseases, report on the 12th Dresden Symposium on Autoantibodies, September 23-26, 2015}, booktitle = {From autoantibody research to standardized diagnostic assays in the management of human diseases, report on the 12th Dresden Symposium on Autoantibodies, September 23-26, 2015}, publisher = {Pabst Science Publishers}, address = {Lengerich}, isbn = {978-3-95853-104-8}, pages = {S. 413}, language = {en} } @misc{RoedigerSchneiderSaueretal., author = {R{\"o}diger, Stefan and Schneider, Jens and Sauer, Lysann and Reddig, Annika and Schierack, Peter and Roggenbuck, Dirk and Schr{\"o}der, Christian}, title = {A Multiparameter Platform for The Analysis of DNA Double-strand Breaks and Associated Biomarkers after genome Editing Austrian Biomarker Symposium (ASBD) 2016, 10.-11.03.2016, Wien, {\"O}sterreich}, language = {en} } @misc{SauerRoedigerSchneideretal., author = {Sauer, Lysann and R{\"o}diger, Stefan and Schneider, Jens and Schierack, Peter and Roggenbuck, Dirk and Schr{\"o}der, Christian}, title = {Functional Multiparameter Analy sis of Double-Strand Breaks and Associate Biomarkers during Genome Editing, Genome Editing and Gene Modulation Congress 2016, 6.-8.04.2016, Oxford, United Kingdom}, language = {en} } @inproceedings{KolendaBurdukiewiczSzaboetal., author = {Kolenda, Rafał and Burdukiewicz, Michał and Szabo, M. and Orlowska, Aleksandra and Nitschke, J{\"o}rg and B{\"o}hm, Alexander and Schierack, Peter}, title = {Influence of Salmonella FimH sequence variation on binding to pancreatic secretory granule membrane major glycoprotein GP2 of human and porcine origin}, series = {5th ASM Conference on Salmonella, Potsdam, 29.08-01.09.2016}, booktitle = {5th ASM Conference on Salmonella, Potsdam, 29.08-01.09.2016}, publisher = {American Society for Microbiology}, address = {Washington, DC}, pages = {S. 125}, language = {en} } @inproceedings{BurdukiewiczMikolajczykSzaboetal., author = {Burdukiewicz, Michał and Mikolajczyk, A. and Szabo, Istvan and Nitschke, J{\"o}rg and B{\"o}hm, Alexander and Schierack, Peter and Kolenda, Rafał}, title = {Automated enumeration of Salmonella spp. in cell line infection assays and screening of cell line infectivity among various Salmonella isolates}, series = {5th ASM Conference on Salmonella, Potsdam, 29.08-01.09.2016}, booktitle = {5th ASM Conference on Salmonella, Potsdam, 29.08-01.09.2016}, publisher = {American Society for Microbiology}, address = {Washington, DC}, pages = {S. 127}, language = {en} } @inproceedings{KolendaBurdukiewiczSchiebeletal., author = {Kolenda, Rafał and Burdukiewicz, Michał and Schiebel, Juliane and Szabo, Istvan and Orlowska, Aleksandra and Nitschke, J{\"o}rg and B{\"o}hm, Alexander and Schierack, Peter}, title = {Adhesion of Salmonella to pancreatic secretory granule membrane major glycoprotein GP2 depends on FimH sequence variation}, series = {Abstractbook, Microbiology and Infection, 5th Joint Conference of the DGHM \& VAAM, VAAM Annual Meeting 2017, 69th Annual Meeting of the DGHM}, booktitle = {Abstractbook, Microbiology and Infection, 5th Joint Conference of the DGHM \& VAAM, VAAM Annual Meeting 2017, 69th Annual Meeting of the DGHM}, publisher = {Spektrumverlag}, address = {Heidelberg}, pages = {S. 118}, language = {en} } @misc{DeutschmannDinterRoedigeretal., author = {Deutschmann, Claudia and Dinter, Franziska and R{\"o}diger, Stefan and Roggenbuck, Dirk and Schierack, Peter}, title = {Comparison of Lab and Point of Care (POC) technologies - case study for CHI3L1, Potsdam Days on Bioanalysis}, pages = {1}, language = {en} } @inproceedings{RoedigerBoehmNitschkeetal., author = {R{\"o}diger, Stefan and B{\"o}hm, Alexander and Nitschke, J{\"o}rg and Stavitskaya, Luba and Gruner, Melanie and Kundzer, Alena V. and Volkova, Margarita V. and Generalov, I. and Schmidt, Carsten and Schr{\"o}der, Christian and Roggenbuck, Dirk and Schierack, Peter}, title = {Development of a Method for Multiplex Real-Time Analysis of Enzymati c Activity on a Microbead-Chip.}, series = {Infections, Tumors and Autoimmunity, Report on the 11th Dresden Symposium on Autoantibodies held in Dresden on September 01. - 04., 2013}, booktitle = {Infections, Tumors and Autoimmunity, Report on the 11th Dresden Symposium on Autoantibodies held in Dresden on September 01. - 04., 2013}, publisher = {Pabst Science Publ.}, address = {Lengerich}, isbn = {978-3-89967-881-9}, pages = {280}, language = {en} } @inproceedings{RoedigerHanschmannSteidleetal., author = {R{\"o}diger, Stefan and Hanschmann, Henning and Steidle, Michael and Schr{\"o}der, Christian and Schierack, Peter and Lehmann, Werner}, title = {Detection of Borrelia, Bordetella and HPV with the LoopTag Real-Time PCR Probe System}, series = {International journal of medical microbiology}, volume = {303}, booktitle = {International journal of medical microbiology}, number = {Supplement 1}, issn = {1618-0607}, pages = {12 -- 13}, language = {en} } @misc{DinterDeutschmannSchieracketal., author = {Dinter, Franziska and Deutschmann, Claudia and Schierack, Peter and Dame, Gregory and R{\"o}diger, Stefan}, title = {Integration of Cardiovascular Disease Biomarkers in a Microfluidic Microbead Chip}, pages = {1}, language = {en} } @misc{SchiebelBoehmNitschkeetal., author = {Schiebel, Juliane and B{\"o}hm, Alexander and Nitschke, J{\"o}rg and Burdukiewicz, Michał and Weinreich, J{\"o}rg and Ali, Aamir and Roggenbuck, Dirk and R{\"o}diger, Stefan and Schierack, Peter}, title = {Genotypic and phenotypic characteristics in association with biofilm formation in different pathotypes of human clinical Escherichia coli isolates}, series = {Applied and Environmental Microbiology}, volume = {83}, journal = {Applied and Environmental Microbiology}, number = {24}, issn = {1098-5336}, doi = {10.1128/AEM.01660-17}, language = {en} } @misc{LiebschRoedigerBoehmetal., author = {Liebsch, Claudia and R{\"o}diger, Stefan and B{\"o}hm, Alexander and Nitschke, J{\"o}rg and Weinreich, J{\"o}rg and Fruth, Angelika and Roggenbuck, Dirk and Lehmann, Werner and Schedler, Uwe and Juretzek, Thomas and Schierack, Peter}, title = {Solid-phase microbead array for multiplex O-serotyping of Escherichia coli}, series = {Microchimica Acta}, volume = {184}, journal = {Microchimica Acta}, number = {5}, issn = {0026-3672}, doi = {10.1007/s00604-017-2088-4}, pages = {1405 -- 1415}, language = {en} } @misc{BurdukiewiczSpiessBlagodatskikhetal., author = {Burdukiewicz, Michał and Spiess, Andrej-Nikolai and Blagodatskikh, Konstantin A. and Lehmann, Werner and Schierack, Peter and R{\"o}diger, Stefan}, title = {Algorithms for automated detection of hook effect-bearing amplification curves}, series = {Biomolecular Detection and Quantification}, volume = {16}, journal = {Biomolecular Detection and Quantification}, issn = {2214-7535}, doi = {10.1016/j.bdq.2018.08.001}, pages = {1 -- 4}, language = {en} } @misc{DeutschmannRoggenbuckSchierack, author = {Deutschmann, Claudia and Roggenbuck, Dirk and Schierack, Peter}, title = {The loss of tolerance to CHI3L1-A putative role in inflammatory bowel disease?}, series = {Clinical Immunology}, volume = {199}, journal = {Clinical Immunology}, issn = {1521-6616}, doi = {10/gftf2k}, pages = {12 -- 17}, language = {en} } @misc{ReddigRuebeRoedigeretal., author = {Reddig, Annika and R{\"u}be, Claudia E. and R{\"o}diger, Stefan and Schierack, Peter and Reinhold, Dirk and Roggenbuck, Dirk}, title = {DNA damage assessment and potential applications in laboratory diagnostics and precision medicine}, series = {Journal of Laboratory and Precision Medicine}, volume = {3}, journal = {Journal of Laboratory and Precision Medicine}, issn = {2519-9005}, doi = {10.21037/jlpm.2018.03.06}, pages = {15}, language = {en} } @misc{SowaReddigSchieracketal., author = {Sowa, Mandy and Reddig, Annika and Schierack, Peter and Reinhold, Dirk and Roggenbuck, Dirk}, title = {Phosphorylated histone 2AX foci determination in capillary blood mononuclear cells}, series = {Journal of Laboratory and Precision Medicine}, volume = {3}, journal = {Journal of Laboratory and Precision Medicine}, issn = {2519-9005}, doi = {10.21037/jlpm.2018.04.02}, pages = {6}, language = {en} } @misc{SchneiderWeissRuheetal., author = {Schneider, Jens and Weiss, Romano and Ruhe, Madeleine and Jung, Tobias and Roggenbuck, Dirk and Stohwasser, Ralf and Schierack, Peter and R{\"o}diger, Stefan}, title = {Open source bioimage informatic tools for the analysis of DNA damage and associated biomarkers}, series = {Journal of Laboratory and Precision Medicine}, volume = {4}, journal = {Journal of Laboratory and Precision Medicine}, issn = {2519-9005}, doi = {10.21037/jlpm.2019.04.05}, language = {en} } @misc{RuheRabeJurischkaetal., author = {Ruhe, Madeleine and Rabe, Dominik and Jurischka, Christoph and Schr{\"o}der, Julia and Schierack, Peter and Deckert, P. Markus and R{\"o}diger, Stefan}, title = {Molecular biomarkers of DNA damage in diffuse large-cell lymphoma-a review}, series = {Journal of Laboratory and Precision Medicine}, volume = {4}, journal = {Journal of Laboratory and Precision Medicine}, issn = {2519-9005}, doi = {10.21037/jlpm.2019.01.01}, pages = {20}, language = {en} } @misc{UmairMohsinAlietal., author = {Umair, Muhammad and Mohsin, Mashkoor and Ali, Qasim and Qamar, Muhammad U. and Raza, Shahbaz and Ali, Aamir and Guenther, Sebastian and Schierack, Peter}, title = {Prevalence and Genetic Relatedness of Extended Spectrum-ß-Lactamase-Producing Escherichia coli Among Humans, Cattle, and Poultry in Pakistan}, series = {Microbial drug resistance}, volume = {25}, journal = {Microbial drug resistance}, number = {9}, issn = {1931-8448}, doi = {10.1089/mdr.2018.0450}, pages = {1374 -- 1381}, language = {en} } @misc{WajidAwanSaleemietal., author = {Wajid, Muhammad and Awan, Asad Bashir and Saleemi, Muhammad Kashif and Weinreich, J{\"o}rg and Schierack, Peter and Sarwar, Yasra and Ali, Aamir}, title = {Multiple Drug Resistance and Virulence Profiling of Salmonella enterica Serovars Typhimurium and Enteritidis from Poultry Farms of Faisalabad, Pakistan}, series = {Microbial Drug Resistance}, volume = {25}, journal = {Microbial Drug Resistance}, number = {1}, issn = {1931-8448}, doi = {10.1089/mdr.2018.0121}, pages = {133 -- 142}, language = {en} } @misc{AkhtarGhauriParveenetal., author = {Akhtar, Nasrin and Ghauri, M. A. and Parveen, Sana and Farooq, M. and Ali, Aamir and Schierack, Peter}, title = {Comparative Analysis of Draft Genome Sequence of Rhodococcus sp. Eu-32 with Other Rhodococcus Species for Its Taxonomie Status and Sulfur Metabolism Potential}, series = {Current microbiology}, volume = {76}, journal = {Current microbiology}, number = {10}, issn = {1432-0991}, doi = {10.1007/s00284-019-01737-1}, pages = {1207 -- 1214}, language = {en} } @misc{OloweAdefioyeAjayeobaetal., author = {Olowe, Olugbenga Adekunle and Adefioye, Olusolabomi J. and Ajayeoba, T. A. and Schiebel, Juliane and Weinreich, J{\"o}rg and Ali, Aamir and Burdukiewicz, Michał and R{\"o}diger, Stefan and Schierack, Peter}, title = {Phylogenetic grouping and biofilm formation of Multidrug Resistant Escherichia coli Isolates from Humans, Animals and Food products in South-west Nigeria}, series = {Scientific African}, volume = {6}, journal = {Scientific African}, issn = {2468-2276}, doi = {10.1016/j.sciaf.2019.e00158}, pages = {11}, language = {en} } @misc{HerrmannRoedigerSchmidtetal., author = {Herrmann, Anna and R{\"o}diger, Stefan and Schmidt, Carsten and Schierack, Peter and Schedler, Uwe}, title = {Spatial Separation of Microbeads into Detection Levels by a Bioorthogonal Porous Hydrogel for Size-Selective Analysis und Increased Multiplexicity}, series = {Analytical chemistry}, volume = {91}, journal = {Analytical chemistry}, number = {13}, issn = {1520-6882}, doi = {10.1021/acs.analchem.9b01586.}, pages = {8484 -- 8491}, language = {en} } @misc{AwanSchiebelBoehmetal., author = {Awan, Asad Bashir and Schiebel, Juliane and B{\"o}hm, Alexander and Nitschke, J{\"o}rg and Sarwar, Yasra and Schierack, Peter and Ali, Aamir}, title = {Association of biofilm formation and cytotoxic potential with multidrug resistance in clinical isolates of Pseudomonas aeruginosa}, series = {EXCLI journal}, volume = {18}, journal = {EXCLI journal}, issn = {1611-2156}, pages = {79 -- 90}, language = {en} } @misc{DeutschmannRoggenbuckSchierack, author = {Deutschmann, Claudia and Roggenbuck, Dirk and Schierack, Peter}, title = {The loss of tolerance to CHI3L1-A putative role in inflammatory bowel disease?}, series = {Clinical Immunology}, volume = {199}, journal = {Clinical Immunology}, issn = {1521-6616}, doi = {10.1016/j.clim.2018.12.005}, pages = {12 -- 17}, language = {en} } @misc{DinterBurdukiewiczSchieracketal., author = {Dinter, Franziska and Burdukiewicz, Michał and Schierack, Peter and Lehmann, Werner and Nestler, J{\"o}rg and Dame, Gregory and R{\"o}diger, Stefan}, title = {Simultaneous detection and quantification of DNA and protein biomarkers in spectrum of cardiovascular diseases in a microfluidic microbead chip}, series = {Analytical and Bioanalytical Chemistry}, volume = {411}, journal = {Analytical and Bioanalytical Chemistry}, number = {29}, issn = {1618-2650}, doi = {10.1007/s00216-019-02199-x}, pages = {7725 -- 7735}, language = {en} } @misc{DeutschmannSowaMurugaiyanetal., author = {Deutschmann, Claudia and Sowa, Mandy and Murugaiyan, Jayaseelan and Roessler, Uwe and R{\"o}ber, Nadja and Conrad, Karsten and Laass, Martin W. and Bogdanos, Dimitrios Petrou and Sipeki, Nora and Papp, Maria and R{\"o}diger, Stefan and Roggenbuck, Dirk and Schierack, Peter}, title = {Identification of Chitinase-3-Like Protein 1 as a Novel Neutrophil Antigenic Target in Crohn's Disease}, series = {Journal of Crohn's and Colitis}, volume = {13}, journal = {Journal of Crohn's and Colitis}, number = {7}, issn = {1876-4479}, doi = {10.1093/ecco-jcc/jjz012}, pages = {894 -- 904}, abstract = {Background and Aims There is an increasing incidence of inflammatory bowel disease [IBD]. Autoimmune responses are involved in the pathophysiology of IBD, but their underlying pathways and target antigens have not yet been fully elucidated. Methods Autoantigenic targets in IBD were identified after separation of whole cell proteins isolated from neutrophils using two-dimensional electrophoresis and matrix assisted laser desorption ionization - time of flight mass spectrometry-based protein identification of the spots that displayed Western blotting signals with anti-neutrophil cytoplasmic antibody-positive sera. The prevalence of IgG, IgA and secretory IgA [sIgA] to chitinase 3-like protein 1 [CHI3L1] was analysed by enzyme-linked immunosorbent assays using recombinant CHI3L1 in 110 patients with Crohn's disease [CD], 95 with ulcerative colitis [UC], 126 with coeliac disease [CeD] and 86 healthy controls [HCs]. Results The 18-glycosylhydrolase family member CHI3L1 was identified as a neutrophil autoantigenic target. CD patients displayed significantly higher levels of IgG to CHI3L1 than patients with UC and CeD (p < 0.0001, respectively). IgA and sIgA to CHI3L1 was significantly higher in CD than in UC, CeD and HCs [p < 0.0001, respectively]. IgA and sIgA to CHI3L1 demonstrated the highest prevalence in CD [25.5\%, 28/110; and 41.8\%\%, 46/110] compared to HCs [2.3\%, 2/86; and 4.7\%\%, 4/86; p = 0.0015 and p < 0.0001] and are associated with a more complicated progression of CD. Conclusion CHI3L1 is a novel neutrophil autoantigenic target in CD. IgA and sIgA to CHI3L1 may serve as novel markers for CD and may facilitate the serological diagnosis of IBD.}, language = {en} } @misc{SowaMurugaiyanConradetal., author = {Sowa, Mandy and Murugaiyan, Jayaseelan and Conrad, Karsten and Laass, Martin W. and Bogdanos, Dimitrios Petrou and Papp, Maria and R{\"o}diger, Stefan and Roggenbuck, Dirk and Schierack, Peter}, title = {A novel neutrophil autoantigenic target in inflammatory bowel disease}, language = {en} } @misc{JurischkaDinterEfimovaetal., author = {Jurischka, Christoph and Dinter, Franziska and Efimova, Anastasia and Weiss, Romano and Schiebel, Juliane and Schulz, Christian and Fayziev, Bekzodjon and Schierack, Peter and Fischer, Thomas and R{\"o}diger, Stefan}, title = {An explorative study of polymers for 3D printing of bioanalytical test systems}, series = {Clinical Hemorheology and Microcirculation}, volume = {75}, journal = {Clinical Hemorheology and Microcirculation}, number = {1}, issn = {1875-8622}, doi = {10.3233/CH-190713}, pages = {57 -- 84}, abstract = {Background: The 3D printing is relevant as a manufacturing technology of functional models for forensic, pharmaceutical and bioanalytical applications such as drug delivery systems, sample preparation and point-of-care tests. Objective: Melting behavior and autofluorescence of materials are decisive for optimal printing and applicability of the product which are influenced by varying unknown additives. Methods: We have produced devices for bioanalytical applications from commercially available thermoplastic polymers using a melt-layer process. We characterized them by differential scanning calorimetry, fluorescence spectroscopy and functional assays (DNA capture assay, model for cell adhesion, bacterial adhesion and biofilm formation test). Results: From 14 tested colored, transparent and black materials we found only deep black acrylonitrile-butadiene-styrene (ABS) and some black polylactic acid (PLA) useable for fluorescence-based assays, with low autofluorescence only in the short-wave range of 300-400 nm. PLA was suitable for standard bioanalytical purposes due to a glass transition temperature of approximately 60°C, resistance to common laboratory chemicals and easy print processing. For temperature-critical methods, such as hybridization reactions up to 90°C, ABS was better suited. Conclusions: Autofluorescence was not a disadvantage per se but can also be used as a reference signal in assays. The rapid development of individual protocols for sample processing and analysis required the availability of a material with consistent quality over time. For fluorescence-based assays, the use of commercial standard materials did not seem to meet this requirement.}, language = {en} } @misc{LopensKrawczykPappetal., author = {Lopens, Steffi and Krawczyk, Marcin and Papp, Maria and Milkiewicz, Piotr and Schierack, Peter and Liu, Yudong and Wunsch, Ewa and Conrad, Karsten and Roggenbuck, Dirk}, title = {The search for the Holy Grail: autoantigenic targets in primary sclerosing cholangitis asscociated with diesease phenotype an neoplasia}, series = {Autoimmunity Highlights}, volume = {11}, journal = {Autoimmunity Highlights}, issn = {2038-3274}, doi = {10.1186/s13317-020-00129-x}, pages = {14}, language = {en} } @misc{SchmidtSchierackGerberetal., author = {Schmidt, Carsten and Schierack, Peter and Gerber, Ulrike and Schr{\"o}der, Christian and Choi, Youngeun and Bald, Ilko and Lehmann, Werner and R{\"o}diger, Stefan}, title = {Streptavidin Homologues for Applications on Solid Surfaces at High Temperatures}, series = {Langmuir}, volume = {36}, journal = {Langmuir}, number = {2}, issn = {1520-5827}, doi = {10.1021/acs.langmuir.9b02339}, pages = {628 -- 636}, language = {en} } @misc{VolkovSeguroLeionetal., author = {Volkov, Ilan and Seguro, Luciana and Leion, Elaine P. and Kov{\´a}cs, L{\´a}szl{\´o} and Roggenbuck, Dirk and Schierack, Peter and Gilburd, Boris and Doria, Andrea and Tektonidou, Maria G. and Agmon-Levin, Nancy}, title = {Profiles of criteria and non-criteria anti-phospholipid autoantibodies are associated with clinical phenotypes of the antiphospholipid syndrome}, series = {Autoimmunity Highlights}, volume = {11}, journal = {Autoimmunity Highlights}, issn = {2038-3274}, doi = {10.1186/s13317-020-00131-3}, pages = {1 -- 8}, language = {en} } @misc{AliKolendaKhanetal., author = {Ali, Aamir and Kolenda, Rafał and Khan, Muhammad Moman and Weinreich, J{\"o}rg and Li, Ganwu and Wieler, Lothar H. and Tedin, Karsten and Roggenbuck, Dirk and Schierack, Peter}, title = {Novel Avian Pathogenic Escherichia coli Genes Responsible for Adhesion to Chicken and Human Cell Lines}, series = {Applied and Environmental Microbiology}, volume = {86}, journal = {Applied and Environmental Microbiology}, number = {20}, issn = {1098-5336}, doi = {10.1128/AEM.01068-20}, language = {en} } @misc{SchierackHeidenKhanetal., author = {Schierack, Peter and Heiden, Stefan E. and Khan, Muhammad Moman and Nikolaus, Lena and Kolenda, Rafał and Stubbe, Michael and Lkhagvasuren, Davaa and R{\"o}diger, Stefan and Guenther, Sebastian and Schaufler, Katharina}, title = {Genomic and Phenotypic Analysis of an ESBL-Producing E. coli ST1159 Clonal Lineage From Wild Birds in Mongolia}, series = {Frontiers in Microbiology}, volume = {11}, journal = {Frontiers in Microbiology}, issn = {1664-302X}, doi = {10.3389/fmicb.2020.01699}, pages = {7}, language = {en} } @misc{ReimannZengJakopecetal., author = {Reimann, Ronny and Zeng, Bo and Jakopec, Martin and Burdukiewicz, Michał and Petrick, Ingolf and Schierack, Peter and R{\"o}diger, Stefan}, title = {Classification of dead and living microalgae Chlorella vulgaris by bioimage informatics an machine learning}, series = {Algal Research}, volume = {48}, journal = {Algal Research}, issn = {2211-9264}, doi = {10.1016/j.algal.2020.101908}, pages = {11}, language = {en} } @misc{RoggenbuckElmontReinholdetal., author = {Roggenbuck, Dirk and Elmont, Emilien and Reinhold, Dirk and Schierack, Peter and Conrad, Karsten and Boucraut, Joseph}, title = {Autoimmune Perpheral Neuropathies and Contribution of Antiganglioside/Sulphatide Autoantibody Testing}, series = {Mediterranean Jounal of Rheumatology}, volume = {31}, journal = {Mediterranean Jounal of Rheumatology}, number = {1}, issn = {2529-198X}, doi = {10.31138/mjr.31.1.10}, pages = {10 -- 18}, language = {en} } @misc{DeutschmannRoggenbuckSchieracketal., author = {Deutschmann, Claudia and Roggenbuck, Dirk and Schierack, Peter and R{\"o}diger, Stefan}, title = {Autoantibody testing by enzyme-linked immunosorbent assay-a case in which the solid phase decides on success and failure}, series = {Heliyon}, volume = {6}, journal = {Heliyon}, number = {1}, issn = {2405-8440}, doi = {10.1016/j.heliyon.2020.e03270}, pages = {6}, language = {en} } @misc{SchiebelNoackRoedigeretal., author = {Schiebel, Juliane and Noack, Jonas and R{\"o}diger, Stefan and Kammel, Anne and Menzel, Friederike and Schwibbert, Karin and Weise, Matthias and Weiss, Romano and B{\"o}hm, Alexander and Nitschke, J{\"o}rg and Elimport, Alexey and Roggenbuck, Dirk and Schierack, Peter}, title = {Analysis of three-dimensional biofilms on different material surfaces}, series = {Biomaterials Science}, volume = {8}, journal = {Biomaterials Science}, number = {12}, issn = {2047-4849}, doi = {10.1039/D0BM00455C}, pages = {3500 -- 3510}, language = {en} } @misc{LiedtkeSchroederRoggenbucketal., author = {Liedtke, Victoria and Schr{\"o}der, Christian and Roggenbuck, Dirk and Weiss, Romano and Stohwasser, Ralf and Schierack, Peter and R{\"o}diger, Stefan and Schenk, Lysann}, title = {LEDGF/p75 is required for an efficient DNA damage response}, series = {International Journal of Molecular Sciences}, volume = {22}, journal = {International Journal of Molecular Sciences}, number = {11}, doi = {10.3390/ijms22115866}, pages = {1 -- 16}, language = {en} } @misc{KolendaBurdukiewiczWimonćetal., author = {Kolenda, Rafał and Burdukiewicz, Michał and Wimonć, Marcjanna and Aleksandrowicz, Adrianna and Ali, Aamir and Szabo, Istvan and Tedin, Karsten and Bartholdson, Scott J. and Pickhard, Derek and Schierack, Peter}, title = {Identification of Natural Mutations Responsible for Altered Infection Phenotypes of Salmonella enterica Clinical Isolates by Using Cell Line Infection Screens}, series = {Applied and Environmental Microbiology}, volume = {87}, journal = {Applied and Environmental Microbiology}, number = {2}, issn = {1098-5336}, doi = {10.1128/AEM.02177-20}, language = {en} }