@misc{LiuHeiner, author = {Liu, Fei and Heiner, Monika}, title = {Modeling membrane systems using colored stochastic Petri nets}, series = {Natural Computing}, volume = {12}, journal = {Natural Computing}, number = {4}, issn = {1572-9796}, doi = {10.1007/s11047-013-9367-8}, pages = {617 -- 629}, language = {en} } @misc{LiuHeiner, author = {Liu, Fei and Heiner, Monika}, title = {Multiscale modelling of coupled Ca2+ channels using coloured stochastic Petri nets}, series = {IET Systems Biology}, volume = {7}, journal = {IET Systems Biology}, number = {4}, issn = {1751-8849}, pages = {106 -- 113}, language = {en} } @misc{HeinerYangLiu, author = {Heiner, Monika and Yang, Ming and Liu, Fei}, title = {Modeling and analyzing biological systems using colored hierarchical Petri nets illustrated by C. elegans vulval development}, series = {Journal of Biological Systems}, volume = {22}, journal = {Journal of Biological Systems}, number = {3}, issn = {1793-6470}, doi = {10.1142/S0218339014500181}, pages = {463 -- 493}, language = {en} } @incollection{LiuHeiner, author = {Liu, Fei and Heiner, Monika}, title = {Petri Nets for Modeling and Analyzing Biochemical Reaction Networks}, series = {Approaches in Integrative Bioinformatics}, booktitle = {Approaches in Integrative Bioinformatics}, editor = {Chen, Ming and Hofest{\"a}dt, Ralf}, publisher = {Springer}, address = {Heidelberg}, isbn = {978-3-642-41280-6}, doi = {10.1007/978-3-642-41281-3_9}, pages = {245 -- 272}, language = {en} } @misc{LiuHeinerYang, author = {Liu, Fei and Heiner, Monika and Yang, Ming}, title = {Representing Network Reconstruction Solutions with Colored Petri Nets}, series = {Neurocomputing}, volume = {174}, journal = {Neurocomputing}, number = {A}, issn = {0925-2312}, doi = {10.1016/j.neucom.2015.04.112}, pages = {483 -- 493}, language = {en} } @misc{LiuHeinerYang, author = {Liu, Fei and Heiner, Monika and Yang, Ming}, title = {Fuzzy stochastic Petri nets for modeling biological systems with uncertain kinetic parameters}, series = {PLoS ONE}, volume = {11}, journal = {PLoS ONE}, number = {2}, issn = {1932-6203}, doi = {10.1371/journal.pone.0149674}, pages = {0149674}, language = {en} } @misc{ParvuGilbertHeineretal., author = {P{\^a}rvu, Ovidiu and Gilbert, David and Heiner, Monika and Liu, Fei and Saunders, Nigel and Shaw, Simon}, title = {Spatial-temporal modelling and analysis of bacterial colonies with phase variable genes}, series = {ACM Transactions on Modeling and Computer Simulation (TOMACS)}, volume = {25}, journal = {ACM Transactions on Modeling and Computer Simulation (TOMACS)}, number = {2}, issn = {1558-1195}, doi = {10.1145/2742546}, pages = {13}, language = {en} } @misc{LiuBlaetkeHeineretal., author = {Liu, Fei and Bl{\"a}tke, Mary-Ann and Heiner, Monika and Yang, Ming}, title = {Modelling and simulating reaction-diffusion systems using coloured Petri nets}, series = {Computers in Biology and Medicine}, volume = {53}, journal = {Computers in Biology and Medicine}, issn = {0010-4825}, doi = {10.1016/j.compbiomed.2014.07.004}, pages = {297 -- 308}, language = {en} } @misc{GaoGilbertHeineretal., author = {Gao, Quian and Gilbert, David and Heiner, Monika and Liu, Fei and Maccagnola, Daniele and Tree, David}, title = {Multiscale Modelling and Analysis of Planar Cell Polarity in the Drosophila Wing}, series = {IEEE/ACM Transactions on Computational Biology and Bioinformatics}, volume = {10}, journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics}, number = {2}, issn = {1545-5963}, doi = {10.1109/TCBB.2012.101}, pages = {337 -- 351}, language = {en} } @inproceedings{ParvuGilbertHeineretal., author = {Parvu, Ovidiu and Gilbert, David and Heiner, Monika and Liu, Fei and Saunders, Nigel}, title = {Modelling and Analysis of Phase Variation in Bacterial Colony Growth}, series = {Computational Methods in Systems Biology, 11th International Conference, CMSB 2013, Klosterneuburg, Austria, September 22-24, 2013}, booktitle = {Computational Methods in Systems Biology, 11th International Conference, CMSB 2013, Klosterneuburg, Austria, September 22-24, 2013}, editor = {Gupta, Ashutosh and Henzinger, Thomas A.}, publisher = {Springer}, address = {Berlin [u.a.]}, isbn = {978-3-642-40707-9}, doi = {10.1007/978-3-642-40708-6_7}, pages = {78 -- 91}, language = {en} }