@misc{BaierDanielFrostetal., author = {Baier, Daniel and Daniel, Ines and Frost, Sarah and Naundorf, Robert}, title = {Image Data Analysis and Classification in Marketing}, series = {Advances in Data Analysis and Classification}, volume = {6}, journal = {Advances in Data Analysis and Classification}, number = {4}, issn = {1862-5347}, pages = {253 -- 276}, language = {en} } @misc{DanielFrostBaier, author = {Daniel, Ines and Frost, Sarah and Baier, Daniel}, title = {Market Segmentation Using Color Information of Images}, series = {International Journal of Electronic Commerce Studies}, volume = {6}, journal = {International Journal of Electronic Commerce Studies}, number = {1}, issn = {2073-9729}, doi = {10.7903/ijecs.1400}, pages = {137 -- 144}, language = {en} } @misc{FriedrichHollensteinerSchneideretal., author = {Friedrich, Ines and Hollensteiner, Jacqueline and Schneider, Dominik and Poehlein, Anja and Hertel, Robert and Daniel, Rolf}, title = {First Complete Genome Sequences of Janthinobacterium lividum EIF1 and EIF2 and their Comparative Genome Analysis}, series = {Genome Biology and Evolution}, volume = {12}, journal = {Genome Biology and Evolution}, number = {10}, issn = {1759-6653}, doi = {10.1093/gbe/evaa148}, pages = {1782 -- 1788}, abstract = {We present the first two complete genomes of the Janthinobacterium lividum species, namely strains EIF1 and EIF2, which both possess the ability to synthesize violacein. The violet pigment violacein is a secondary metabolite with antibacterial, antifungal, antiviral, and antitumoral properties. Both strains were isolated from environmental oligotrophic water ponds in G{\"o}ttingen. The strains were phylogenetically classified by ANI analysis and showed a species assignment to Janthinobacterium lividum with 97.72\% (EIF1) and 97.66\% (EIF2) identity. These are the first complete genome sequences of strains belonging to the species Janthinobacterium lividum. The genome of strain EIF1 consists of one circular chromosome (6,373,589 bp) with a GC-content of 61.98\%. The genome contains 5,551 coding sequences, 122 rRNAs, 93 tRNAs, and 1 tm-RNA. The genome of EIF2 comprises one circular chromosome (6,399,352 bp) with a GC-content of 61.63\% and a circular plasmid p356839 (356,839 bp) with a GC-content of 57.21\%. The chromosome encodes 5,691 coding sequences, 122 rRNAs, 93 tRNAs, and 1 tm-RNA and the plasmid harbors 245 coding sequences. In addition to the highly conserved chromosomally encoded violacein operon, the plasmid comprises a non-ribosomal peptide synthetase cluster (NRPS) with similarity to xenoamicin, which is a bioactive compound effective against protozoan parasites.}, language = {en} } @misc{HollensteinerFriedrichHollsteinetal., author = {Hollensteiner, Jacqueline and Friedrich, Ines and Hollstein, Lucas and Lamping, Jan-Philipp and Wolf, Kalina and Liesegang, Heiko and Poehlein, Anja and Hertel, Robert and Daniel, Rolf}, title = {Complete Genome Sequence of Kinneretia sp. Strain DAIF2, Isolated from a Freshwater Pond}, series = {Microbiology Resource Announcements}, volume = {10}, journal = {Microbiology Resource Announcements}, number = {8}, issn = {2576-098X}, doi = {10.1128/MRA.00003-21}, pages = {1 -- 3}, abstract = {Kinneretia sp. strain DAIF2 was isolated from a eutrophic freshwater pond. The genome consists of a single chromosome (6,010,585 bp) with a GC content of 69.3\%. The whole-genome-based phylogeny of DAIF2 revealed a closest relation to the genus Kinneretia.}, language = {en} } @misc{FriedrichHollensteinerScherfetal., author = {Friedrich, Ines and Hollensteiner, Jacqueline and Scherf, Janna and Weyergraf, Judith and Klassen, Anna and Poehlein, Anja and Hertel, Robert and Daniel, Rolf}, title = {Complete Genome Sequence of Stenotrophomonas indicatrix DAIF1}, series = {Microbiology Resource Announcements}, volume = {10}, journal = {Microbiology Resource Announcements}, number = {6}, issn = {2576-098X}, doi = {10.1128/MRA.01484-20}, pages = {1 -- 3}, abstract = {We present the complete genome of Stenotrophomonas indicatrix DAIF1, which was isolated from an oligotrophic pond in a water protection area. Whole-genome alignments indicated that strain DAIF1 belongs to the species Stenotrophomonas indicatrix. The whole genome (4,639,375 bp) harbors 4,108 protein-encoding genes, including 3,029 genes with assigned functions.}, language = {en} } @misc{FriedrichKlassenNeubaueretal., author = {Friedrich, Ines and Klassen, Anna and Neubauer, Hannes and Schneider, Dominik and Hertel, Robert and Daniel, Rolf}, title = {Living in a Puddle of Mud: Isolation and Characterization of Two Novel Caulobacteraceae Strains Brevundimonas pondensis sp. nov. and Brevundimonas goettingensis sp. nov.}, series = {Applied Microbiology}, volume = {1}, journal = {Applied Microbiology}, number = {1}, issn = {2673-8007}, doi = {10.3390/applmicrobiol1010005}, pages = {38 -- 59}, abstract = {Brevundimonas is a genus of freshwater bacteria belonging to the family Caulobacteraceae. The present study describes two novel species of the genus Brevundimonas (LVF1 T and LVF2 T ). Both were genomically, morphologically, and physiologically characterized. Average nucleotide identity analysis revealed both are unique among known Brevundimonas strains. In silico and additional ProphageSeq analyses resulted in two prophages in the LVF1 T genome and a remnant prophage in the LVF2 T genome. Bacterial LVF1 T cells form an elliptical morphotype, in average 1 µ m in length and 0.46 µ m in width, with a single flagellum. LVF2 T revealed motile cells approximately 1.6 µ m in length and 0.6 µ m in width with a single flagellum, and sessile cell types 1.3 µ m in length and 0.6 µ m in width. Both are Gram-negative, aerobic, have optimal growth at 30 ◦ C (up to 0.5 to 1\% NaCl). Both are resistant towards erythromycin, meropenem, streptomycin, tetracycline and vancomycin. Anaerobic growth was observed after 14 days for LVF1 T only. For LVF1 T the name Brevundimonas pondensis sp. nov. and for LVF2 T the name Brevundimonas goettingensis sp. nov. are proposed. Type strains are LVF1 T (=DSM 112304 T = CCUG 74982 T = LMG 32096 T ) and LVF2 T (=DSM 112305 T = CCUG 74983 T = LMG 32097 T ).}, language = {en} } @misc{FriedrichBodenbergerNeubaueretal., author = {Friedrich, Ines and Bodenberger, Bernhard and Neubauer, Hannes and Hertel, Robert and Daniel, Rolf}, title = {Down in the pond: Isolation and characterization of a new Serratia marcescens strain (LVF3) from the surface water near frog's lettuce (Groenlandia densa)}, series = {PLoS One}, volume = {16}, journal = {PLoS One}, number = {11}, issn = {1932-6203}, doi = {10.1371/journal.pone.0259673}, abstract = {Serratia marcescens is a species that belongs to the family of Yersiniaceae. This family comprises taxa representing opportunistic human- and phytopathogens but also plant growth-promoting rhizobacteria (PGPR). This study describes a novel Gram-negative strain (LVF3R) of the species Serratia marcescens. The strain was characterized genomically, morphologically, and physiologically. In addition, the potential of the isolate to act as a host strain to assess the diversity of Serratia associated phages in environmental samples was explored. Average nucleotide identity analysis revealed that LVF3R belongs to the species Serratia marcescens. In silico analysis and ProphageSeq data resulted in the identification of one prophage, which is capable of viral particle formation. Electron microscopy showed cells of a rod-shaped, flagellated morphotype. The cells revealed a length and width of 1-1.6 μm and 0.8 μm, respectively. LVF3R showed optimal growth at 30 C and in the presence of up to 2\% (w/v) NaCl. It exhibited resistances to ampicillin, erythromycin, oxacillin, oxytetracycline, rifampicin, tetracycline, and vancomycin. Genome data indicate that strain S. marcescens LVF3R is a potential PGPR strain. It harbors genes coding for indole acetic acid (IAA) biosynthesis, siderophore production, plant polymer degradation enzymes, acetoin synthesis, flagellar proteins, type IV secretion system, chemotaxis, phosphorous solubilization, and biofilm formation.}, language = {en} } @misc{HertelSchoeneMittelstaedtetal., author = {Hertel, Robert and Sch{\"o}ne, Kerstin and Mittelst{\"a}dt, Carolin and Meißner, Janek and Zschoche, Nick and Collignon, Madeline and Kohler, Christian and Friedrich, Ines and Schneider, Dominik and Hoppert, Michael and Kuhn, Ramona and Schwedt, Inge and Scholz, Patricia and Poehlein, Anja and Martienssen, Marion and Ischebeck, Till and Daniel, Rolf and Commichau, Fabian M.}, title = {Characterization of glyphosate-resistant Burkholderia anthina and Burkholderia cenocepacia isolates from a commercial Roundup® solution}, series = {Environmental Microbiology Reports}, volume = {14}, journal = {Environmental Microbiology Reports}, number = {1}, issn = {1758-2229}, doi = {10.1111/1758-2229.13022}, pages = {70 -- 84}, abstract = {Roundup® is the brand name for herbicide solutions containing glyphosate, which specifically inhibits the 5-enolpyruvyl-shikimate-3-phosphate (EPSP) synthase of the shikimate pathway. The inhibition of the EPSP synthase causes plant death because EPSP is required for biosynthesis of aromatic amino acids. Glyphosate also inhibits the growth of archaea, bacteria, Apicomplexa, algae and fungi possessing an EPSP synthase. Here, we have characterized two glyphosate-resistant bacteria from a Roundup solution. Taxonomic classification revealed that the isolates 1CH1 and 2CH1 are Burkholderia anthina and Burkholderia cenocepacia strains respectively. Both isolates cannot utilize glyphosate as a source of phosphorus and synthesize glyphosate-sensitive EPSP synthase variants. Burkholderia. anthina 1CH1 and B. cenocepacia 2CH1 tolerate high levels of glyphosate because the herbicide is not taken up by the bacteria. Previously, it has been observed that the exposure of soil bacteria to herbicides like glyphosate promotes the development of antibiotic resistances. Antibiotic sensitivity testing revealed that the only the B. cenocepacia 2CH1 isolate showed increased resistance to a variety of antibiotics. Thus, the adaptation of B. anthina 1CH1 and B. cenocepacia 2CH1 to glyphosate did not generally increase the antibiotic resistance of both bacteria. However, our study confirms the genomic adaptability of bacteria belonging to the genus Burkholderia.}, language = {en} } @misc{BuchananLewisParisetal., author = {Buchanan, Erin M. and Lewis, Savannah C. and Paris, Bastien and Forscher, Patrick S. and Pavlacic, Jeffrey M. and Beshears, Julie E. and Drexler, Shira Meir and Gourdon-Kanhukamwe, Am{\´e}lie and Mallik, Peter R and Silan, Miguel Alejandro A. and Miller, Jeremy K. and IJzerman, Hans and Moshontz, Hannah and Beaudry, Jennifer L. and Suchow, Jordan W. and Chartier, Christopher R. and Coles, Nicholas A. and Sharifian, MohammadHasan and Todsen, Anna Louise and Levitan, Carmel A. and Azevedo, Fl{\´a}vio and Legate, Nicole and Heller, Blake and Rothman, Alexander J. and Dorison, Charles A. and Gill, Brian P. and Wang, Ke and Rees, Vaughan W. and Gibbs, Nancy and Goldenberg, Amit and Thi Nguyen, Thuy-vy and Gross, James J. and Kaminski, Gwena{\^e}l and von Bastian, Claudia C. and Paruzel-Czachura, Mariola and Mosannenzadeh, Farnaz and Azouaghe, Soufian and Bran, Alexandre and Ruiz-Fernandez, Susana and Santos, Anabela Caetano and Reggev, Niv and Zickfeld, Janis H. and Akkas, Handan and Pantazi, Myrto and Ropovik, Ivan and Korbmacher, Max and Arriaga, Patr{\´i}cia and Gjoneska, Biljana and Warmelink, Lara and Alves, Sara G. and de Holanda Coelho, Gabriel Lins and Stieger, Stefan and Schei, Vidar and Hanel, Paul H. P. and Szaszi, Barnabas and Fedotov, Maksim and Antfolk, Jan and Marcu, Gabriela-Mariana and Schr{\"o}tter, Jana and Kunst, Jonas R. and Geiger, Sandra J. and Adetula, Adeyemi and Kocalar, Halil Emre and Kielińska, Julita and Kačm{\´a}r, Pavol and Bokkour, Ahmed and Galindo-Caballero, Oscar J. and Djamai, Ikhlas and P{\"o}ntinen, Sara Johanna and AGESIN, Bamikole Emmanuel and Jerns{\"a}ther, Teodor and Urooj, Anum and Rachev, Nikolay R. and Koptjevskaja-Tamm, Maria and Kurfal{\i}, Murathan and Pit, Ilse L. and Li, Ranran and {\c{C}}oksan, Sami and Dubrov, Dmitrii and Paltrow, Tamar Elise and Ban{\´i}k, Gabriel and Korobova, Tatiana and Studzinska, Anna and Jiang, Xiaoming and Aruta, John Jamir Benzon R. and Vintr, J{\´a}chym and Chiu, Faith and Kaliska, Lada and Berkessel, Jana B. and T{\"u}mer, Murat and Morales-Izquierdo, Sara and Chuan-Peng, Hu and Vezirian, Kevin and Rosa, Anna Dalla and Bialobrzeska, Olga and Vasilev, Martin R. and Beitner, Julia and K{\´a}cha, Ondřej and Žuro, Barbara and Westerlund, Minja and Nedelcheva-Datsova, Mina and Findor, Andrej and Krupić, Dajana and Kowal, Marta and Askelund, Adrian Dahl and Pourafshari, Razieh and Đorđević, Jasna Milošević and Schmidt, Nadya-Daniela and Baklanova, Ekaterina and Szala, Anna and Zakharov, Ilya and Vranka, Marek A. and Ihaya, Keiko and Grano, Caterina and Cellini, Nicola and Białek, Michał and Anton-Boicuk, Lisa and Dalgar, Ilker and Ad{\i}g{\"u}zel, Arca and Verharen, Jeroen P. H. and Maturan, Princess Lovella G. and Kassianos, Angelos P. and Oliveira, Raquel and Čadek, Martin and Adoric, Vera Cubela and {\"O}zdoğru, Asil Ali and Sverdrup, Therese E. and Aczel, Balazs and Zambrano, Danilo and Ahmed, Afroja and Tamnes, Christian K. and Yamada, Yuki and Volz, Leonhard and Sunami, Naoyuki and Suter, Lilian and Vieira, Luc and Groyecka-Bernard, Agata and Kamburidis, Julia Arhondis and Reips, Ulf-Dietrich and Harutyunyan, Mikayel and Adetula, Gabriel Agboola and Allred, Tara Bulut and Barzykowski, Krystian and Antazo, Benedict G and Zsido, Andras N. and Šakan, Dušana Dušan and Cyrus-Lai, Wilson and Ahlgren, Lina Pernilla and Hruška, Matej and Vega, Diego and Manunta, Efisio and Mokady, Aviv and Capizzi, Mariagrazia and Martončik, Marcel and Say, Nicolas and Filip, Katarzyna and Vilar, Roosevelt and Staniaszek, Karolina and Vdovic, Milica and Adamkovic, Matus and Johannes, Niklas and Hajdu, Nandor and Cohen, Noga and Overkott, Clara and Krupić, Dino and Hubena, Barbora and Nilsonne, Gustav and Mioni, Giovanna and Solorzano, Claudio Singh and Ishii, Tatsunori and Chen, Zhang and Kushnir, Elizaveta and Karaarslan, Cemre and Ribeiro, Rafael R. and Khaoudi, Ahmed and Kossowska, Małgorzata and Bavolar, Jozef and Hoyer, Karlijn and Roczniewska, Marta and Karababa, Alper and Becker, Maja and Monteiro, Renan P. and Kunisato, Yoshihiko and Metin-Orta, Irem and Adamus, Sylwia and Kozma, Luca and Czarnek, Gabriela and Domurat, Artur and Štrukelj, Eva and Alvarez, Daniela Serrato and Parzuchowski, Michal and Massoni, S{\´e}bastien and Czamanski-Cohen, Johanna and Pronizius, Ekaterina and Muchembled, Fany and van Schie, Kevin and Sa{\c{c}}akl{\i}, Asl{\i} and Hristova, Evgeniya and Kuzminska, Anna O. and Charyate, Abdelilah and Bijlstra, Gijsbert and Afhami, Reza and Majeed, Nadyanna M. and Musser, Erica D. and Sirota, Miroslav and Ross, Robert M. and Yeung, Siu Kit and Papadatou-Pastou, Marietta and Foroni, Francesco and Almeida, In{\^e}s A. T. and Grigoryev, Dmitry and Lewis, David M. G. and Holford, Dawn L. and Janssen, Steve M. J. and Tatachari, Srinivasan and Batres, Carlota and Olofsson, Jonas K. and Daches, Shimrit and Belaus, Anabel and Pfuhl, Gerit and Corral-Frias, Nadia Sarai and Sousa, Daniela and R{\"o}er, Jan Philipp and Isager, Peder Mortvedt and Godbersen, Hendrik and Walczak, Radoslaw B. and Van Doren, Natalia and Ren, Dongning and Gill, Tripat and Voracek, Martin and DeBruine, Lisa M. and Anne, Michele and Očovaj, Sanja Batić and Thomas, Andrew G. and Arvanitis, Alexios and Ostermann, Thomas and Wolfe, Kelly and Arinze, Nwadiogo Chisom and Bundt, Carsten and Lamm, Claus and Calin-Jageman, Robert J and Davis, William E. and Karekla, Maria and Zorjan, Saša and Jaremka, Lisa M. and Uttley, Jim and Hricova, Monika and Koehn, Monica A and Kiselnikova, Natalia and Bai, Hui and Krafnick, Anthony J. and Balci, Busra Bahar and Ballantyne, Tonia and Lins, Samuel and Vally, Zahir and Esteban-Serna, Celia and Schmidt, Kathleen and Macapagal, Paulo Manuel L. and Szwed, Paulina and Zdybek, Przemysław Marcin and Moreau, David and Collins, W. Matthew and Joy-Gaba, Jennifer A. and Vilares, Iris and Tran, Ulrich S. and Boudesseul, Jordane and Albayrak-Aydemir, Nihan and Dixson, Barnaby James Wyld and Perillo, Jennifer T and Ferreira, Ana and Westgate, Erin C. and Aberson, Christopher L. and Arinze, Azuka Ikechukwu and Jaeger, Bastian and Butt, Muhammad Mussaffa and Silva, Jaime R. and Storage, Daniel Shafik and Janak, Allison P and Jim{\´e}nez-Leal, William and Soto, Jose A. and Sorokowska, Agnieszka and McCarthy, Randy and Tullett, Alexa M and Frias-Armenta, Martha and Ribeiro, Matheus Fernando Felix and Hartanto, Andree and Forbes, Paul A. G. and Willis, Megan L. and del Carmen Tejada R, Mar{\´i}a and Torres, Adriana Julieth Olaya and Stephen, Ian D and Vaidis, David C. and de la Rosa-G{\´o}mez, Anabel and Yu, Karen and Sutherland, Clare A. M. and Manavalan, Mathi and Behzadnia, Behzad and Urban, Jan and Baskin, Ernest and McFall, Joseph P. and Ogbonnaya, Chisom Esther and Fu, Cynthia H. Y. and Rahal, Rima-Maria and Ndukaihe, Izuchukwu L. G. and Hostler, Thomas J. and Kappes, Heather Barry and Sorokowski, Piotr and Khosla, Meetu and Lazarevic, Ljiljana B. and Eudave, Luis and Vilsmeier, Johannes K. and Luis, Elkin O. and Muda, Rafał and Agadullina, Elena and C{\´a}rcamo, Rodrigo A. and Reeck, Crystal and Anjum, Gulnaz and Venegas, M{\´o}nica Camila Toro and Misiak, Michal and Ryan, Richard M. and Nock, Nora L. and Travaglino, Giovanni A. and Mensink, Michael C. and Feldman, Gilad and Wichman, Aaron L. and Chou, Weilun and Ziano, Ignazio and Seehuus, Martin and Chopik, William J. and Kung, Franki Y. H. and Carpentier, Joelle and Vaughn, Leigh Ann and Du, Hongfei and Xiao, Qinyu and Lima, Tiago J. S. and Noone, Chris and Onie, Sandersan and Verbruggen, Frederick and Radtke, Theda and Primbs, Maximilian A.}, title = {The psychological science accelerator's COVID-19 rapid-response dataset}, series = {Scientific Data}, volume = {10}, journal = {Scientific Data}, number = {1}, publisher = {Springer Science and Business Media LLC}, issn = {2052-4463}, doi = {10.1038/s41597-022-01811-7}, pages = {1 -- 15}, language = {en} }