@misc{ChilimoniukGosiewskaSłowiketal., author = {Chilimoniuk, Jarosław and Gosiewska, Alicja and Słowik, Jadwiga and Weiss, Romano and Deckert, P. Markus and R{\"o}diger, Stefan and Burdukiewicz, Michał}, title = {coutfitteR: efficient selection of count distributions to assess DNA damage}, series = {Annals of Translational Medicine}, volume = {9}, journal = {Annals of Translational Medicine}, number = {7}, issn = {2305-5847}, doi = {10.21037/atm-20-6363}, language = {en} } @inproceedings{RoedigerBurdukiewicz, author = {R{\"o}diger, Stefan and Burdukiewicz, Michał}, title = {Reproducible Analysis of DNA Amplification Experiments with an Open Source Software Environment}, series = {Abstractbook, 67th Annual Meeting of the German Society of Hygiene and Microbiology (DGHM), 27.-30.09.2015, M{\"u}nster}, booktitle = {Abstractbook, 67th Annual Meeting of the German Society of Hygiene and Microbiology (DGHM), 27.-30.09.2015, M{\"u}nster}, language = {en} } @misc{SpiessRoedigerBurdukiewiczetal., author = {Spiess, Andrej-Nikolai and R{\"o}diger, Stefan and Burdukiewicz, Michał and Volksdorf, Thomas and Tellinghuisen, Joel}, title = {System-specific periodicity in quantitative real-time polymerase chain reaction data questions threshold-based quantitation}, series = {Scientific Reports}, volume = {6}, journal = {Scientific Reports}, issn = {2045-2322}, doi = {10.1038/srep38951}, pages = {10}, language = {en} } @misc{BurdukiewiczSobczykRoedigeretal., author = {Burdukiewicz, Michał and Sobczyk, Piotr and R{\"o}diger, Stefan and Duda-Madej, Anna and Mackiewicz, Pawel and Kotulska, Malgorzata}, title = {Amyloidogenic motifs revealed by n-gram analysis}, series = {Scientific Reports}, volume = {7}, journal = {Scientific Reports}, issn = {2045-2322}, doi = {10.1038/s41598-017-13210-9}, pages = {12}, language = {en} } @misc{KolendaBurdukiewiczWimonćetal., author = {Kolenda, Rafał and Burdukiewicz, Michał and Wimonć, Marcjanna and Aleksandrowicz, Adrianna and Ali, Aamir and Szabo, Istvan and Tedin, Karsten and Bartholdson, Scott J. and Pickhard, Derek and Schierack, Peter}, title = {Identification of Natural Mutations Responsible for Altered Infection Phenotypes of Salmonella enterica Clinical Isolates by Using Cell Line Infection Screens}, series = {Applied and Environmental Microbiology}, volume = {87}, journal = {Applied and Environmental Microbiology}, number = {2}, issn = {1098-5336}, doi = {10.1128/AEM.02177-20}, language = {en} } @inproceedings{KolendaBurdukiewiczSzaboetal., author = {Kolenda, Rafał and Burdukiewicz, Michał and Szabo, M. and Orlowska, Aleksandra and Nitschke, J{\"o}rg and B{\"o}hm, Alexander and Schierack, Peter}, title = {Influence of Salmonella FimH sequence variation on binding to pancreatic secretory granule membrane major glycoprotein GP2 of human and porcine origin}, series = {5th ASM Conference on Salmonella, Potsdam, 29.08-01.09.2016}, booktitle = {5th ASM Conference on Salmonella, Potsdam, 29.08-01.09.2016}, publisher = {American Society for Microbiology}, address = {Washington, DC}, pages = {S. 125}, language = {en} } @misc{RoedigerLehmannFroemmeletal., author = {R{\"o}diger, Stefan and Lehmann, Werner and Fr{\"o}mmel, Ulrike and B{\"o}hm, Alexander and Nitschke, J{\"o}rg and Burdukiewicz, Michał and Schr{\"o}der, Christian and Dangla, R{\´e}mi and Droniou, Magali and Schierack, Peter}, title = {The Modi Operandi of the VideoScan Platform for the Detection and Analysis of Nucleic Acids. Life Science Day 2013 \& 17. Leibniz Conference of Advanced Science, Freie Universit{\"a}t Berlin, 24.10.2013}, pages = {1}, language = {en} } @misc{OloweAdefioyeAjayeobaetal., author = {Olowe, Olugbenga Adekunle and Adefioye, Olusolabomi J. and Ajayeoba, T. A. and Schiebel, Juliane and Weinreich, J{\"o}rg and Ali, Aamir and Burdukiewicz, Michał and R{\"o}diger, Stefan and Schierack, Peter}, title = {Phylogenetic grouping and biofilm formation of Multidrug Resistant Escherichia coli Isolates from Humans, Animals and Food products in South-west Nigeria}, series = {Scientific African}, volume = {6}, journal = {Scientific African}, issn = {2468-2276}, doi = {10.1016/j.sciaf.2019.e00158}, pages = {11}, language = {en} } @inproceedings{KolendaBurdukiewiczSchiebeletal., author = {Kolenda, Rafał and Burdukiewicz, Michał and Schiebel, Juliane and Szabo, Istvan and Orlowska, Aleksandra and Nitschke, J{\"o}rg and B{\"o}hm, Alexander and Schierack, Peter}, title = {Adhesion of Salmonella to pancreatic secretory granule membrane major glycoprotein GP2 depends on FimH sequence variation}, series = {Abstractbook, Microbiology and Infection, 5th Joint Conference of the DGHM \& VAAM, VAAM Annual Meeting 2017, 69th Annual Meeting of the DGHM}, booktitle = {Abstractbook, Microbiology and Infection, 5th Joint Conference of the DGHM \& VAAM, VAAM Annual Meeting 2017, 69th Annual Meeting of the DGHM}, publisher = {Spektrumverlag}, address = {Heidelberg}, pages = {S. 118}, language = {en} } @misc{KolendaBurdukiewiczSchierack, author = {Kolenda, Rafał and Burdukiewicz, Michał and Schierack, Peter}, title = {A systematic review and meta-analysis of the epidemiology of pathogenic Escherichia coli of calves and the role of calves as reservoirs for human pathogenic E. coli}, series = {Frontiers in Cellular and Infection Microbiology}, volume = {5}, journal = {Frontiers in Cellular and Infection Microbiology}, issn = {2235-2988}, doi = {10.3389/fcimb.2015.00023}, pages = {12}, language = {en} } @misc{BurdukiewiczSpiessBlagodatskikhetal., author = {Burdukiewicz, Michał and Spiess, Andrej-Nikolai and Blagodatskikh, Konstantin A. and Lehmann, Werner and Schierack, Peter and R{\"o}diger, Stefan}, title = {Algorithms for automated detection of hook effect-bearing amplification curves}, series = {Biomolecular Detection and Quantification}, volume = {16}, journal = {Biomolecular Detection and Quantification}, issn = {2214-7535}, doi = {10.1016/j.bdq.2018.08.001}, pages = {1 -- 4}, language = {en} } @misc{KolendaBurdukiewiczSchiebeletal., author = {Kolenda, Rafał and Burdukiewicz, Michał and Schiebel, Juliane and R{\"o}diger, Stefan and Sauer, Lysann and Szabo, Istvan and Orlowska, Aleksandra and Weinreich, J{\"o}rg and Nitschke, J{\"o}rg and B{\"o}hm, Alexander and Gerber, Ulrike and Roggenbuck, Dirk and Schierack, Peter}, title = {Adhesion of Salmonella to Pancreatic Secretory Granule Membrane Major Glycoprotein GP2 of Human and Porcine Origin Depends on FimH Sequence Variation}, series = {Frontiers in Microbiology}, volume = {9}, journal = {Frontiers in Microbiology}, number = {1905}, issn = {1664-302X}, doi = {10.3389/fmicb.2018.01905}, pages = {15}, language = {en} } @inproceedings{BurdukiewiczMikolajczykSzaboetal., author = {Burdukiewicz, Michał and Mikolajczyk, A. and Szabo, Istvan and Nitschke, J{\"o}rg and B{\"o}hm, Alexander and Schierack, Peter and Kolenda, Rafał}, title = {Automated enumeration of Salmonella spp. in cell line infection assays and screening of cell line infectivity among various Salmonella isolates}, series = {5th ASM Conference on Salmonella, Potsdam, 29.08-01.09.2016}, booktitle = {5th ASM Conference on Salmonella, Potsdam, 29.08-01.09.2016}, publisher = {American Society for Microbiology}, address = {Washington, DC}, pages = {S. 127}, language = {en} } @misc{DinterBurdukiewiczSchieracketal., author = {Dinter, Franziska and Burdukiewicz, Michał and Schierack, Peter and Lehmann, Werner and Nestler, J{\"o}rg and Dame, Gregory and R{\"o}diger, Stefan}, title = {Simultaneous detection and quantification of DNA and protein biomarkers in spectrum of cardiovascular diseases in a microfluidic microbead chip}, series = {Analytical and Bioanalytical Chemistry}, volume = {411}, journal = {Analytical and Bioanalytical Chemistry}, number = {29}, issn = {1618-2650}, doi = {10.1007/s00216-019-02199-x}, pages = {7725 -- 7735}, language = {en} } @misc{BurdukiewiczRoedigerSobczyketal., author = {Burdukiewicz, Michał and R{\"o}diger, Stefan and Sobczyk, Piotr and Menschikowski, Mario and Schierack, Peter and Mackiewicz, Pawel}, title = {Methods for comparing multiple digital PCR experiments}, series = {Biomolecular Detection and Quantification}, volume = {9}, journal = {Biomolecular Detection and Quantification}, issn = {2214-7535}, doi = {10.1016/j.bdq.2016.06.004}, pages = {14 -- 19}, language = {en} } @misc{SchiebelBoehmNitschkeetal., author = {Schiebel, Juliane and B{\"o}hm, Alexander and Nitschke, J{\"o}rg and Burdukiewicz, Michał and Weinreich, J{\"o}rg and Ali, Aamir and Roggenbuck, Dirk and R{\"o}diger, Stefan and Schierack, Peter}, title = {Genotypic and phenotypic characteristics in association with biofilm formation in different pathotypes of human clinical Escherichia coli isolates}, series = {Applied and Environmental Microbiology}, volume = {83}, journal = {Applied and Environmental Microbiology}, number = {24}, issn = {1098-5336}, doi = {10.1128/AEM.01660-17}, language = {en} } @misc{BurdukiewiczSidorczukRafaczetal., author = {Burdukiewicz, Michał and Sidorczuk, Katarzyna and Rafacz, Dominik and Pietluch, Filip and Bakała, Mateusz and Słowik, Jadwiga and Gagat, Przemysław}, title = {CancerGram: An Effective Classifier for Differentiating Anticancer from Antimicrobial Peptides}, series = {Pharmaceutics}, volume = {12}, journal = {Pharmaceutics}, number = {11}, issn = {1999-4923}, doi = {10.3390/pharmaceutics1211145}, pages = {14}, language = {en} } @misc{RoedigerBurdukiewiczBlagodatskikhetal., author = {R{\"o}diger, Stefan and Burdukiewicz, Michał and Blagodatskikh, Konstantin A. and Jahn, Michael and Schierack, Peter}, title = {R as an Environment for the Reproducible Analysis of DNA Amplification Experiments}, series = {The R journal}, volume = {7}, journal = {The R journal}, number = {1}, issn = {2073-4859}, pages = {127 -- 150}, language = {en} } @inproceedings{RoedigerBurdukiewiczHeiserichetal., author = {R{\"o}diger, Stefan and Burdukiewicz, Michał and Heiserich, Lisa and Schierack, Peter and Roggenbuck, Dirk}, title = {Digital Enumeration of Double Strand Breaks via γH2AX and Aassociated biomarkers in a Computing Environment for Reproducible Research}, series = {From autoantibody research to standardized diagnostic assays in the management of human diseases, report on the 12th Dresden Symposium on Autoantibodies, September 23-26, 2015}, booktitle = {From autoantibody research to standardized diagnostic assays in the management of human diseases, report on the 12th Dresden Symposium on Autoantibodies, September 23-26, 2015}, publisher = {Pabst Science Publishers}, address = {Lengerich}, isbn = {978-3-95853-104-8}, pages = {S. 413}, language = {en} } @misc{BurdukiewiczSidorczukRafaczetal., author = {Burdukiewicz, Michał and Sidorczuk, Katarzyna and Rafacz, Dominik and Pietluch, Filip and Chilimoniuk, Jarosław and R{\"o}diger, Stefan and Przemysław, Gagat}, title = {Proteomic Screening for Prediction and Design of Antimicrobial Peptides with AmpGram}, series = {International Journal of Molecular Sciences}, volume = {21}, journal = {International Journal of Molecular Sciences}, number = {12}, issn = {1422-0067}, doi = {10.3390/ijms21124310}, pages = {13}, language = {en} } @misc{ReimannZengJakopecetal., author = {Reimann, Ronny and Zeng, Bo and Jakopec, Martin and Burdukiewicz, Michał and Petrick, Ingolf and Schierack, Peter and R{\"o}diger, Stefan}, title = {Classification of dead and living microalgae Chlorella vulgaris by bioimage informatics an machine learning}, series = {Algal Research}, volume = {48}, journal = {Algal Research}, issn = {2211-9264}, doi = {10.1016/j.algal.2020.101908}, pages = {11}, language = {en} } @misc{RoedigerBurdukiewiczSchierack, author = {R{\"o}diger, Stefan and Burdukiewicz, Michał and Schierack, Peter}, title = {chipPCR: an R package to pre-process raw data of amplification curves. Bioinformatics}, series = {Bioinformatics}, volume = {31}, journal = {Bioinformatics}, number = {17}, issn = {1367-4803}, doi = {10.1093/bioinformatics/btv205}, pages = {2900 -- 2902}, language = {en} }